CuGenDBv2

Gene ID	Tan0017313
Organism	Trichosanthes anguina (Snake gourd v1)
Description	classical arabinogalactan protein 26
Genome location	LG06:7543807..7544358
RNA-Seq Expression	Tan0017313
Synteny	Tan0017313
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR039346 - Classical arabinogalactan protein 25/26

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575865.1 hypothetical protein SDJN03_26504, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-45

83.7

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Query:  MASIFSLYIPIFMAYTASILAFSFASYPNYFPPLISSISAAPEFSPEPSPSP--DISPLFPTPGGASLPPSSLPTIPSSPSPPNPDFTVSAPAPELPSPP
        MASIFSLYIPIFMAYTASIL FSFASYPN+FPPLISSISAAPEFSP PSPSP  DISPLFPTPGGA+LPPSSLPTIPSSPSPPNPDF  +APAPE+P PP
Subjt:  MASIFSLYIPIFMAYTASILAFSFASYPNYFPPLISSISAAPEFSPEPSPSP--DISPLFPTPGGASLPPSSLPTIPSSPSPPNPDFTVSAPAPELPSPP

Query:  SQSLPFSAAAALNSGR---LFWLALAAAFVAELCR
        SQSLPFSAAA LNSG      W+AL AA VAE+CR
Subjt:  SQSLPFSAAAALNSGR---LFWLALAAAFVAELCR

XP_022953817.1 classical arabinogalactan protein 26 [Cucurbita moschata]

2.9e-45

82.96

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Query:  MASIFSLYIPIFMAYTASILAFSFASYPNYFPPLISSISAAPEFSPEPSPSP--DISPLFPTPGGASLPPSSLPTIPSSPSPPNPDFTVSAPAPELPSPP
        MASIFSLYIPIFMAYTASIL FSFASYPN+FPPLISSISAAPEFSP PSPSP  DI+PLFPTPGGA+LPPSSLPTIPSSPSPPNPDF  +APAPE+P PP
Subjt:  MASIFSLYIPIFMAYTASILAFSFASYPNYFPPLISSISAAPEFSPEPSPSP--DISPLFPTPGGASLPPSSLPTIPSSPSPPNPDFTVSAPAPELPSPP

Query:  SQSLPFSAAAALNSGR---LFWLALAAAFVAELCR
        SQSLPFSAAA LNSG      W+AL AA VAE+CR
Subjt:  SQSLPFSAAAALNSGR---LFWLALAAAFVAELCR

XP_022991733.1 classical arabinogalactan protein 26 [Cucurbita maxima]

1.1e-44

82.22

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Query:  MASIFSLYIPIFMAYTASILAFSFASYPNYFPPLISSISAAPEFSPEPSPSP--DISPLFPTPGGASLPPSSLPTIPSSPSPPNPDFTVSAPAPELPSPP
        MASIFSLYIPIFMAYTASI AFSFASYPN+FPPLISSISAAPEFSP PSPSP  DISPLFPTPGGA+LPPSSLPTIPSSPSPPNPDF  + PAPE+P PP
Subjt:  MASIFSLYIPIFMAYTASILAFSFASYPNYFPPLISSISAAPEFSPEPSPSP--DISPLFPTPGGASLPPSSLPTIPSSPSPPNPDFTVSAPAPELPSPP

Query:  SQSLPFSAAAALNSGR---LFWLALAAAFVAELCR
        SQSLPFSAAA LNSG      W+AL AA V E+CR
Subjt:  SQSLPFSAAAALNSGR---LFWLALAAAFVAELCR

XP_023548939.1 classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo]

