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Tan0017335 (gene) of Snake gourd v1 genome

Gene IDTan0017335
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG10:19924527..19924988
RNA-Seq ExpressionTan0017335
SyntenyTan0017335
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0635627.1 hypothetical protein [Gossypium davidsonii]2.5e-0828.68Show/hide
Query:  CVGSWGLWNDRNHLCFGRLVQPVIVKAEGLIRYLHDFQHENVSNKD-TCNTGAGRNLGINEDIGVKIFVDAACDEYKGRTSVGVTVRDPNGRLLAAMSNV
        C G W LW  RN   +   +      ++ +  Y+   + E +  ++ T  T    N  +  +    IF DAA D    R+++G+ V++ +G+++AA S +
Subjt:  CVGSWGLWNDRNHLCFGRLVQPVIVKAEGLIRYLHDFQHENVSNKD-TCNTGAGRNLGINEDIGVKIFVDAACDEYKGRTSVGVTVRDPNGRLLAAMSNV

Query:  HDTFINPTCSEALAILDGLQLAVRLGYSNVHIFSDS
        H+   +P  +EA A      L ++LGY NV I  DS
Subjt:  HDTFINPTCSEALAILDGLQLAVRLGYSNVHIFSDS

PPD92757.1 hypothetical protein GOBAR_DD10317 [Gossypium barbadense]8.5e-0926.95Show/hide
Query:  LICVGSWGLWNDRNHLCFGRLVQPVIVKAEGLIRYLHDFQHENVSNKDTCNTGAGRNLGINEDIGVKIFVDAACDEYKGRTSVGVTVRDPNGRLLAAMSN
        + C   W +W DRN       ++     A  +I Y+ +   +++  +D   T   +     ++  +KI  D A D+ K ++ VG+  RD NG +L + S 
Subjt:  LICVGSWGLWNDRNHLCFGRLVQPVIVKAEGLIRYLHDFQHENVSNKDTCNTGAGRNLGINEDIGVKIFVDAACDEYKGRTSVGVTVRDPNGRLLAAMSN

Query:  VHDTFINPTCSEALAILDGLQLAVRLGYSNVHIFSDSLTNV
        +H    +   +EA+A   G+Q+ +R G+ ++ +  DSLT V
Subjt:  VHDTFINPTCSEALAILDGLQLAVRLGYSNVHIFSDSLTNV

XP_018831463.1 uncharacterized protein LOC108999120 [Juglans regia]3.2e-0828.76Show/hide
Query:  SSFELICVGSWGLWNDRNHLCFGRLV---QPVIVKAEGLIRYLHDFQHENVSN-KDTCNTGAGRNLGINEDIGVKIFVDAACDEYKGRTSVGVTVRDPNG
        S F L  + +WGLW  RN +   +L+   + VI     + +   D +  +  N K  C+        +  ++   +F+D        +  +GV +RD  G
Subjt:  SSFELICVGSWGLWNDRNHLCFGRLV---QPVIVKAEGLIRYLHDFQHENVSN-KDTCNTGAGRNLGINEDIGVKIFVDAACDEYKGRTSVGVTVRDPNG

Query:  RLLAAMSNVHDTFINPTCSEALAILDGLQLAVRLGYSNVHIFSDSLTNVAMIN
        +L+ A S + +   NP+  E LA+L GLQL V LG+S + + SD +  V  +N
Subjt:  RLLAAMSNVHDTFINPTCSEALAILDGLQLAVRLGYSNVHIFSDSLTNVAMIN

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]3.4e-1033.08Show/hide
Query:  FELICVGSWGLWNDRNHLCFGRLVQPVIVKAEGLIRYLHDFQHENV--------SNKDTCNTGAGRNLGINEDIG-VKIFVDAACDEYKGRTSVGVTVRD
        F+L+ VG W +WNDRN +   R +    ++++ ++ Y+ DFQ  +V            + N     N       G +KI VDAAC +++ RT +G+  R+
Subjt:  FELICVGSWGLWNDRNHLCFGRLVQPVIVKAEGLIRYLHDFQHENV--------SNKDTCNTGAGRNLGINEDIG-VKIFVDAACDEYKGRTSVGVTVRD

