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Tan0017350 (gene) of Snake gourd v1 genome

Gene IDTan0017350
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDNA-directed RNA polymerase II subunit 1-like
Genome locationLG10:1133405..1133850
RNA-Seq ExpressionTan0017350
SyntenyTan0017350
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597057.1 hypothetical protein SDJN03_10237, partial [Cucurbita argyrosperma subsp. sororia]1.5e-1153.85Show/hide
Query:  QRCVSLPRPTPAAASPEIPSPAAIAAAVTRRSTPAKPAKSNHHHQPSEVVNIRGENMGAAVSIINKSSE-----KKEKKKLISGREKDDEKELRKLNWLV
        QR  SLPRPTP +AS +IP PA  AAA        KPAKS+ HHQ S+ +NIRGE++G  V  IN+S E     K  KKK  S    DD K  +K+  + 
Subjt:  QRCVSLPRPTPAAASPEIPSPAAIAAAVTRRSTPAKPAKSNHHHQPSEVVNIRGENMGAAVSIINKSSE-----KKEKKKLISGREKDDEKELRKLNWLV

Query:  MNENFQGVNNSLLFNSS
        MN NFQGVNNSLLFNSS
Subjt:  MNENFQGVNNSLLFNSS

KAG7028528.1 hypothetical protein SDJN02_09709 [Cucurbita argyrosperma subsp. argyrosperma]6.3e-0539.81Show/hide
Query:  RRSTPAKPAKSNH---------------HHQPSEVVNIRGENMGAAVSIINKS--SEKKEKKKLI---SGREKDDEKELRKL-NWLVMNENFQGVNNSLL
        +++T  KPAK++H               H Q S+V+NI+GEN+GA + I   S  +E  +KK  +   S  EKD  K    +     MN NFQGVNNS+L
Subjt:  RRSTPAKPAKSNH---------------HHQPSEVVNIRGENMGAAVSIINKS--SEKKEKKKLI---SGREKDDEKELRKL-NWLVMNENFQGVNNSLL

Query:  FNSSSIHR
        +NSS  HR
Subjt:  FNSSSIHR

XP_004133796.1 extensin [Cucumis sativus]4.8e-0546.67Show/hide
Query:  AKPAKSNHHHQ-PSEVVNIRGENMGAAVSIINKSSEKKE--KKKLISGREKDDEKELRKLN-----WLVMNENFQGVNNSLLFNSSSIHR
        +KP +   H Q  S+V+NI+GEN+G AV  I +SS+  E  KKK   G+ K++E++  K N        MN NFQGVNNS+L+NSS  HR
Subjt:  AKPAKSNHHHQ-PSEVVNIRGENMGAAVSIINKSSEKKE--KKKLISGREKDDEKELRKLN-----WLVMNENFQGVNNSLLFNSSSIHR

XP_008437849.1 PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis melo]1.6e-0546.67Show/hide
Query:  AKPAKSNHHHQ-PSEVVNIRGENMGAAVSIINKSSEKKE--KKKLISGREKDDEKELRKLN-----WLVMNENFQGVNNSLLFNSSSIHR
        +KP +  HH Q  S+V+NI+G+N+G AV  I +SS+  E  KKK   G+ K++E++  K N        MN NFQGVNNS+L+NSS  HR
Subjt:  AKPAKSNHHHQ-PSEVVNIRGENMGAAVSIINKSSEKKE--KKKLISGREKDDEKELRKLN-----WLVMNENFQGVNNSLLFNSSSIHR

XP_023521993.1 uncharacterized protein LOC111785865 [Cucurbita pepo subsp. pepo]1.0e-1037.16Show/hide
Query:  MTNLPCFGRTWHCQRCVSLPR---------PTPAAA------------------------SPEIPSPAAIAAAVTRRSTPAKPAKSNH------------
        M NLP FGRTW+  R  SLPR         P PAAA                        SP IPSP    + + +++T  KPAK++H            
Subjt:  MTNLPCFGRTWHCQRCVSLPR---------PTPAAA------------------------SPEIPSPAAIAAAVTRRSTPAKPAKSNH------------

Query:  ---HHQPSEVVNIRGENMGAAVSIINKS--SEKKEKKKLI---SGREKDDEKELRKL-NWLVMNENFQGVNNSLLFNSSSIHR
           H Q S+V+NI+GEN+GA + I   S  +E  +KK  +   S  EKD  K    +     MN NFQGVNNS+L+NSS  HR
Subjt:  ---HHQPSEVVNIRGENMGAAVSIINKS--SEKKEKKKLI---SGREKDDEKELRKL-NWLVMNENFQGVNNSLLFNSSSIHR

TrEMBL top hitse value%identityAlignment
A0A0A0L5T3 Uncharacterized protein2.3e-0546.67Show/hide
Query:  AKPAKSNHHHQ-PSEVVNIRGENMGAAVSIINKSSEKKE--KKKLISGREKDDEKELRKLN-----WLVMNENFQGVNNSLLFNSSSIHR
        +KP +   H Q  S+V+NI+GEN+G AV  I +SS+  E  KKK   G+ K++E++  K N        MN NFQGVNNS+L+NSS  HR
Subjt:  AKPAKSNHHHQ-PSEVVNIRGENMGAAVSIINKSSEKKE--KKKLISGREKDDEKELRKLN-----WLVMNENFQGVNNSLLFNSSSIHR