1.1e-44

82.22

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Query:  MASIFSLYIPIFMAYTASILAFSFASYPNYFPPLISSISAAPEFSPEPSPSP--DISPLFPTPGGASLPPSSLPTIPSSPSPPNPDFTVSAPAPELPSPP
        MASIFSLYIPIFMAYTASI  FSFASYPN+FPPLISSISAAPEFSP PSPSP  DISPLFPTPGGA+LPPSSLPTIPSSPSPPNPDF  +APAPE+P PP
Subjt:  MASIFSLYIPIFMAYTASILAFSFASYPNYFPPLISSISAAPEFSPEPSPSP--DISPLFPTPGGASLPPSSLPTIPSSPSPPNPDFTVSAPAPELPSPP

Query:  SQSLPFSAAAALNSGR---LFWLALAAAFVAELCR
        SQSLPFSA A LNSG      W+AL AA VAE+CR
Subjt:  SQSLPFSAAAALNSGR---LFWLALAAAFVAELCR

XP_038876736.1 classical arabinogalactan protein 26-like [Benincasa hispida]

5.2e-39

76.64

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Query:  MASIFSLYIPIFMAYTASILAFSFASYPNYFPPLISSISAAPEFSPEPSPSP----DISPLFPTPGGASLPPSSLPTIPSSPSPPNPDFTVSAPAPELPS
        MASIFSLYIPIFMAYTASIL FS ASYPNY P LISSISAAPEFSP PSPSP    DISPLFPTPGGA+LPPSSLPTIPSSPSPPNPDF  +APAPE+  
Subjt:  MASIFSLYIPIFMAYTASILAFSFASYPNYFPPLISSISAAPEFSPEPSPSP----DISPLFPTPGGASLPPSSLPTIPSSPSPPNPDFTVSAPAPELPS

Query:  PPSQSLPFSAAAALNSGRLFW---LALAAAFVAELCR
        PPSQSLPFSAA +LN     W   +AL  A   ELCR
Subjt:  PPSQSLPFSAAAALNSGRLFW---LALAAAFVAELCR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K510 Uncharacterized protein

2.4e-37

76.12

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Query:  MASIFSLYIPIFMAYTASILAFSFASYPNYFPP-LISSISAAPEFSPEPSPSPDISPLFPTPGGASLPPSSLPTIPSSPSPPNPDFTVSAPAPELPSPPS
        MASIFSLYIPIFMAYTAS+  FSFASYPN FP  LISSISAAPEFSP P+P+ DISPLFPTPG A+LPPSSLPTIPSSPSPPNPDF  +APAPE+P  PS
Subjt:  MASIFSLYIPIFMAYTASILAFSFASYPNYFPP-LISSISAAPEFSPEPSPSPDISPLFPTPGGASLPPSSLPTIPSSPSPPNPDFTVSAPAPELPSPPS

Query:  QSLPFSAAAALNSGR---LFWLALAAAFVAELCR
        QSLPFS AAALNSG      ++AL    VAEL R
Subjt:  QSLPFSAAAALNSGR---LFWLALAAAFVAELCR

A0A1S3BRG9 classical arabinogalactan protein 26

8.4e-35

71.94

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Query:  MASIFSLYIPIFMAYTASILAFSFASYPNYFPP----LISSISAAPEFSPEPSPSPDISPLFPTPGGASLPPSSLPTIPSSPSPPNPDFTVSAPAPELPS
        MASIFSLYIPIFMAYTAS   F+FASYPNYFP     + SSISAAPEFSP P+PS DISPLFPTPG A+LPPSSLPTIPSSPSPPNPDF   APAPE+P 
Subjt:  MASIFSLYIPIFMAYTASILAFSFASYPNYFPP----LISSISAAPEFSPEPSPSPDISPLFPTPGGASLPPSSLPTIPSSPSPPNPDFTVSAPAPELPS

Query:  PPSQSLPFSAAAALNSGRLFW-----LALAAAFVAELCR
         P+ S+PFSAAAALNS  + W     LAL  A  AEL R
Subjt:  PPSQSLPFSAAAALNSGRLFW-----LALAAAFVAELCR

