CuGenDBv2

Gene ID	Tan0017234
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Reverse transcriptase
Genome location	LG04:56247171..56247506
RNA-Seq Expression	Tan0017234
Synteny	Tan0017234
Gene Ontology terms	GO:0090304 - nucleic acid metabolic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016740 - transferase activity (molecular function) GO:0016787 - hydrolase activity (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035808.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

1.0e-19

53.85

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Query:  RTRQPSESVASSARKPLCNTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGQVGRPRQQGKIY
        R++   ES+AS+ R+  C +CG+ H G+CL G  VC+ CGQ GHFK++CPQL       Q   SQTV +Q    V   EGTS A+QKG VGRPRQQGK+Y
Subjt:  RTRQPSESVASSARKPLCNTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGQVGRPRQQGKIY

Query:  AMTQ
        AMTQ
Subjt:  AMTQ

KAA0045363.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

3.5e-20

52.88

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Query:  RTRQPSESVASSARKPLCNTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGQVGRPRQQGKIY
        R++   ES+AS+ R+  C +CG+ HWG+CL G   C+ C Q GHFK++CPQL       Q   SQTV +Q    V   EGTS A+QKG VGRPRQQGK+Y
Subjt:  RTRQPSESVASSARKPLCNTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGQVGRPRQQGKIY

Query:  AMTQ
        AMTQ
Subjt:  AMTQ

KAA0053222.1 hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa]

3.5e-20

52.88

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Query:  RTRQPSESVASSARKPLCNTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGQVGRPRQQGKIY
        R++   ESV+S+ R+  C +CG+ HW +C  G +VC+ CGQ GHFK++CPQL       Q   SQTV +Q    V   EGTS A+QKG VGRPRQQGK+Y
Subjt:  RTRQPSESVASSARKPLCNTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGQVGRPRQQGKIY

Query:  AMTQ
        AMTQ
Subjt:  AMTQ

KAA0053247.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

1.0e-19

53.85

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Query:  RTRQPSESVASSARKPLCNTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGQVGRPRQQGKIY
        R++   ES+AS  R+  C +CG+ H G+CL G  VC+ CGQ GHFK++CPQL       Q   SQTV +Q    V   EGTS A+QKG VGRPRQQGK+Y
Subjt:  RTRQPSESVASSARKPLCNTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGQVGRPRQQGKIY

Query:  AMTQ
        AMTQ
Subjt:  AMTQ

KAA0061889.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

5.9e-20

53.85

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Query:  RTRQPSESVASSARKPLCNTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGQVGRPRQQGKIY
        R++   ES+AS+ R+  C +CG+ H G+CL G  VC+ CGQ GHFK++CPQL       Q   SQTV +Q    V   EGTS A+QKG VGRPRQQGK+Y
Subjt:  RTRQPSESVASSARKPLCNTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGQVGRPRQQGKIY

Query:  AMTQ
        AMTQ
Subjt:  AMTQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TP97 Reverse transcriptase

1.7e-20

52.88

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Query:  RTRQPSESVASSARKPLCNTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGQVGRPRQQGKIY
        R++   ES+AS+ R+  C +CG+ HWG+CL G   C+ C Q GHFK++CPQL       Q   SQTV +Q    V   EGTS A+QKG VGRPRQQGK+Y
Subjt:  RTRQPSESVASSARKPLCNTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGQVGRPRQQGKIY

Query:  AMTQ
        AMTQ
Subjt:  AMTQ

A0A5A7UBV9 Uncharacterized protein

1.7e-20

52.88

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Query:  RTRQPSESVASSARKPLCNTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGQVGRPRQQGKIY
        R++   ESV+S+ R+  C +CG+ HW +C  G +VC+ CGQ GHFK++CPQL       Q   SQTV +Q    V   EGTS A+QKG VGRPRQQGK+Y
Subjt:  RTRQPSESVASSARKPLCNTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGQVGRPRQQGKIY

Query:  AMTQ
        AMTQ
Subjt:  AMTQ

A0A5A7UFH6 DNA/RNA polymerases superfamily protein

4.9e-20

53.85

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Query:  RTRQPSESVASSARKPLCNTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGQVGRPRQQGKIY
        R++   ES+AS  R+  C +CG+ H G+CL G  VC+ CGQ GHFK++CPQL       Q   SQTV +Q    V   EGTS A+QKG VGRPRQQGK+Y
Subjt:  RTRQPSESVASSARKPLCNTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGQVGRPRQQGKIY

Query:  AMTQ
        AMTQ
Subjt:  AMTQ

A0A5A7V873 DNA/RNA polymerases superfamily protein

2.9e-20

53.85

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Query:  RTRQPSESVASSARKPLCNTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGQVGRPRQQGKIY
        R++   ES+AS+ R+  C +CG+ H G+CL G  VC+ CGQ GHFK++CPQL       Q   SQTV +Q    V   EGTS A+QKG VGRPRQQGK+Y
Subjt:  RTRQPSESVASSARKPLCNTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGQVGRPRQQGKIY

Query:  AMTQ
        AMTQ
Subjt:  AMTQ

A0A5A7VQD2 Putative Gag-pol protein

4.9e-20

52.88

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Query:  RTRQPSESVASSARKPLCNTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGQVGRPRQQGKIY
        R++   ES+AS+ R+  C +CG+ H G+CL G  VC+ CGQ GHFK++CPQL       Q   SQT+ +Q    V   EGTS A+QKG VGRPRQQGK+Y
Subjt:  RTRQPSESVASSARKPLCNTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGQVGRPRQQGKIY

Query:  AMTQ
        AMTQ
Subjt:  AMTQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGATCAGCGAGGGACTCCCGTACAAGGCAACCTAGTGAGTCAGTAGCTAGTTCAGCAAGGAAACCTTTGTGCAACACTTGTGGAAAGTATCATTGGGGTCGATGTTT
GAGTGGCGAAAATGTATGTTTCAACTGTGGGCAAGGTGGTCACTTCAAAAGGGAATGCCCCCAGCTAATGCAAGAAGGCATGGTCGGACAGAGAACCACGTCGCAGACCG
TGAACCAGCAGCAAAATACTGGGGTAGCTGGAGGAGAAGGCACTAGCAGTGCTAAGCAGAAGGGACAGGTAGGTCGACCCCGACAACAGGGGAAGATTTACGCCATGACA
CAGTAG

mRNA sequence

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Protein sequence

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MGSARDSRTRQPSESVASSARKPLCNTCGKYHWGRCLSGENVCFNCGQGGHFKRECPQLMQEGMVGQRTTSQTVNQQQNTGVAGGEGTSSAKQKGQVGRPRQQGKIYAMT
Q

Tan0017234 (gene) of Snake gourd v1 genome