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Tan0017379 (gene) of Snake gourd v1 genome

Gene IDTan0017379
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG03:51390646..51415037
RNA-Seq ExpressionTan0017379
SyntenyTan0017379
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-1844.44Show/hide
Query:  PRGNRSSVRAKVLVLEAIWDRVHTGHFLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAACPIQRRMLY----VEIELPVPDNLP----------------
        PRGNR S++ + +    I        F LSTLSVL DN+AVVSAG+APLRQRRWEC          ++    VEIELPVPD LP                
Subjt:  PRGNRSSVRAKVLVLEAIWDRVHTGHFLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAACPIQRRMLY----VEIELPVPDNLP----------------

Query:  ----------YLVCLSGK------TGSTGIVREVNDVCWLHAVYRAKLADSSGGGVTTLYQS
                  Y V L  K        S  IVR  +DVCWLHA++RAK A   GGGVTT YQS
Subjt:  ----------YLVCLSGK------TGSTGIVREVNDVCWLHAVYRAKLADSSGGGVTTLYQS

KAA0045180.1 uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa]3.4e-2044.19Show/hide
Query:  MVGKLIKFPTTFMKNPPRGNRSSVRAKVLVLEAIWDRVHTGHFLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAACPIQRRMLYVEIELPVPDNLPYLVC
        MVGKLI++PTT MK  PRGNR S++   L    I        F LSTLSVL DN+ VVSAGRA LRQRRWEC            VEIELPVPD LP    
Subjt:  MVGKLIKFPTTFMKNPPRGNRSSVRAKVLVLEAIWDRVHTGHFLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAACPIQRRMLYVEIELPVPDNLPYLVC

Query:  LSGKT------------------------------------GSTGIVREVNDVCWLHAVYRAKLADSSGGGV
        +S +T                                    GS GIVR  +DVC +HAV++AK A + GGGV
Subjt:  LSGKT------------------------------------GSTGIVREVNDVCWLHAVYRAKLADSSGGGV

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.1e-1547.3Show/hide
Query:  PRGNRSSVRAKVLVLEAIWDRVHTGHFLLSTLSVLRDNNAVVSAG------------RAPLRQR---RWECWAACPIQRR-----------MLYVEIELP
        PRGNRSS++   L      D+  T  F LSTLSVLRDN+AVVSAG            RAPL +R   RW  W ACP  RR           ++ VEIEL 
Subjt:  PRGNRSSVRAKVLVLEAIWDRVHTGHFLLSTLSVLRDNNAVVSAG------------RAPLRQR---RWECWAACPIQRR-----------MLYVEIELP

Query:  VPDNLPYLVCLS-GKTGSTGIVREVNDVCWLHAVYRAKLADSSGGGVT
        VPD LP     S   + S GIVR  +DVCWLH V+RAK     GG VT
Subjt:  VPDNLPYLVCLS-GKTGSTGIVREVNDVCWLHAVYRAKLADSSGGGVT

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.1e-1547.3Show/hide
Query:  PRGNRSSVRAKVLVLEAIWDRVHTGHFLLSTLSVLRDNNAVVSAG------------RAPLRQR---RWECWAACPIQRR-----------MLYVEIELP
        PRGNRSS++   L      D+  T  F LSTLSVLRDN+AVVSAG            RAPL +R   RW  W ACP  RR           ++ VEIEL 
Subjt:  PRGNRSSVRAKVLVLEAIWDRVHTGHFLLSTLSVLRDNNAVVSAG------------RAPLRQR---RWECWAACPIQRR-----------MLYVEIELP

Query:  VPDNLPYLVCLS-GKTGSTGIVREVNDVCWLHAVYRAKLADSSGGGVT
        VPD LP     S   + S GIVR  +DVCWLH V+RAK     GG VT
Subjt:  VPDNLPYLVCLS-GKTGSTGIVREVNDVCWLHAVYRAKLADSSGGGVT

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-1844.44Show/hide
Query:  PRGNRSSVRAKVLVLEAIWDRVHTGHFLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAACPIQRRMLY----VEIELPVPDNLP----------------
        PRGNR S++ + +    I        F LSTLSVL DN+AVVSAG+APLRQRRWEC          ++    VEIELPVPD LP                
Subjt:  PRGNRSSVRAKVLVLEAIWDRVHTGHFLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAACPIQRRMLY----VEIELPVPDNLP----------------

Query:  ----------YLVCLSGK------TGSTGIVREVNDVCWLHAVYRAKLADSSGGGVTTLYQS
                  Y V L  K        S  IVR  +DVCWLHA++RAK A   GGGVTT YQS
Subjt:  ----------YLVCLSGK------TGSTGIVREVNDVCWLHAVYRAKLADSSGGGVTTLYQS

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase1.2e-1844.44Show/hide
Query:  PRGNRSSVRAKVLVLEAIWDRVHTGHFLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAACPIQRRMLY----VEIELPVPDNLP----------------
        PRGNR S++ + +    I        F LSTLSVL DN+AVVSAG+APLRQRRWEC          ++    VEIELPVPD LP                
Subjt:  PRGNRSSVRAKVLVLEAIWDRVHTGHFLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAACPIQRRMLY----VEIELPVPDNLP----------------

Query:  ----------YLVCLSGK------TGSTGIVREVNDVCWLHAVYRAKLADSSGGGVTTLYQS
                  Y V L  K        S  IVR  +DVCWLHA++RAK A   GGGVTT YQS
Subjt:  ----------YLVCLSGK------TGSTGIVREVNDVCWLHAVYRAKLADSSGGGVTTLYQS