A0A5A7UQZ3 Classical arabinogalactan protein 26

8.4e-35

71.94

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Query:  MASIFSLYIPIFMAYTASILAFSFASYPNYFPP----LISSISAAPEFSPEPSPSPDISPLFPTPGGASLPPSSLPTIPSSPSPPNPDFTVSAPAPELPS
        MASIFSLYIPIFMAYTAS   F+FASYPNYFP     + SSISAAPEFSP P+PS DISPLFPTPG A+LPPSSLPTIPSSPSPPNPDF   APAPE+P 
Subjt:  MASIFSLYIPIFMAYTASILAFSFASYPNYFPP----LISSISAAPEFSPEPSPSPDISPLFPTPGGASLPPSSLPTIPSSPSPPNPDFTVSAPAPELPS

Query:  PPSQSLPFSAAAALNSGRLFW-----LALAAAFVAELCR
         P+ S+PFSAAAALNS  + W     LAL  A  AEL R
Subjt:  PPSQSLPFSAAAALNSGRLFW-----LALAAAFVAELCR

A0A6J1GPB2 classical arabinogalactan protein 26

1.4e-45

82.96

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Query:  MASIFSLYIPIFMAYTASILAFSFASYPNYFPPLISSISAAPEFSPEPSPSP--DISPLFPTPGGASLPPSSLPTIPSSPSPPNPDFTVSAPAPELPSPP
        MASIFSLYIPIFMAYTASIL FSFASYPN+FPPLISSISAAPEFSP PSPSP  DI+PLFPTPGGA+LPPSSLPTIPSSPSPPNPDF  +APAPE+P PP
Subjt:  MASIFSLYIPIFMAYTASILAFSFASYPNYFPPLISSISAAPEFSPEPSPSP--DISPLFPTPGGASLPPSSLPTIPSSPSPPNPDFTVSAPAPELPSPP

Query:  SQSLPFSAAAALNSGR---LFWLALAAAFVAELCR
        SQSLPFSAAA LNSG      W+AL AA VAE+CR
Subjt:  SQSLPFSAAAALNSGR---LFWLALAAAFVAELCR

A0A6J1JX46 classical arabinogalactan protein 26

5.3e-45

82.22

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Query:  MASIFSLYIPIFMAYTASILAFSFASYPNYFPPLISSISAAPEFSPEPSPSP--DISPLFPTPGGASLPPSSLPTIPSSPSPPNPDFTVSAPAPELPSPP
        MASIFSLYIPIFMAYTASI AFSFASYPN+FPPLISSISAAPEFSP PSPSP  DISPLFPTPGGA+LPPSSLPTIPSSPSPPNPDF  + PAPE+P PP
Subjt:  MASIFSLYIPIFMAYTASILAFSFASYPNYFPPLISSISAAPEFSPEPSPSP--DISPLFPTPGGASLPPSSLPTIPSSPSPPNPDFTVSAPAPELPSPP

Query:  SQSLPFSAAAALNSGR---LFWLALAAAFVAELCR
        SQSLPFSAAA LNSG      W+AL AA V E+CR
Subjt:  SQSLPFSAAAALNSGR---LFWLALAAAFVAELCR

SwissProt top hits

e value

%identity

Alignment

Q94F57 Classical arabinogalactan protein 26

7.9e-06

41.27

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Query:  IPIFMAYTASILAFSFASYPNYFPPLISSISAAPEFSPE---------PSPSPDISPLFPTPGGASLPPSS-----LPTIPSSPSPPNPDFTVSAPAPEL
        + +F A+T  +L+    +  + F   +S+ISAAP F PE         P+ SPD SPLFPTPG + + PS      +PTIPSS SPPNPD     P  E+
Subjt:  IPIFMAYTASILAFSFASYPNYFPPLISSISAAPEFSPE---------PSPSPDISPLFPTPGGASLPPSS-----LPTIPSSPSPPNPDFTVSAPAPEL

