; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0017138 (gene) of Snake gourd v1 genome

Gene IDTan0017138
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptiontranscription factor IBH1
Genome locationLG06:29108059..29109232
RNA-Seq ExpressionTan0017138
SyntenyTan0017138
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575326.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. sororia]7.1e-4369.18Show/hide
Query:  MASKSGSTLMSSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRHR
        MASKSG T + ST S +RLARTFLRSF+ IKSQ P I PS           EL+RRSRRIKM AYSSMAR  GPR AWARALLFKL+TRARHRTL+ R R
Subjt:  MASKSGSTLMSSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRHR

Query:  RSMMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAI-SHHLSTN
             +RSDD+VGKLRRLVPGG+ MDVCTLLEET  YI CLS QVKVMKAI  H  STN
Subjt:  RSMMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAI-SHHLSTN

KAG7025295.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. argyrosperma]7.8e-5073.42Show/hide
Query:  MASKSGSTLMSSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRHR
        MAS+SG+T M+S+ S +RLARTFLRSFSRIKS+RP       TT  S  A EL+RRSRRIK+AAYSSMARV GP++AWARALLFKL TRARH TLMRR R
Subjt:  MASKSGSTLMSSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRHR

Query:  RSMMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAISHHLSTN
         +M +   DD VGKLRRL+PGGDGMDVCTLLEETA YIHCLS QVKVM AI+HHLSTN
Subjt:  RSMMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAISHHLSTN

XP_008464343.1 PREDICTED: transcription factor IBH1 [Cucumis melo]3.8e-4471.79Show/hide
Query:  SKSGSTLMSSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRHRRS
        SKS  TL++ST SR R ARTFLR FSRIKSQR       + T  S    +LKR+S+RIKM AYSSMARV GPR+AWARALLFKLQTR RHRTLMRR RR 
Subjt:  SKSGSTLMSSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRHRRS

Query:  MMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAIS-HHLST
          +   DDQVGKLRRL+PGG+ MDVCTLLEETA+YIHCLSTQVKVMKAIS  HLST
Subjt:  MMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAIS-HHLST

XP_023005092.1 transcription factor IBH1 [Cucurbita maxima]3.6e-4771.52Show/hide
Query:  MASKSGSTLMSSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRHR
        MA +SG T M+S+ S +RLARTFLRSFSRIKS+RP       TT  S  A EL+RRSRRIK+AAYSSMARV GP++ WARALLFKL TRARHRT MRR  
Subjt:  MASKSGSTLMSSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRHR

Query:  RSMMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAISHHLSTN
         +M +   DD VGKLRRLVPGGDGMDVCTLLEETA YIHCLS QVKVM AI+HHLS N
Subjt:  RSMMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAISHHLSTN

XP_023548405.1 transcription factor IBH1 [Cucurbita pepo subsp. pepo]1.9e-4066.67Show/hide
Query:  MASKSGSTLMSSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRHR
        MASKSG T + ST + +RLARTFLRSF+ IKSQ P I PS           ELKR+SRRIKM AYSSMAR  GPR AWARALLFKL+ RARHRTL+ R R
Subjt:  MASKSGSTLMSSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRHR

Query:  RSMMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAI-SHHLSTN
             + SDD+VGKLRRLVPGG+ MDVC+LLEET  YI CL TQVKVMKAI  H  STN
Subjt:  RSMMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAI-SHHLSTN

TrEMBL top hitse value%identityAlignment
A0A0A0KDQ3 Uncharacterized protein1.2e-3563.23Show/hide
Query:  SKSGSTLMSSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRHRRS
        SKS  TL++ST SR+  AR                   T+ T  S    +LKR+SRRIKMAAYSSMARV G R+AWARALLF+L TR RH+TLMRR RR 
Subjt:  SKSGSTLMSSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRHRRS

Query:  MMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAIS-HHLS
          +  SDD VGKLRRL+PGG+ MDVCTLLEETA+YIHCLSTQVKVMKAIS HHLS
Subjt:  MMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAIS-HHLS

A0A1S3CLD3 transcription factor IBH11.8e-4471.79Show/hide
Query:  SKSGSTLMSSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRHRRS
        SKS  TL++ST SR R ARTFLR FSRIKSQR       + T  S    +LKR+S+RIKM AYSSMARV GPR+AWARALLFKLQTR RHRTLMRR RR 
Subjt:  SKSGSTLMSSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRHRRS

Query:  MMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAIS-HHLST
          +   DDQVGKLRRL+PGG+ MDVCTLLEETA+YIHCLSTQVKVMKAIS  HLST
Subjt:  MMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAIS-HHLST

A0A5D3BPL2 Transcription factor IBH11.8e-4471.79Show/hide
Query:  SKSGSTLMSSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRHRRS
        SKS  TL++ST SR R ARTFLR FSRIKSQR       + T  S    +LKR+S+RIKM AYSSMARV GPR+AWARALLFKLQTR RHRTLMRR RR 
Subjt:  SKSGSTLMSSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRHRRS

Query:  MMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAIS-HHLST
          +   DDQVGKLRRL+PGG+ MDVCTLLEETA+YIHCLSTQVKVMKAIS  HLST
Subjt:  MMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAIS-HHLST

A0A6J1KS83 transcription factor IBH11.8e-4771.52Show/hide
Query:  MASKSGSTLMSSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRHR
        MA +SG T M+S+ S +RLARTFLRSFSRIKS+RP       TT  S  A EL+RRSRRIK+AAYSSMARV GP++ WARALLFKL TRARHRT MRR  
Subjt:  MASKSGSTLMSSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRHR

Query:  RSMMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAISHHLSTN
         +M +   DD VGKLRRLVPGGDGMDVCTLLEETA YIHCLS QVKVM AI+HHLS N
Subjt:  RSMMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAISHHLSTN

A0A7N2RCD6 Uncharacterized protein1.0e-2647.37Show/hide
Query:  MSSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRHRRSMMTNRSD
        +++   +++ AR F+R+  +++   P+          S    E+++RS+RIK+AAYSSMA  VG R+AW+RA+LFKL+ RARH  +MRR        ++D
Subjt:  MSSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRHRRSMMTNRSD

Query:  -----DQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAISHHLS
              Q  KLR+LVPGG  MD+C+LLEETAHYI CLSTQVKVM+ I+ HLS
Subjt:  -----DQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAISHHLS

SwissProt top hitse value%identityAlignment
Q01I07 Transcription factor IBH17.4e-1135.29Show/hide
Query:  LARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRH----RRSMMT---------
        LA  FLR+ SRI    P                 + RR+R I+ AAYSSMAR   PR+AW+RALL + + R R RTLMRR     RR ++          
Subjt:  LARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRH----RRSMMT---------

Query:  ------------------------NRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAI
                                     +   LRRLVPGG GM+  +LLEETA Y+  L  QV++M+ +
Subjt:  ------------------------NRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAI

Q7XR02 Transcription factor IBH14.4e-1136.47Show/hide
Query:  LARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRH----RRSMMTNRSDD----
        LA  FLR+ SRI    P                 + RR+R I+ AAYSSMAR   PR+AW+RALL +++ R R RTLMRR     RR ++   +      
Subjt:  LARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRH----RRSMMTNRSDD----

Query:  -----------------------QVGK------LRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAI
                               Q G+      LRRLVPGG GM+  +LLEETA Y+  L  QV++M+ +
Subjt:  -----------------------QVGK------LRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAI

Q9SKX1 Transcription factor IBH18.0e-1335.9Show/hide
Query:  SSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVV-GPRQAWARALLFKLQ---------TRARHRTLMRRHR
        +  P +   A  FL+S S ++ Q P  +P            +   R R+IK AAY SMAR   G  + W+RALL +           +R + +   +R R
Subjt:  SSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVV-GPRQAWARALLFKLQ---------TRARHRTLMRRHR

Query:  RSMMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAISHHLS
         +      ++   +LR LVPGG GM+   L+EETAHYI CLS QVKVM+ +   LS
Subjt:  RSMMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAISHHLS

Arabidopsis top hitse value%identityAlignment
AT2G43060.1 ILI1 binding bHLH 15.7e-1435.9Show/hide
Query:  SSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVV-GPRQAWARALLFKLQ---------TRARHRTLMRRHR
        +  P +   A  FL+S S ++ Q P  +P            +   R R+IK AAY SMAR   G  + W+RALL +           +R + +   +R R
Subjt:  SSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVV-GPRQAWARALLFKLQ---------TRARHRTLMRRHR