A0A5A7TPS6 Retrotrans_gag domain-containing protein1.7e-2044.19Show/hide
Query:  MVGKLIKFPTTFMKNPPRGNRSSVRAKVLVLEAIWDRVHTGHFLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAACPIQRRMLYVEIELPVPDNLPYLVC
        MVGKLI++PTT MK  PRGNR S++   L    I        F LSTLSVL DN+ VVSAGRA LRQRRWEC            VEIELPVPD LP    
Subjt:  MVGKLIKFPTTFMKNPPRGNRSSVRAKVLVLEAIWDRVHTGHFLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAACPIQRRMLYVEIELPVPDNLPYLVC

Query:  LSGKT------------------------------------GSTGIVREVNDVCWLHAVYRAKLADSSGGGV
        +S +T                                    GS GIVR  +DVC +HAV++AK A + GGGV
Subjt:  LSGKT------------------------------------GSTGIVREVNDVCWLHAVYRAKLADSSGGGV

A0A5A7VGQ5 Uncharacterized protein5.5e-1647.3Show/hide
Query:  PRGNRSSVRAKVLVLEAIWDRVHTGHFLLSTLSVLRDNNAVVSAG------------RAPLRQR---RWECWAACPIQRR-----------MLYVEIELP
        PRGNRSS++   L      D+  T  F LSTLSVLRDN+AVVSAG            RAPL +R   RW  W ACP  RR           ++ VEIEL 
Subjt:  PRGNRSSVRAKVLVLEAIWDRVHTGHFLLSTLSVLRDNNAVVSAG------------RAPLRQR---RWECWAACPIQRR-----------MLYVEIELP

Query:  VPDNLPYLVCLS-GKTGSTGIVREVNDVCWLHAVYRAKLADSSGGGVT
        VPD LP     S   + S GIVR  +DVCWLH V+RAK     GG VT
Subjt:  VPDNLPYLVCLS-GKTGSTGIVREVNDVCWLHAVYRAKLADSSGGGVT

A0A5D3BG85 Uncharacterized protein5.5e-1647.3Show/hide
Query:  PRGNRSSVRAKVLVLEAIWDRVHTGHFLLSTLSVLRDNNAVVSAG------------RAPLRQR---RWECWAACPIQRR-----------MLYVEIELP
        PRGNRSS++   L      D+  T  F LSTLSVLRDN+AVVSAG            RAPL +R   RW  W ACP  RR           ++ VEIEL 
Subjt:  PRGNRSSVRAKVLVLEAIWDRVHTGHFLLSTLSVLRDNNAVVSAG------------RAPLRQR---RWECWAACPIQRR-----------MLYVEIELP

Query:  VPDNLPYLVCLS-GKTGSTGIVREVNDVCWLHAVYRAKLADSSGGGVT
        VPD LP     S   + S GIVR  +DVCWLH V+RAK     GG VT
Subjt:  VPDNLPYLVCLS-GKTGSTGIVREVNDVCWLHAVYRAKLADSSGGGVT

A0A5D3BTP3 Reverse transcriptase1.2e-1844.44Show/hide
Query:  PRGNRSSVRAKVLVLEAIWDRVHTGHFLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAACPIQRRMLY----VEIELPVPDNLP----------------
        PRGNR S++ + +    I        F LSTLSVL DN+AVVSAG+APLRQRRWEC          ++    VEIELPVPD LP                
Subjt:  PRGNRSSVRAKVLVLEAIWDRVHTGHFLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAACPIQRRMLY----VEIELPVPDNLP----------------

Query:  ----------YLVCLSGK------TGSTGIVREVNDVCWLHAVYRAKLADSSGGGVTTLYQS
                  Y V L  K        S  IVR  +DVCWLHA++RAK A   GGGVTT YQS
Subjt:  ----------YLVCLSGK------TGSTGIVREVNDVCWLHAVYRAKLADSSGGGVTTLYQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGAAAGCTTATAAAATTTCCTACAACTTTCATGAAAAACCCGCCAAGAGGAAATAGGTCGAGTGTACGGGCCAAGGTTCTAGTTCTCGAGGCTATATGGGATCG
TGTGCACACAGGTCATTTTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGG
CGGCATGTCCTATACAACGTAGAATGTTATACGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATATTTAGTATGCTTATCAGGTAAAACAGGGTCAACAGGTATC
GTTAGAGAGGTGAACGATGTCTGTTGGCTTCACGCCGTCTACCGGGCTAAGTTAGCAGATAGTTCGGGAGGGGGTGTGACAACTTTGTATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGAAAGCTTATAAAATTTCCTACAACTTTCATGAAAAACCCGCCAAGAGGAAATAGGTCGAGTGTACGGGCCAAGGTTCTAGTTCTCGAGGCTATATGGGATCG
TGTGCACACAGGTCATTTTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGG
CGGCATGTCCTATACAACGTAGAATGTTATACGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATATTTAGTATGCTTATCAGGTAAAACAGGGTCAACAGGTATC
GTTAGAGAGGTGAACGATGTCTGTTGGCTTCACGCCGTCTACCGGGCTAAGTTAGCAGATAGTTCGGGAGGGGGTGTGACAACTTTGTATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MVGKLIKFPTTFMKNPPRGNRSSVRAKVLVLEAIWDRVHTGHFLLSTLSVLRDNNAVVSAGRAPLRQRRWECWAACPIQRRMLYVEIELPVPDNLPYLVCLSGKTGSTGI
VREVNDVCWLHAVYRAKLADSSGGGVTTLYQSS