Query:  PNGRLLAAMSNVHDTFINPTCSEALAILDG
          G++LAA S  HD    P  +E+LA+ DG
Subjt:  PNGRLLAAMSNVHDTFINPTCSEALAILDG

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.0e-0931.08Show/hide
Query:  LICVGSWGLWNDRNHLCFGRLVQPVIVKAEGLIRYLHDFQHENVSNKDTCNTGAGRNL----GINEDIGVKIFVDAACDEYKGRTSVGVTVRDPNGRLLA
        L  +  WG+WNDRN L  G+ V PV  K E L  +L       +SN         R +      +  + +K+  DAAC      TS G  +RD +  L+A
Subjt:  LICVGSWGLWNDRNHLCFGRLVQPVIVKAEGLIRYLHDFQHENVSNKDTCNTGAGRNL----GINEDIGVKIFVDAACDEYKGRTSVGVTVRDPNGRLLA

Query:  AMSNVHDTFINPTCSEALAILDGLQLAVRLGYSNVHIFSDSLTNVAMI
        A S      ++P  +E   IL+GL+ A    ++++ + SDSL  + +I
Subjt:  AMSNVHDTFINPTCSEALAILDGLQLAVRLGYSNVHIFSDSLTNVAMI

TrEMBL top hitse value%identityAlignment
A0A2I4FII8 uncharacterized protein LOC1089991201.6e-0828.76Show/hide
Query:  SSFELICVGSWGLWNDRNHLCFGRLV---QPVIVKAEGLIRYLHDFQHENVSN-KDTCNTGAGRNLGINEDIGVKIFVDAACDEYKGRTSVGVTVRDPNG
        S F L  + +WGLW  RN +   +L+   + VI     + +   D +  +  N K  C+        +  ++   +F+D        +  +GV +RD  G
Subjt:  SSFELICVGSWGLWNDRNHLCFGRLV---QPVIVKAEGLIRYLHDFQHENVSN-KDTCNTGAGRNLGINEDIGVKIFVDAACDEYKGRTSVGVTVRDPNG

Query:  RLLAAMSNVHDTFINPTCSEALAILDGLQLAVRLGYSNVHIFSDSLTNVAMIN
        +L+ A S + +   NP+  E LA+L GLQL V LG+S + + SD +  V  +N
Subjt:  RLLAAMSNVHDTFINPTCSEALAILDGLQLAVRLGYSNVHIFSDSLTNVAMIN

A0A5C7ICQ3 RNase H domain-containing protein2.0e-0833.33Show/hide
Query:  FELICVGSWGLWNDRNHLCFGRLVQPVIVKAEGLIRYLHDFQHENVSNKDTCNTGA-------GRNLGINEDIGVKIFVDAACDEYKGRTSVGVTVRDPN
        FEL+CV  W +W+ RN    G L  PV    E  + +LHDF  E   +K    TG+          LG       KI  DAA       + +GV ++D +
Subjt:  FELICVGSWGLWNDRNHLCFGRLVQPVIVKAEGLIRYLHDFQHENVSNKDTCNTGA-------GRNLGINEDIGVKIFVDAACDEYKGRTSVGVTVRDPN

Query:  GRLLAAMSNVHDTFINPTCSEALAILDGLQLAVRLGYSNVHIFSDSLTNVAMI
          + A++      +  P  +EALAIL GL LA+  G+    + SD+LT V  I
Subjt:  GRLLAAMSNVHDTFINPTCSEALAILDGLQLAVRLGYSNVHIFSDSLTNVAMI

A0A6J1CTE3 uncharacterized protein LOC1110145781.7e-1033.08Show/hide
Query:  FELICVGSWGLWNDRNHLCFGRLVQPVIVKAEGLIRYLHDFQHENV--------SNKDTCNTGAGRNLGINEDIG-VKIFVDAACDEYKGRTSVGVTVRD
        F+L+ VG W +WNDRN +   R +    ++++ ++ Y+ DFQ  +V            + N     N       G +KI VDAAC +++ RT +G+  R+
Subjt:  FELICVGSWGLWNDRNHLCFGRLVQPVIVKAEGLIRYLHDFQHENV--------SNKDTCNTGAGRNLGINEDIG-VKIFVDAACDEYKGRTSVGVTVRD

