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Tan0017370 (gene) of Snake gourd v1 genome

Gene IDTan0017370
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionMediator of RNA polymerase II transcription subunit 13, putative
Genome locationLG05:69289018..69289802
RNA-Seq ExpressionTan0017370
SyntenyTan0017370
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652596.1 hypothetical protein Csa_014373 [Cucumis sativus]2.0e-4076.56Show/hide
Query:  MKKKPELED--DDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRCST-GDRRWDFAQSLWDSYEIVTVSKCLERGLVLDGD
        MKKKP+L    DDDRHLEILKAVAQAW SH+G+SKPA+EFDAH RRN    PSRFKIEA+R+R ST  DRRWDFAQSLWDSYEIVTVSK LE      G 
Subjt:  MKKKPELED--DDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRCST-GDRRWDFAQSLWDSYEIVTVSKCLERGLVLDGD

Query:  DRIQRKRRESCNSLRNLFNRASSRRFNF
         R QRKRRESCNSLRNLFNRASSRRFN+
Subjt:  DRIQRKRRESCNSLRNLFNRASSRRFNF

XP_008438871.1 PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo]3.1e-4172.26Show/hide
Query:  MKKKPELED--DDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRC-STGDRRWDFAQSLWDSYEIVTVSKCLERGLVLDGD
        MKKKP+L    D DRHLEILKAVAQAW +H+G+SKPA+EFDAH RRN    PSRFK+EA+R+R  S  +RRWDFAQSLWDSYEIVTVSK LE GLVLDGD
Subjt:  MKKKPELED--DDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRC-STGDRRWDFAQSLWDSYEIVTVSKCLERGLVLDGD

Query:  ---------DRIQRKRRESCNSLRNLFNRASSRRFNF
                  R QRKRRESCNSLRNLFNRASSRRFN+
Subjt:  ---------DRIQRKRRESCNSLRNLFNRASSRRFNF

XP_011651756.1 uncharacterized protein LOC105434938 [Cucumis sativus]1.5e-4375.91Show/hide
Query:  MKKKPELED--DDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRCST-GDRRWDFAQSLWDSYEIVTVSKCLERGLVLDGD
        MKKKP+L    DDDRHLEILKAVAQAW SH+G+SKPA+EFDAH RRN    PSRFKIEA+R+R ST  DRRWDFAQSLWDSYEIVTVSK LE GLVLDGD
Subjt:  MKKKPELED--DDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRCST-GDRRWDFAQSLWDSYEIVTVSKCLERGLVLDGD

Query:  ---------DRIQRKRRESCNSLRNLFNRASSRRFNF
                  R QRKRRESCNSLRNLFNRASSRRFN+
Subjt:  ---------DRIQRKRRESCNSLRNLFNRASSRRFNF

XP_022137185.1 uncharacterized protein LOC111008716 [Momordica charantia]1.3e-4273.91Show/hide
Query:  MKKKPELEDDDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRCSTGDR----RWDFAQSLWDSYEIVTVSKCLERGLVLDG
        MKKKPE+E DD RHLEILKAVAQAW SH+GSSKPA EFDAH RRNC G PSRFK+EA+RTR S GDR    RWDF+QSLWDSYEIVTVSK LE GLVLDG
Subjt:  MKKKPELEDDDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRCSTGDR----RWDFAQSLWDSYEIVTVSKCLERGLVLDG

Query:  D----------DRIQRKRRESCNSLRNLFNRASSRRFN
        D           R+QRK  ES NSLRNLFNR SSRRFN
Subjt:  D----------DRIQRKRRESCNSLRNLFNRASSRRFN

XP_038894267.1 uncharacterized protein LOC120082919 [Benincasa hispida]2.3e-4475.56Show/hide
Query:  MKKKPELEDDDD-RHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRCSTGDRRWDFAQSLWDSYEIVTVSKCLERGLVLD----
        MKKKPEL+DDDD RHLEILKAVAQAW SH+GSSKPA+EFDAH RRN    PSRFK+EA+RTR S  DRRWDF QSLWDSYEIVTVSK LE GLVLD    
Subjt:  MKKKPELEDDDD-RHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRCSTGDRRWDFAQSLWDSYEIVTVSKCLERGLVLD----

