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Tan0017397 (gene) of Snake gourd v1 genome

Gene IDTan0017397
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibosomal L18p/L5e family protein
Genome locationLG06:25933569..25934976
RNA-Seq ExpressionTan0017397
SyntenyTan0017397
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140885.1 uncharacterized protein LOC101204363 [Cucumis sativus]1.5e-5693.65Show/hide
Query:  MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM
        MS +QNHLLRLVLSCRKITAQV+NPATSSIIAMASSSEQEFVAYYRSKLHRFPRS NFWDSKVASRVGEKLG RLKEIGVSDVRIDLAEELSRP+YYRKM
Subjt:  MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVRRSGVAVDGAEKLGTGAI
        VLPLFDSV+RSGVAVDGAEKLGTG+I
Subjt:  VLPLFDSVRRSGVAVDGAEKLGTGAI
XP_038884095.1 uncharacterized protein LOC120075027 isoform X2 [Benincasa hispida]1.7e-5593.55Show/hide
Query:  MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM
        MS SQNHLLRLVLSCRKITAQV+NPATSSI+AMASSSEQEFVAYYRSKLHRFPRS NFWDSKVASRVGEKLG RLKEIGVSDVRIDLAEE SRP+YYRKM
Subjt:  MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVRRSGVAVDGAEKLGTG
        VLPLFDSV+RSGVAVDGAEKLGTG
Subjt:  VLPLFDSVRRSGVAVDGAEKLGTG
XP_038884096.1 uncharacterized protein LOC120075027 isoform X3 [Benincasa hispida]1.7e-5593.55Show/hide
Query:  MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM
        MS SQNHLLRLVLSCRKITAQV+NPATSSI+AMASSSEQEFVAYYRSKLHRFPRS NFWDSKVASRVGEKLG RLKEIGVSDVRIDLAEE SRP+YYRKM
Subjt:  MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVRRSGVAVDGAEKLGTG
        VLPLFDSV+RSGVAVDGAEKLGTG
Subjt:  VLPLFDSVRRSGVAVDGAEKLGTG
XP_038884098.1 uncharacterized protein LOC120075027 isoform X5 [Benincasa hispida]1.7e-5593.55Show/hide
Query:  MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM
        MS SQNHLLRLVLSCRKITAQV+NPATSSI+AMASSSEQEFVAYYRSKLHRFPRS NFWDSKVASRVGEKLG RLKEIGVSDVRIDLAEE SRP+YYRKM
Subjt:  MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVRRSGVAVDGAEKLGTG
        VLPLFDSV+RSGVAVDGAEKLGTG
Subjt:  VLPLFDSVRRSGVAVDGAEKLGTG
XP_038884099.1 uncharacterized protein LOC120075027 isoform X6 [Benincasa hispida]1.7e-5593.55Show/hide
Query:  MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM
        MS SQNHLLRLVLSCRKITAQV+NPATSSI+AMASSSEQEFVAYYRSKLHRFPRS NFWDSKVASRVGEKLG RLKEIGVSDVRIDLAEE SRP+YYRKM
Subjt:  MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVRRSGVAVDGAEKLGTG
        VLPLFDSV+RSGVAVDGAEKLGTG
Subjt:  VLPLFDSVRRSGVAVDGAEKLGTG
TrEMBL top hitse value%identityAlignment
A0A0A0KE39 Uncharacterized protein7.4e-5793.65Show/hide
Query:  MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM
        MS +QNHLLRLVLSCRKITAQV+NPATSSIIAMASSSEQEFVAYYRSKLHRFPRS NFWDSKVASRVGEKLG RLKEIGVSDVRIDLAEELSRP+YYRKM
Subjt:  MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVRRSGVAVDGAEKLGTGAI
        VLPLFDSV+RSGVAVDGAEKLGTG+I
Subjt:  VLPLFDSVRRSGVAVDGAEKLGTGAI
A0A1S4DVU4 uncharacterized protein LOC1034886721.2e-5490.48Show/hide
Query:  MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM
        MS +QNHLLRLVLSCRKITAQV+NPATSSIIAMASSSEQEFVAYYRSKLHRFPRS NFWDSKVASRVG KLG RLKEIGVSDVRIDLAEELSRP+YYRKM
Subjt:  MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVRRSGVAVDGAEKLGTGAI
        VLPLFDSV+RSG+AVDG EKLG G+I
Subjt:  VLPLFDSVRRSGVAVDGAEKLGTGAI
A0A5D3BWW4 Uncharacterized protein1.2e-5490.48Show/hide
Query:  MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM
        MS +QNHLLRLVLSCRKITAQV+NPATSSIIAMASSSEQEFVAYYRSKLHRFPRS NFWDSKVASRVG KLG RLKEIGVSDVRIDLAEELSRP+YYRKM