Query:  PNGRLLAAMSNVHDTFINPTCSEALAILDG
          G++LAA S  HD    P  +E+LA+ DG
Subjt:  PNGRLLAAMSNVHDTFINPTCSEALAILDG

A0A6J1DX30 uncharacterized protein LOC1110248744.9e-1031.08Show/hide
Query:  LICVGSWGLWNDRNHLCFGRLVQPVIVKAEGLIRYLHDFQHENVSNKDTCNTGAGRNL----GINEDIGVKIFVDAACDEYKGRTSVGVTVRDPNGRLLA
        L  +  WG+WNDRN L  G+ V PV  K E L  +L       +SN         R +      +  + +K+  DAAC      TS G  +RD +  L+A
Subjt:  LICVGSWGLWNDRNHLCFGRLVQPVIVKAEGLIRYLHDFQHENVSNKDTCNTGAGRNL----GINEDIGVKIFVDAACDEYKGRTSVGVTVRDPNGRLLA

Query:  AMSNVHDTFINPTCSEALAILDGLQLAVRLGYSNVHIFSDSLTNVAMI
        A S      ++P  +E   IL+GL+ A    ++++ + SDSL  + +I
Subjt:  AMSNVHDTFINPTCSEALAILDGLQLAVRLGYSNVHIFSDSLTNVAMI

A0A803NGI9 Uncharacterized protein1.6e-0831.61Show/hide
Query:  SSFELICVGSWGLWNDRNHLCFGRL-VQPVIVKAEGLIRYLHDFQHENVSNKDTCNT--GAGRNLGINEDIG-VKIFVDAACDEYKGRTSVGVTVRDPNG
        S  E +    W LWNDRN+   G+  + P  + A+  + Y  +FQ ++ S+K   ++   A +   I+  +  +K+ VDAACD  + +  VG+ +R+ +G
Subjt:  SSFELICVGSWGLWNDRNHLCFGRL-VQPVIVKAEGLIRYLHDFQHENVSNKDTCNT--GAGRNLGINEDIG-VKIFVDAACDEYKGRTSVGVTVRDPNG

Query:  RLLAAMSNVHDTFINPTCSEALAILDGLQLAVRLGYSNVHIFSDSLTNVAMINGM
        +++AA S      + P   EA A+L G+  A R   S     SDSL  V  IN +
Subjt:  RLLAAMSNVHDTFINPTCSEALAILDGLQLAVRLGYSNVHIFSDSLTNVAMINGM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCTTTTGAACTCATCTGTGTAGGCTCTTGGGGATTGTGGAATGATCGAAACCACCTATGCTTTGGTCGCCTAGTACAACCTGTAATTGTGAAAGCTGAGGGCTT
GATTAGATACTTACATGATTTCCAACATGAGAATGTGAGCAACAAAGATACGTGCAATACAGGGGCAGGTAGAAATTTAGGCATAAATGAGGATATAGGGGTGAAAATTT
TTGTGGATGCAGCGTGTGATGAGTATAAAGGGCGAACAAGTGTTGGGGTTACTGTTCGAGATCCAAATGGACGCTTGTTGGCGGCTATGTCCAATGTCCATGACACTTTC
ATCAATCCGACTTGCTCAGAAGCACTGGCCATTCTTGATGGATTGCAGCTTGCTGTGCGTTTAGGATACTCTAACGTACACATCTTCTCGGACTCATTAACCAATGTGGC
TATGATCAATGGGATGCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCTCTTTTGAACTCATCTGTGTAGGCTCTTGGGGATTGTGGAATGATCGAAACCACCTATGCTTTGGTCGCCTAGTACAACCTGTAATTGTGAAAGCTGAGGGCTT
GATTAGATACTTACATGATTTCCAACATGAGAATGTGAGCAACAAAGATACGTGCAATACAGGGGCAGGTAGAAATTTAGGCATAAATGAGGATATAGGGGTGAAAATTT
TTGTGGATGCAGCGTGTGATGAGTATAAAGGGCGAACAAGTGTTGGGGTTACTGTTCGAGATCCAAATGGACGCTTGTTGGCGGCTATGTCCAATGTCCATGACACTTTC
ATCAATCCGACTTGCTCAGAAGCACTGGCCATTCTTGATGGATTGCAGCTTGCTGTGCGTTTAGGATACTCTAACGTACACATCTTCTCGGACTCATTAACCAATGTGGC
TATGATCAATGGGATGCTATGA
Protein sequenceShow/hide protein sequence
MSSFELICVGSWGLWNDRNHLCFGRLVQPVIVKAEGLIRYLHDFQHENVSNKDTCNTGAGRNLGINEDIGVKIFVDAACDEYKGRTSVGVTVRDPNGRLLAAMSNVHDTF
INPTCSEALAILDGLQLAVRLGYSNVHIFSDSLTNVAMINGML