Query:  -----GDDRIQRKRRESCNSLRNLFNRASSRRFNF
             G  R QRK+RESCNSLRNLF+RASSRRFN+
Subjt:  -----GDDRIQRKRRESCNSLRNLFNRASSRRFNF

TrEMBL top hitse value%identityAlignment
A0A0A0LTM3 Uncharacterized protein7.2e-4475.91Show/hide
Query:  MKKKPELED--DDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRCST-GDRRWDFAQSLWDSYEIVTVSKCLERGLVLDGD
        MKKKP+L    DDDRHLEILKAVAQAW SH+G+SKPA+EFDAH RRN    PSRFKIEA+R+R ST  DRRWDFAQSLWDSYEIVTVSK LE GLVLDGD
Subjt:  MKKKPELED--DDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRCST-GDRRWDFAQSLWDSYEIVTVSKCLERGLVLDGD

Query:  ---------DRIQRKRRESCNSLRNLFNRASSRRFNF
                  R QRKRRESCNSLRNLFNRASSRRFN+
Subjt:  ---------DRIQRKRRESCNSLRNLFNRASSRRFNF

A0A1S3AX17 uncharacterized protein LOC1034838291.5e-4172.26Show/hide
Query:  MKKKPELED--DDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRC-STGDRRWDFAQSLWDSYEIVTVSKCLERGLVLDGD
        MKKKP+L    D DRHLEILKAVAQAW +H+G+SKPA+EFDAH RRN    PSRFK+EA+R+R  S  +RRWDFAQSLWDSYEIVTVSK LE GLVLDGD
Subjt:  MKKKPELED--DDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRC-STGDRRWDFAQSLWDSYEIVTVSKCLERGLVLDGD

Query:  ---------DRIQRKRRESCNSLRNLFNRASSRRFNF
                  R QRKRRESCNSLRNLFNRASSRRFN+
Subjt:  ---------DRIQRKRRESCNSLRNLFNRASSRRFNF

A0A5A7UNW1 Uncharacterized protein1.5e-4172.26Show/hide
Query:  MKKKPELED--DDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRC-STGDRRWDFAQSLWDSYEIVTVSKCLERGLVLDGD
        MKKKP+L    D DRHLEILKAVAQAW +H+G+SKPA+EFDAH RRN    PSRFK+EA+R+R  S  +RRWDFAQSLWDSYEIVTVSK LE GLVLDGD
Subjt:  MKKKPELED--DDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRC-STGDRRWDFAQSLWDSYEIVTVSKCLERGLVLDGD

Query:  ---------DRIQRKRRESCNSLRNLFNRASSRRFNF
                  R QRKRRESCNSLRNLFNRASSRRFN+
Subjt:  ---------DRIQRKRRESCNSLRNLFNRASSRRFNF

A0A6J1C5Z6 uncharacterized protein LOC1110087166.1e-4373.91Show/hide
Query:  MKKKPELEDDDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRCSTGDR----RWDFAQSLWDSYEIVTVSKCLERGLVLDG
        MKKKPE+E DD RHLEILKAVAQAW SH+GSSKPA EFDAH RRNC G PSRFK+EA+RTR S GDR    RWDF+QSLWDSYEIVTVSK LE GLVLDG
Subjt:  MKKKPELEDDDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRCSTGDR----RWDFAQSLWDSYEIVTVSKCLERGLVLDG

Query:  D----------DRIQRKRRESCNSLRNLFNRASSRRFN
        D           R+QRK  ES NSLRNLFNR SSRRFN
Subjt:  D----------DRIQRKRRESCNSLRNLFNRASSRRFN

A0A6J1E7J5 uncharacterized protein LOC1114313508.3e-4072.93Show/hide
Query:  MKKKPELEDDDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRCSTGD-RRWDFAQSLWDSYEIVTVSKCLERGLVLDGD--
        MK KP +ED+D  HLEILKAVAQAWQSH+G+SKPA+EFDAH RRNC  NPSRFK+EA+R+R S G  RRWDF QSLWDSYEIV VSK LE GLVLDGD  
Subjt:  MKKKPELEDDDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRCSTGD-RRWDFAQSLWDSYEIVTVSKCLERGLVLDGD--