Subjt:  MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVRRSGVAVDGAEKLGTGAI
        VLPLFDSV+RSG+AVDG EKLG G+I
Subjt:  VLPLFDSVRRSGVAVDGAEKLGTGAI
A0A6J1EVG7 uncharacterized protein LOC1114363403.2e-5288.89Show/hide
Query:  MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM
        MS +QNHLLRLVLSCRKITAQV+NP TS+IIAMASSSEQEFVAY RSKLHRFPRS NFWDSK+ASRVGEKLG RLKEIGVSDVRIDLAEELSRPV YR  
Subjt:  MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVRRSGVAVDGAEKLGTGAI
        VLPLFDSVRRSGVAV+GAEKLG+GAI
Subjt:  VLPLFDSVRRSGVAVDGAEKLGTGAI
A0A6J1JZ79 uncharacterized protein LOC1114887451.0e-5389.68Show/hide
Query:  MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM
        MS +QNHLLRLVLSCRKITAQV+NP TS+IIAMASSSEQEFVAYY SKLHRFPRS NFWDSK+ASRVGEKLG RLKEIGVSDVRIDLAEELSRPVYYR  
Subjt:  MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVRRSGVAVDGAEKLGTGAI
        VLPLFDSVRRSGVAV+GAEKLG+GAI
Subjt:  VLPLFDSVRRSGVAVDGAEKLGTGAI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G43310.1 Ribosomal L18p/L5e family protein1.5e-4169.75Show/hide
Query:  TSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVL
        T ++HLL+LVLSCRKITAQV+ P +S+IIAMASSSEQEF+A  R+ L+RFP S +FWDSK ASRVGEKLGLRL+E+GV  V ID  EE+SRP+++RK VL
Subjt:  TSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVL

Query:  PLFDSVRRSGVAVDGAEKL
        PLFDSVRR+G+ VDG E+L
Subjt:  PLFDSVRRSGVAVDGAEKL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACAAGTCAGAACCACCTCCTCCGCCTGGTTCTTTCCTGCCGGAAAATCACCGCTCAGGTCTCCAATCCGGCCACCTCCTCCATCATTGCCATGGCCTCCTCCTC
CGAGCAGGAATTCGTCGCCTACTACCGCTCTAAACTCCACCGTTTTCCTCGATCCTACAACTTTTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTCGGCCTCC
GTTTGAAGGAAATCGGCGTCTCCGATGTTCGGATCGATCTCGCCGAGGAGCTTTCGCGCCCTGTCTACTATCGGAAGATGGTTCTGCCGCTCTTCGATTCGGTTCGGCGC
TCCGGCGTCGCCGTCGACGGCGCTGAGAAGCTTGGAACAGGTGCGATCTAG
mRNA sequenceShow/hide mRNA sequence
GTCAAACAAAGGGCAGAACAAAGCAGAAGCCGATTTAGAAGCCCTAATAAATACTCAAATTTCTTGCGCTCCACTAACTTCCATGTCCACAAGTCAGAACCACCTCCTCC
GCCTGGTTCTTTCCTGCCGGAAAATCACCGCTCAGGTCTCCAATCCGGCCACCTCCTCCATCATTGCCATGGCCTCCTCCTCCGAGCAGGAATTCGTCGCCTACTACCGC
TCTAAACTCCACCGTTTTCCTCGATCCTACAACTTTTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTCGGCCTCCGTTTGAAGGAAATCGGCGTCTCCGATGT
TCGGATCGATCTCGCCGAGGAGCTTTCGCGCCCTGTCTACTATCGGAAGATGGTTCTGCCGCTCTTCGATTCGGTTCGGCGCTCCGGCGTCGCCGTCGACGGCGCTGAGA
AGCTTGGAACAGGTGCGATCTAGCCTCGATTTTTCTGTTTTGATCGGAGTTTATACGGTTCGCGATTGAGATTGAATTTAGGGCACATATGACATATGACTGATTCCTTC
TCCTCCACGTCGATGAGTATACGAATTTTGACACATTTTCGATCTCTTTCTCTTTTTTTTTTTTTTCCTTCGATTAAAAATGTAATAATAATATTTTTGTAATGATTAAT
TAAAGGAAAACAATTGTCTCTGTGGAATTTAGCCCATTTATCTGTAGCTCTTTCACTGGGAGAGGAAGATAAAAAAGGACTTGTGTAGAAAATGAAGTGATTTTGTTTTT
CCTTTTGAGTACGGAAGTAATAATCTCTCTTCGTTTCTGTACTTTTTGTTAGACGTTTAGTAAAATCGAAATGGAAGAAAAAAATGGAGTGTGATTGTTGATGTGCAGAT
TTGGGCTGGATGGATTGCCTAGGATCGGTAGAATCATCGACCAAGGGGCGTTCACGAGTTGAGTTGGAGGGAATTTGAAATTTCGAGTTGAAGATATAGCCAACTTGGAC
AGACCAAATTTATATTGGAACCCAATCCAACCCAATACTAGTAAAGTTGGTTTGTTCCAGTTGGGTCATGAAGGATGAATAAAATCCATTAAAACATGATTTGCAAGTCA
TGACGAGGGAGATCGATGACATTGCTAGTGTTTGGCAAGGTCGGCCAACGAAGAGATAAATGAAAAATGGAAGGTGTTGATACCAGAATTTGGATCAGCAAATTAACGAT
GAATTTATAATCATTGGAATTGGAATGTGTTTGCAAAATGAAAAAACTGAGCATCGAGATAACCAGGTTATAGAGGAGACAATGTGATTGGGATCAATATCCTAGGCGTA
TAGCAACTTGGGGACAAAGCGTCCATAATGCTAATGTTAATCCTCCGGTGGAACTCAGTCGATCTACAACAAAGAAGTGAAGTAGAAG
Protein sequenceShow/hide protein sequence
MSTSQNHLLRLVLSCRKITAQVSNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSYNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRR
SGVAVDGAEKLGTGAI