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Tan0017338 (gene) of Snake gourd v1 genome

Gene IDTan0017338
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG11:62728242..62739931
RNA-Seq ExpressionTan0017338
SyntenyTan0017338
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-0554.17Show/hide
Query:  MPRGNRLSVRARVLVLTLLYRVHTGHFLLSKLSVLRDNNAVVEIELPVPDILPLSA---GSSTSLIFCTWVK
        +PRGNR S++ R L  T++       FLLS LSVLRDN+AVVEIELPVPD LP S    GS++S    TW++
Subjt:  MPRGNRLSVRARVLVLTLLYRVHTGHFLLSKLSVLRDNNAVVEIELPVPDILPLSA---GSSTSLIFCTWVK

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]1.3e-0555.56Show/hide
Query:  MPRGNRLSVRARVLVLTLLYRVHTGHFLLSKLSVLRDNNAVVEIELPVPDILPLSA---GSSTSLIFCTWVK
        MPRGNR S++   L  T++       FLLS LSVL DNNAVVEIELPVPD LP SA   GS++S    TW++
Subjt:  MPRGNRLSVRARVLVLTLLYRVHTGHFLLSKLSVLRDNNAVVEIELPVPDILPLSA---GSSTSLIFCTWVK

TYK01989.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-0554.17Show/hide
Query:  MPRGNRLSVRARVLVLTLLYRVHTGHFLLSKLSVLRDNNAVVEIELPVPDILPLSA---GSSTSLIFCTWVK
        +PRGNR S++ R L  T++       FLLS LSVLRDN+AVVEIELPVPD LP S    GS++S    TW++
Subjt:  MPRGNRLSVRARVLVLTLLYRVHTGHFLLSKLSVLRDNNAVVEIELPVPDILPLSA---GSSTSLIFCTWVK

TYK04298.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.2e-0652.5Show/hide
Query:  KENSMPRGNRLSVRARVLVLTLLYRVHTGHFLLSKLSVLRDNNAVVEIELPVPDILPLSAGSS-TSLIFCTWVKQGQQVF
        K + MPRGNR S++   L  T++       FLLS LSVLRDN+AVVEIELPVPD LP SA SS ++ I  T + +G  V+
Subjt:  KENSMPRGNRLSVRARVLVLTLLYRVHTGHFLLSKLSVLRDNNAVVEIELPVPDILPLSAGSS-TSLIFCTWVKQGQQVF

TYK15867.1 hypothetical protein E5676_scaffold637G00440 [Cucumis melo var. makuwa]1.3e-0558.73Show/hide
Query:  KENSMPRGNRLSVRARVLVLTLLYRVHTGHFLLSKLSVLRDNNAVVEIELPVPDILPLSAGSS
        K + +PRGNR S++   L  T++       FLLS LSVLRDNN VVEIELPVPD LP SA SS
Subjt:  KENSMPRGNRLSVRARVLVLTLLYRVHTGHFLLSKLSVLRDNNAVVEIELPVPDILPLSAGSS

TrEMBL top hitse value%identityAlignment
A0A5A7T223 Reverse transcriptase4.8e-0654.17Show/hide
Query:  MPRGNRLSVRARVLVLTLLYRVHTGHFLLSKLSVLRDNNAVVEIELPVPDILPLSA---GSSTSLIFCTWVK
        +PRGNR S++ R L  T++       FLLS LSVLRDN+AVVEIELPVPD LP S    GS++S    TW++
Subjt:  MPRGNRLSVRARVLVLTLLYRVHTGHFLLSKLSVLRDNNAVVEIELPVPDILPLSA---GSSTSLIFCTWVK

A0A5A7VIY9 Uncharacterized protein6.3e-0655.56Show/hide
Query:  MPRGNRLSVRARVLVLTLLYRVHTGHFLLSKLSVLRDNNAVVEIELPVPDILPLSA---GSSTSLIFCTWVK
        MPRGNR S++   L  T++       FLLS LSVL DNNAVVEIELPVPD LP SA   GS++S    TW++
Subjt:  MPRGNRLSVRARVLVLTLLYRVHTGHFLLSKLSVLRDNNAVVEIELPVPDILPLSA---GSSTSLIFCTWVK