Query:  ------DRIQRKRRESCNSLRNLFNRASSRRFN
               R QRK+RESCNSLRNLFNR +SRRFN
Subjt:  ------DRIQRKRRESCNSLRNLFNRASSRRFN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G24700.1 unknown protein1.1e-2044.76Show/hide
Query:  MKKKPELEDDDD-------RHLEILKAVAQAWQSHSGSSK-PATEFDAHRRRN-CTGNPSRFKIEAMRTRCSTGDRRWDFAQSLWDSYEIVTVSKCLERG
        M+KK E +D+++       + LE++KA AQAW SHS +SK    EFDA R+     G  SRFK EA+  +       W+F QSLWD YEI++VSK LER 
Subjt:  MKKKPELEDDDD-------RHLEILKAVAQAWQSHSGSSK-PATEFDAHRRRN-CTGNPSRFKIEAMRTRCSTGDRRWDFAQSLWDSYEIVTVSKCLERG

Query:  LVL----------DGDDRIQRKR-RESCNSLRNLFNRASSRRF
        L L          DG  ++++K+ R+S NSLR+LF R+SS+RF
Subjt:  LVL----------DGDDRIQRKR-RESCNSLRNLFNRASSRRF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGAAACCAGAGCTTGAAGACGACGACGATCGTCATCTCGAAATCCTCAAGGCGGTGGCGCAGGCCTGGCAAAGCCACAGCGGCAGTTCAAAGCCGGCAACTGA
ATTCGACGCCCATCGCCGCCGCAATTGCACAGGCAATCCATCTCGGTTCAAGATTGAGGCCATGCGGACCCGGTGTTCCACCGGCGACCGGCGATGGGACTTCGCCCAGT
CGCTGTGGGACTCGTATGAGATCGTGACGGTGTCGAAGTGCCTGGAGAGGGGGCTGGTGCTCGACGGCGACGACCGGATTCAGCGGAAACGGCGGGAGAGTTGTAATAGT
TTGAGAAATTTGTTCAATAGGGCTTCTTCGAGGAGATTCAATTTCAATTAG
mRNA sequenceShow/hide mRNA sequence
GTCCGCCCCTGCTGACGACATCAAAATGGCTATATAAATTTAACCTTAAATCGATGATCTAAATTAGTCAGCATAAATTAATGAGCTAAATATAGAGACCTAGAGAGGAG
AGGACACGAGTAAAGAGTTTAGAATTAAAAGCAAATAAAAAATCAGAAGCCAAAGACTGGACAGTTTATTTGGGTGGCCGATTATTATACTGAGAAAATGTACGGTCCAC
AGTGTAAAGTACCAAAATCAAAACCCTTTTCTCTCGGACTCAAATATGAGGCTCATTCAATTTCTTAATTCACACCACCATGAAGAAGAAACCAGAGCTTGAAGACGACG
ACGATCGTCATCTCGAAATCCTCAAGGCGGTGGCGCAGGCCTGGCAAAGCCACAGCGGCAGTTCAAAGCCGGCAACTGAATTCGACGCCCATCGCCGCCGCAATTGCACA
GGCAATCCATCTCGGTTCAAGATTGAGGCCATGCGGACCCGGTGTTCCACCGGCGACCGGCGATGGGACTTCGCCCAGTCGCTGTGGGACTCGTATGAGATCGTGACGGT
GTCGAAGTGCCTGGAGAGGGGGCTGGTGCTCGACGGCGACGACCGGATTCAGCGGAAACGGCGGGAGAGTTGTAATAGTTTGAGAAATTTGTTCAATAGGGCTTCTTCGA
GGAGATTCAATTTCAATTAGGCATTCGAAATTCGAACCCAATGTATGAAATTTGATTTCTTGATAAATCATTTTGAGTGATTGGGATTGGGTTTGGGAACGCGATTCCAT
GGGTTTTGATTTTTC
Protein sequenceShow/hide protein sequence
MKKKPELEDDDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRCSTGDRRWDFAQSLWDSYEIVTVSKCLERGLVLDGDDRIQRKRRESCNS
LRNLFNRASSRRFNFN