CuGenDBv2

Gene ID	Tan0017139
Organism	Trichosanthes anguina (Snake gourd v1)
Description	50S ribosomal protein L32, chloroplastic
Genome location	LG04:9394446..9397102
RNA-Seq Expression	Tan0017139
Synteny	Tan0017139
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR002677 - Ribosomal protein L32p IPR011332 - Zinc-binding ribosomal protein

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6574067.1 hypothetical protein SDJN03_27954, partial [Cucurbita argyrosperma subsp. sororia]

6.1e-67

91.97

Show/hide

Query:  MALRIMRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RAVEGQTGS+ GLKAM  VLPHSSPISGIMD KDSAPPLVLPEFNHESDRD INNCSIVGFGFP+LSFSGSMELMAVPKRK SPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRCKSCGKVKLPHFYCCSGKIGEQDNSAR
        ALKPIPVIIRCKSCGKVKLPHFYCCSG+ GEQDNSAR
Subjt:  ALKPIPVIIRCKSCGKVKLPHFYCCSGKIGEQDNSAR

KAG7013127.1 hypothetical protein SDJN02_25883 [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-65

89.78

Show/hide

Query:  MALRIMRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RAVEGQTGS+ GLKAM  VLPHSSPI+GI+D KDSAPPLVLPEFNHESDR+ INNCSIVGFGFP+LSFSGSMELMAVPKRK SPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRCKSCGKVKLPHFYCCSGKIGEQDNSAR
        ALKPIPVIIRCKSCGKVKLPHFYCCSG+ GEQDNSAR
Subjt:  ALKPIPVIIRCKSCGKVKLPHFYCCSGKIGEQDNSAR

XP_022945635.1 uncharacterized protein LOC111449817 [Cucurbita moschata]

3.0e-66

91.24

Show/hide

Query:  MALRIMRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RAVEGQTGS+ GLKAMANVLPHSSPI+GI+  KDSAPPLVLPEFNHESDRD INNCSIVGFGFP+LSFSGSMELMAVPKRK SPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRCKSCGKVKLPHFYCCSGKIGEQDNSAR
        ALKPIPVIIRCKSCGKVKLPHFYCCSG+ GEQDNSAR
Subjt:  ALKPIPVIIRCKSCGKVKLPHFYCCSGKIGEQDNSAR

XP_022968104.1 uncharacterized protein LOC111467436 [Cucurbita maxima]

8.5e-69

94.16

Show/hide

Query:  MALRIMRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RAVEGQTGS+ GLKAMA VLPHSSPISGIMDHKDSAPPLVLPEFNHESDRD INNCSIVGFGFP+LSFSGSMELMAVPKRKVSPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRCKSCGKVKLPHFYCCSGKIGEQDNSAR
        ALKPIPVIIRCKSCGKVKLPHFYCCSG+ GEQDNSAR
Subjt:  ALKPIPVIIRCKSCGKVKLPHFYCCSGKIGEQDNSAR

XP_023541204.1 uncharacterized protein LOC111801437 [Cucurbita pepo subsp. pepo]

8.0e-67

91.97

Show/hide

Query:  MALRIMRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RAVEGQTGS+ GLKAM  VLPHSSPISGIMD KDSAPPLVLPEFNHESDRD INNCSIVGFGFP+LSFSGSMELMAVPKRK SPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRCKSCGKVKLPHFYCCSGKIGEQDNSAR
        ALKPIPVIIRCKSCGKVKLPHFYCCSG+ GEQDNSAR
Subjt:  ALKPIPVIIRCKSCGKVKLPHFYCCSGKIGEQDNSAR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQP7 50S ribosomal protein L32, chloroplastic

3.3e-58

82.35

Show/hide

Query:  MALRIMRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRIMRA+EGQ GS+LGLKAMA  LPHSSPISG+M  KDS PPLVLPEFN E D D  NNCSIVGFGFP+LSFSGSMELMAVPK+KVSPHKR IRN PK
Subjt:  MALRIMRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRCKSCGKVKLPHFYCCSGKIGEQDNSA
        ALKPIPVI+RCK+CGKVKLPH+YCCSG+ G+QDNSA
Subjt:  ALKPIPVIIRCKSCGKVKLPHFYCCSGKIGEQDNSA