A0A5D3BV68 Reverse transcriptase4.8e-0654.17Show/hide
Query:  MPRGNRLSVRARVLVLTLLYRVHTGHFLLSKLSVLRDNNAVVEIELPVPDILPLSA---GSSTSLIFCTWVK
        +PRGNR S++ R L  T++       FLLS LSVLRDN+AVVEIELPVPD LP S    GS++S    TW++
Subjt:  MPRGNRLSVRARVLVLTLLYRVHTGHFLLSKLSVLRDNNAVVEIELPVPDILPLSA---GSSTSLIFCTWVK

A0A5D3BZ50 Pentatricopeptide repeat-containing protein5.7e-0752.5Show/hide
Query:  KENSMPRGNRLSVRARVLVLTLLYRVHTGHFLLSKLSVLRDNNAVVEIELPVPDILPLSAGSS-TSLIFCTWVKQGQQVF
        K + MPRGNR S++   L  T++       FLLS LSVLRDN+AVVEIELPVPD LP SA SS ++ I  T + +G  V+
Subjt:  KENSMPRGNRLSVRARVLVLTLLYRVHTGHFLLSKLSVLRDNNAVVEIELPVPDILPLSAGSS-TSLIFCTWVKQGQQVF

A0A5D3CVC0 Uncharacterized protein6.3e-0658.73Show/hide
Query:  KENSMPRGNRLSVRARVLVLTLLYRVHTGHFLLSKLSVLRDNNAVVEIELPVPDILPLSAGSS
        K + +PRGNR S++   L  T++       FLLS LSVLRDNN VVEIELPVPD LP SA SS
Subjt:  KENSMPRGNRLSVRARVLVLTLLYRVHTGHFLLSKLSVLRDNNAVVEIELPVPDILPLSAGSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAAGCTCGAGCAAATTCTGACATTAAGTTACTGGTTTGTGAAGAGGAAGACAGAGGAGAGAATTTGCTGTCAAATCTGAGAAACCTCTGCAACAAGACCACAAA
CAGGGCAAGAGTTTGTTGCCAGTGTAGCAAGGAGAACTCCATGCCAAGAGGAAATAGGTTGAGTGTACGGGCCAGGGTTCTAGTTCTAACGTTGTTATACCGTGTGCACA
CAGGTCATTTTCTTTTGTCGAAGTTGAGTGTACTCCGTGACAACAATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATATCCTTCCATTGTCTGCTGGAAGCTCCACA
AGCTTAATATTTTGTACGTGGGTAAAACAGGGTCAACAGGTCTTTTCAGAAAATCAGCAAGTATGTCGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAAGCTCGAGCAAATTCTGACATTAAGTTACTGGTTTGTGAAGAGGAAGACAGAGGAGAGAATTTGCTGTCAAATCTGAGAAACCTCTGCAACAAGACCACAAA
CAGGGCAAGAGTTTGTTGCCAGTGTAGCAAGGAGAACTCCATGCCAAGAGGAAATAGGTTGAGTGTACGGGCCAGGGTTCTAGTTCTAACGTTGTTATACCGTGTGCACA
CAGGTCATTTTCTTTTGTCGAAGTTGAGTGTACTCCGTGACAACAATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATATCCTTCCATTGTCTGCTGGAAGCTCCACA
AGCTTAATATTTTGTACGTGGGTAAAACAGGGTCAACAGGTCTTTTCAGAAAATCAGCAAGTATGTCGTTAA
Protein sequenceShow/hide protein sequence
MKEARANSDIKLLVCEEEDRGENLLSNLRNLCNKTTNRARVCCQCSKENSMPRGNRLSVRARVLVLTLLYRVHTGHFLLSKLSVLRDNNAVVEIELPVPDILPLSAGSST
SLIFCTWVKQGQQVFSENQQVCR