Query:  PSPPSQSLPFSAAAALNSGRLFWLAL
         SP    LP S++  L S +L  L L
Subjt:  PSPPSQSLPFSAAAALNSGRLFWLAL

Arabidopsis top hits

e value

%identity

Alignment

AT2G47930.1 arabinogalactan protein 26

5.6e-07

41.27

Show/hide

Query:  IPIFMAYTASILAFSFASYPNYFPPLISSISAAPEFSPE---------PSPSPDISPLFPTPGGASLPPSS-----LPTIPSSPSPPNPDFTVSAPAPEL
        + +F A+T  +L+    +  + F   +S+ISAAP F PE         P+ SPD SPLFPTPG + + PS      +PTIPSS SPPNPD     P  E+
Subjt:  IPIFMAYTASILAFSFASYPNYFPPLISSISAAPEFSPE---------PSPSPDISPLFPTPGGASLPPSS-----LPTIPSSPSPPNPDFTVSAPAPEL

Query:  PSPPSQSLPFSAAAALNSGRLFWLAL
         SP    LP S++  L S +L  L L
Subjt:  PSPPSQSLPFSAAAALNSGRLFWLAL

Sequences

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CDS sequence

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ATGGCTTCCATTTTCTCTCTCTACATTCCCATTTTCATGGCCTATACAGCTTCTATTTTGGCTTTCTCTTTCGCTTCTTATCCCAATTACTTCCCTCCCCTCATTTCCTC
CATCTCCGCCGCGCCGGAATTTTCGCCTGAGCCTTCCCCGTCGCCGGACATTTCTCCCCTCTTTCCGACCCCGGGCGGCGCGTCCCTTCCGCCGTCCTCCTTGCCGACCA
TCCCCTCCAGTCCCAGCCCTCCCAACCCGGATTTTACGGTCTCCGCACCGGCGCCGGAGCTGCCTTCACCGCCGTCTCAGTCCTTGCCGTTCTCCGCTGCTGCTGCTCTC
AACTCCGGTCGGTTGTTTTGGCTGGCTCTTGCGGCGGCTTTCGTGGCGGAGCTCTGCCGGTGGTGGTGTTAG

mRNA sequence

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CCATCACAGACACCCCCTCCCTTTTCAGCTTTAATCATAACCCCTTTTCTGCTCTGGTTTTTTCCTTCTCCGTTCTTCATTCTTCTTCTTCCTCTCAAATTCTTACCCAT
TTCTTTTTTTTTTTTGTTTCTCTCTCTCTCATCATTGTAAATGGCTTCCATTTTCTCTCTCTACATTCCCATTTTCATGGCCTATACAGCTTCTATTTTGGCTTTCTCTT
TCGCTTCTTATCCCAATTACTTCCCTCCCCTCATTTCCTCCATCTCCGCCGCGCCGGAATTTTCGCCTGAGCCTTCCCCGTCGCCGGACATTTCTCCCCTCTTTCCGACC
CCGGGCGGCGCGTCCCTTCCGCCGTCCTCCTTGCCGACCATCCCCTCCAGTCCCAGCCCTCCCAACCCGGATTTTACGGTCTCCGCACCGGCGCCGGAGCTGCCTTCACC
GCCGTCTCAGTCCTTGCCGTTCTCCGCTGCTGCTGCTCTCAACTCCGGTCGGTTGTTTTGGCTGGCTCTTGCGGCGGCTTTCGTGGCGGAGCTCTGCCGGTGGTGGTGTT
AG

Protein sequence

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MASIFSLYIPIFMAYTASILAFSFASYPNYFPPLISSISAAPEFSPEPSPSPDISPLFPTPGGASLPPSSLPTIPSSPSPPNPDFTVSAPAPELPSPPSQSLPFSAAAAL
NSGRLFWLALAAAFVAELCRWWC

Tan0017313 (gene) of Snake gourd v1 genome