A0A1S3AVJ6 microtubule-associated protein RP/EB family member 1-like8.0e-0646.67Show/hide
Query:  AKPAKSNHHHQ-PSEVVNIRGENMGAAVSIINKSSEKKE--KKKLISGREKDDEKELRKLN-----WLVMNENFQGVNNSLLFNSSSIHR
        +KP +  HH Q  S+V+NI+G+N+G AV  I +SS+  E  KKK   G+ K++E++  K N        MN NFQGVNNS+L+NSS  HR
Subjt:  AKPAKSNHHHQ-PSEVVNIRGENMGAAVSIINKSSEKKE--KKKLISGREKDDEKELRKLN-----WLVMNENFQGVNNSLLFNSSSIHR

A0A5A7TZ60 Microtubule-associated protein RP/EB family member 1-like8.0e-0646.67Show/hide
Query:  AKPAKSNHHHQ-PSEVVNIRGENMGAAVSIINKSSEKKE--KKKLISGREKDDEKELRKLN-----WLVMNENFQGVNNSLLFNSSSIHR
        +KP +  HH Q  S+V+NI+G+N+G AV  I +SS+  E  KKK   G+ K++E++  K N        MN NFQGVNNS+L+NSS  HR
Subjt:  AKPAKSNHHHQ-PSEVVNIRGENMGAAVSIINKSSEKKE--KKKLISGREKDDEKELRKLN-----WLVMNENFQGVNNSLLFNSSSIHR

A0A6J1IEX0 DNA-directed RNA polymerase II subunit 1-like isoform X25.2e-0536.89Show/hide
Query:  PEIPSPAAIAAAVTRRSTPAKPAKSNH---------------HHQPSEVVNIRGENMGAAVSIINKS--SEKKEKKKLI---SGREKDDEKELRKL-NWL
        P  P      + + +++T  KPAK++H               H Q S+V+NI+GEN+GA + I   S  +E  +KK  +   S  EKD  K    +    
Subjt:  PEIPSPAAIAAAVTRRSTPAKPAKSNH---------------HHQPSEVVNIRGENMGAAVSIINKS--SEKKEKKKLI---SGREKDDEKELRKL-NWL

Query:  VMNENFQGVNNSLLFNSSSIHR
         MN NFQGVNNS+L+NSS  HR
Subjt:  VMNENFQGVNNSLLFNSSSIHR

A0A6J1IHF4 DNA-directed RNA polymerase II subunit 1-like isoform X15.2e-0536.89Show/hide
Query:  PEIPSPAAIAAAVTRRSTPAKPAKSNH---------------HHQPSEVVNIRGENMGAAVSIINKS--SEKKEKKKLI---SGREKDDEKELRKL-NWL
        P  P      + + +++T  KPAK++H               H Q S+V+NI+GEN+GA + I   S  +E  +KK  +   S  EKD  K    +    
Subjt:  PEIPSPAAIAAAVTRRSTPAKPAKSNH---------------HHQPSEVVNIRGENMGAAVSIINKS--SEKKEKKKLI---SGREKDDEKELRKL-NWL

Query:  VMNENFQGVNNSLLFNSSSIHR
         MN NFQGVNNS+L+NSS  HR
Subjt:  VMNENFQGVNNSLLFNSSSIHR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAATCTTCCTTGCTTTGGTCGTACATGGCATTGCCAACGTTGCGTTTCTCTTCCTCGCCCTACTCCGGCAGCCGCCTCTCCTGAAATTCCATCACCCGCCGCCAT
TGCCGCCGCCGTCACCCGACGCTCTACTCCGGCGAAGCCAGCAAAATCTAATCACCATCATCAGCCGAGTGAAGTTGTAAACATTAGAGGCGAAAATATGGGCGCTGCTG
TGAGTATTATTAATAAATCATCTGAAAAAAAAGAAAAGAAGAAATTAATTAGTGGAAGAGAAAAAGATGATGAGAAAGAATTAAGGAAATTAAATTGGTTGGTGATGAAT
GAGAATTTTCAAGGGGTCAATAATTCGCTTTTGTTCAACTCTTCTTCCATCCACCGTTAA
mRNA sequenceShow/hide mRNA sequence
CTACTTTCTAAAATCTTCAAATTTTAATTTTCTTTCCTTCCATATGACAAATCTTCCTTGCTTTGGTCGTACATGGCATTGCCAACGTTGCGTTTCTCTTCCTCGCCCTA
CTCCGGCAGCCGCCTCTCCTGAAATTCCATCACCCGCCGCCATTGCCGCCGCCGTCACCCGACGCTCTACTCCGGCGAAGCCAGCAAAATCTAATCACCATCATCAGCCG
AGTGAAGTTGTAAACATTAGAGGCGAAAATATGGGCGCTGCTGTGAGTATTATTAATAAATCATCTGAAAAAAAAGAAAAGAAGAAATTAATTAGTGGAAGAGAAAAAGA
TGATGAGAAAGAATTAAGGAAATTAAATTGGTTGGTGATGAATGAGAATTTTCAAGGGGTCAATAATTCGCTTTTGTTCAACTCTTCTTCCATCCACCGTTAATCGTGAT
GCTGGC
Protein sequenceShow/hide protein sequence
MTNLPCFGRTWHCQRCVSLPRPTPAAASPEIPSPAAIAAAVTRRSTPAKPAKSNHHHQPSEVVNIRGENMGAAVSIINKSSEKKEKKKLISGREKDDEKELRKLNWLVMN
ENFQGVNNSLLFNSSSIHR