Query:  RSMMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAISHHLS
         +      ++   +LR LVPGG GM+   L+EETAHYI CLS QVKVM+ +   LS
Subjt:  RSMMTNRSDDQVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAISHHLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTAAATCAGGTTCAACCCTAATGAGTTCCACTCCGTCCCGGGTCCGATTAGCTCGAACCTTCCTCCGATCCTTCTCCAGGATCAAATCCCAGAGACCCACCAT
CTCCCCCTCCACCGCCACTACTACTGTCTCTCCGTTTGCTTCGGAGCTCAAACGACGAAGTCGACGGATAAAAATGGCTGCCTACTCCTCCATGGCTCGCGTGGTCGGGC
CACGGCAGGCTTGGGCTAGAGCCCTCCTCTTCAAGCTCCAGACTCGAGCCAGACACAGGACTTTGATGAGACGTCACCGCCGTTCAATGATGACAAACCGCTCGGACGAC
CAGGTCGGGAAGCTCCGGCGGTTGGTGCCGGGTGGCGACGGAATGGACGTGTGCACCTTGCTGGAGGAAACTGCTCACTACATCCATTGCCTCTCCACACAGGTTAAGGT
GATGAAAGCCATATCTCATCACTTGTCAACCAATTGA
mRNA sequenceShow/hide mRNA sequence
CTCCTCCTATTGCTTGATTCCTTCCCCTATTTGCTTCCTCTCTCTCTCTCTATCTCTTGAATTATTATTTGCAGTTTTAGAGAGAGAAAGTCTGTGTTTTTTTTAAGCTC
TTGTAGTGTTTGTGTGTAGATCTTATTATCAAGTTTTTGCCTTTTGTCCTTCCAAGCAAGAGGTCCCTCTGTGTCAGAAACCCAAAAAAAAAAAAAATAAATAAAATAAA
ATCTCAACTTCCAATCCAATTTCCCTTCTTCCATTTGTCTCTCTCTCTTCAAAAAGATATGTTGTGTCAGAGTTAGTTGTACTAGGAATTCAAGATCCTTCTCTCTCTCT
CTCTATACCAACATTATATATCTTCTCTCTTGGTTTTTTCTCATCTTCTTCTTCTTCTCCTCTCCATGGCTTCTAAATCAGGTTCAACCCTAATGAGTTCCACTCCGTCC
CGGGTCCGATTAGCTCGAACCTTCCTCCGATCCTTCTCCAGGATCAAATCCCAGAGACCCACCATCTCCCCCTCCACCGCCACTACTACTGTCTCTCCGTTTGCTTCGGA
GCTCAAACGACGAAGTCGACGGATAAAAATGGCTGCCTACTCCTCCATGGCTCGCGTGGTCGGGCCACGGCAGGCTTGGGCTAGAGCCCTCCTCTTCAAGCTCCAGACTC
GAGCCAGACACAGGACTTTGATGAGACGTCACCGCCGTTCAATGATGACAAACCGCTCGGACGACCAGGTCGGGAAGCTCCGGCGGTTGGTGCCGGGTGGCGACGGAATG
GACGTGTGCACCTTGCTGGAGGAAACTGCTCACTACATCCATTGCCTCTCCACACAGGTTAAGGTGATGAAAGCCATATCTCATCACTTGTCAACCAATTGATATCCACA
CCTCATCTTCTTCAAATCCAACACAATTTCCCTTCACACAGATCATATCCAAACAGAAAACCATAAATTTTACAAACAAGAAGAGAGAGAAAGTGGAGAAAGAGAGAGAG
ATTTCATATGATAATATCGGTTTCATAGACATATTTTCTTTTTTCTTTTTTTTTTTCTTCCATGCATATAAAAATCAAGTTATACAGAGATTTTAGAACAATATAAATAT
ATATAATATTTGTGCATGCATTGGGGTGGTGATTCTTAAGAAACTACAGTTTTTATAGACTCTGTGATTCCCCC
Protein sequenceShow/hide protein sequence
MASKSGSTLMSSTPSRVRLARTFLRSFSRIKSQRPTISPSTATTTVSPFASELKRRSRRIKMAAYSSMARVVGPRQAWARALLFKLQTRARHRTLMRRHRRSMMTNRSDD
QVGKLRRLVPGGDGMDVCTLLEETAHYIHCLSTQVKVMKAISHHLSTN