A0A5A7SYB6 50S ribosomal protein L32, chloroplastic

1.4e-56

83.09

Show/hide

Query:  MALRIMRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRIMRA+EGQTGS+LGLKAMA  LPHSS   G+M  KDS PPLVLPEFN ESD D INNCSIVGFGFP+L FSGSMELMAVPK+KVSPHKR IRN PK
Subjt:  MALRIMRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRCKSCGKVKLPHFYCCSGKIGEQDNSA
        ALKPIPVIIRCK CGKVKLPH+YCCSG+ GEQDNSA
Subjt:  ALKPIPVIIRCKSCGKVKLPHFYCCSGKIGEQDNSA

A0A6J1DBR3 50S ribosomal protein L32, chloroplastic

5.8e-63

87.86

Show/hide

Query:  MALRIMRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRIMRAVEGQT S+LGLKAMANVLPH SP+SGIMD KDS PPLVLPEFNHESD D I NCS VGFGFP+LSFSGSMELMAVPKRKVSPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRCKSCGKVKLPHFYCCS---GKIGEQDNSAR
        ALKPIPVIIRCKSCGKVKLPHFYCCS   G+ GEQDNS R
Subjt:  ALKPIPVIIRCKSCGKVKLPHFYCCS---GKIGEQDNSAR

A0A6J1G1I2 50S ribosomal protein L32, chloroplastic

1.5e-66

91.24

Show/hide

Query:  MALRIMRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RAVEGQTGS+ GLKAMANVLPHSSPI+GI+  KDSAPPLVLPEFNHESDRD INNCSIVGFGFP+LSFSGSMELMAVPKRK SPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRCKSCGKVKLPHFYCCSGKIGEQDNSAR
        ALKPIPVIIRCKSCGKVKLPHFYCCSG+ GEQDNSAR
Subjt:  ALKPIPVIIRCKSCGKVKLPHFYCCSGKIGEQDNSAR

A0A6J1HYN6 50S ribosomal protein L32, chloroplastic

4.1e-69

94.16

Show/hide

Query:  MALRIMRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RAVEGQTGS+ GLKAMA VLPHSSPISGIMDHKDSAPPLVLPEFNHESDRD INNCSIVGFGFP+LSFSGSMELMAVPKRKVSPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRCKSCGKVKLPHFYCCSGKIGEQDNSAR
        ALKPIPVIIRCKSCGKVKLPHFYCCSG+ GEQDNSAR
Subjt:  ALKPIPVIIRCKSCGKVKLPHFYCCSGKIGEQDNSAR

SwissProt top hits

e value

%identity

Alignment

Q0BTE2 50S ribosomal protein L32

7.6e-04

43.4

Show/hide

Query:  MAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYCCSGKIGEQD
        MAVPK+K SP +RG+R   +AL        C +CG++K PH  C  G  G  D
Subjt:  MAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYCCSGKIGEQD

Q1GT88 50S ribosomal protein L32

2.0e-04

Show/hide

Query:  MAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYC
        MAVPKRK SP KRG+R    +LK +     C +CG++K PH  C
Subjt:  MAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYC

Q2G5R9 50S ribosomal protein L32

7.6e-04

47.73

Show/hide

Query:  MAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYC
        MAVPKRK SP +RG+R    AL        C +CG++K PH  C
Subjt:  MAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYC

Q2N923 50S ribosomal protein L32

3.1e-05

52.27

Show/hide

Query:  MAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYC
        MAVPKRKVSPH+RG R    +LK +     C +CG++K PH  C
Subjt:  MAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYC

Q5FUN5 50S ribosomal protein L32

1.0e-03

45.45

Show/hide

Query:  MAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYC
        MAVPKRK +P +RG+R   +AL  +     C +CG++K PH  C
Subjt:  MAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYC

Arabidopsis top hits

e value

%identity

Alignment

AT1G26740.1 Ribosomal L32p protein family

8.6e-35

53.85

Show/hide

Query:  MALRI--MRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNG
        MALR+  ++    ++  IL  +++++V    SP++G  D   S PPLVLPEF  + ++  +      GFG P+ +F+GSMELMAVPK+K+S HKRGIRNG
Subjt:  MALRI--MRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNG

Query:  PKALKPIPVIIRCKSCGKVKLPHFYCCSGK
        PKALKP+PVIIRC+SCG+VKLPHF+CCSG+
Subjt:  PKALKPIPVIIRCKSCGKVKLPHFYCCSGK

AT1G69485.1 Ribosomal L32p protein family

2.2e-22

77.05

Show/hide

Query:  MELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYCCSGKIG---EQDNS
        MELMAVPK+K+S HKRGIRNGPKA KP PVIIRC+SCG+VKLPHFYCCSG+     EQ NS
Subjt:  MELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYCCSGKIG---EQDNS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGTTGAGGATTATGAGGGCGGTCGAGGGTCAGACGGGTTCGATACTAGGGTTGAAGGCGATGGCTAATGTTTTACCCCATTCTTCGCCGATATCTGGGATCATGGA
CCATAAGGATTCCGCGCCGCCGCTTGTTTTGCCGGAGTTTAACCATGAATCTGATAGGGATAGTATCAACAACTGCAGTATTGTGGGATTTGGTTTCCCTAATTTATCCT
TTTCCGGGTCCATGGAGCTCATGGCTGTTCCTAAGAGGAAGGTTTCTCCACATAAAAGGGGCATAAGAAATGGACCAAAGGCTCTAAAACCCATTCCAGTTATAATTCGG
TGCAAGAGTTGTGGTAAAGTCAAGCTGCCTCACTTCTATTGTTGCAGTGGCAAGATAGGGGAGCAGGATAACTCAGCCAGATGA

mRNA sequence

Show/hide mRNA sequence

CCAAATTCCTGAACCCCGTCGTCTTCTTAGTCCGATTTCCACCGCCGGTATACTGAAATCAGCACTGCCACTTGCTCGCAGCTATGGCGTTGAGGATTATGAGGGCGGTC
GAGGGTCAGACGGGTTCGATACTAGGGTTGAAGGCGATGGCTAATGTTTTACCCCATTCTTCGCCGATATCTGGGATCATGGACCATAAGGATTCCGCGCCGCCGCTTGT
TTTGCCGGAGTTTAACCATGAATCTGATAGGGATAGTATCAACAACTGCAGTATTGTGGGATTTGGTTTCCCTAATTTATCCTTTTCCGGGTCCATGGAGCTCATGGCTG
TTCCTAAGAGGAAGGTTTCTCCACATAAAAGGGGCATAAGAAATGGACCAAAGGCTCTAAAACCCATTCCAGTTATAATTCGGTGCAAGAGTTGTGGTAAAGTCAAGCTG
CCTCACTTCTATTGTTGCAGTGGCAAGATAGGGGAGCAGGATAACTCAGCCAGATGAGCCAGTGCAGGGTAAAACGGACAGAGACTGAAAGGGCATAGGTTCTTAAAATT
TTGCTTCTCTTTTTCCCCTTCAGAAAGGACGCTCACTGTATGGCATATTGCAAGATTTCAATATGTTATATTATAACCATTAATTAGCTTTTGAGCTACATCCTTGCTTT
GTACTTTACCTGCAGACTTCAGTTCTACCAAGCCTGAAATGTGACTCTTTTAGCATATGTTTTGCTTCTGAAACCACTTCTTGTTCCATAGAAGATCTAAAAAATTTTGC
TATGGGAAAAACATTACGGCACCTTAAAAAAAAATTGTTGTTTTACTCGAGACTTGATCGTGCATTTCTTATGGTATGCCGTTACAATTTATTTGTTTCTTTTAAGTTCG
AACAACATGGGAGATCAAGTATATGCCAATTATTATTGAGTTATATGCTCACTTCGCCATTGTAAAGTTGTATATGACAATTATGTTTTTGTTCTGGAGAAGTATGATAG
TCG

Protein sequence

Show/hide protein sequence

MALRIMRAVEGQTGSILGLKAMANVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDSINNCSIVGFGFPNLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIR
CKSCGKVKLPHFYCCSGKIGEQDNSAR

Tan0017139 (gene) of Snake gourd v1 genome