CuGenDBv2

Gene ID	Tan0017398
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA ligase 1
Genome location	LG05:84840404..84842997
RNA-Seq Expression	Tan0017398
Synteny	Tan0017398
Gene Ontology terms	GO:0007131 - reciprocal meiotic recombination (biological process) GO:0099086 - synaptonemal structure (cellular component) GO:0016874 - ligase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004146600.1 DNA ligase 1 isoform X1 [Cucumis sativus]

7.0e-94

90.28

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Query:  MGNMKLPTAKTRTRKR--DSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKAL
        MGN+K+PTAKTR+RKR  D+DL+SSDQRK+ NDDI LDLDLSDDLKGI+SALNQI+ERA KDD KKNEETISSVATE+R MIEEVKSK EKDRQ+FAKAL
Subjt:  MGNMKLPTAKTRTRKR--DSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQALYEK TKEKATHLQAIKDTISKFEEEKE+LFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPADD
        GSFL+TGSDEDFPADD
Subjt:  GSFLETGSDEDFPADD

XP_022140180.1 DNA ligase 1 [Momordica charantia]

5.4e-94

90.28

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Query:  MGNMKLPTAKTRTRKR--DSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKAL
        MGN+K+PTAKTRTRKR  D DLTSSDQRKR  +DI LDLDLSDDLKGI+SALNQIRE+AQKDDQKKNEETISSV++EIR MIEEVKSKFEKDRQSFAKAL
Subjt:  MGNMKLPTAKTRTRKR--DSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQAL+EK TKE+ATHLQAIKDTISKFEEEKE+LFAKYEQLRKRER+LISEQEKACA+KIAQLEESLKRKKQDDKTFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPADD
        GSFLETGSDEDFPA+D
Subjt:  GSFLETGSDEDFPADD

XP_022927498.1 DNA ligase 1 [Cucurbita moschata]

1.3e-95

92.13

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Query:  MGNMKLPTAKTRTRKR--DSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKAL
        MGNMK+P AKTRTRKR  DSDLTSSD+RKR N+DI LDLDLSDDLKGI+SALNQI+ERAQKDDQKKNEETISSV+TEIR MIEEVKSKFEKDRQSFAKAL
Subjt:  MGNMKLPTAKTRTRKR--DSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQALYEK TKEKATHLQA+KDTISKFEEEKE+LFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDD+TFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPADD
        GSFLETGSDEDF ADD
Subjt:  GSFLETGSDEDFPADD

XP_023001751.1 DNA ligase 1 [Cucurbita maxima]

1.7e-95

91.67

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Query:  MGNMKLPTAKTRTRKR--DSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKAL
        MGNMK+P AKTRTRKR  D DLTSSD+RKR N+DI LDLDLSDDLKGI+SALNQI+ERAQKDDQKKNEETISSV+TEIR MIEEVKSKFEKDRQSFAKAL
Subjt:  MGNMKLPTAKTRTRKR--DSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQALYEK TKEKATHLQA+KDTISKFEEEKE+LFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDD+TFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPADD
        GSFLETGSDEDFP DD
Subjt:  GSFLETGSDEDFPADD

XP_023520366.1 DNA ligase 1 [Cucurbita pepo subsp. pepo]

1.3e-95

92.13

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Query:  MGNMKLPTAKTRTRKR--DSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKAL
        MGNMK+P AKTRTRKR  +SDLTSSD+RKR N+DI LDLDLSDDLKGI+SALNQI+ERAQKDDQKKNEETISSV+TEIRAMIEEVKSKFEKDRQSFAKAL
Subjt:  MGNMKLPTAKTRTRKR--DSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQALYEK TKEKATHLQA+KDTISKFEEEKE+LFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDD+TFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPADD
        GSFLETGSDEDF ADD
Subjt:  GSFLETGSDEDFPADD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LRW7 Uncharacterized protein

3.4e-94

90.28

Show/hide

Query:  MGNMKLPTAKTRTRKR--DSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKAL
        MGN+K+PTAKTR+RKR  D+DL+SSDQRK+ NDDI LDLDLSDDLKGI+SALNQI+ERA KDD KKNEETISSVATE+R MIEEVKSK EKDRQ+FAKAL
Subjt:  MGNMKLPTAKTRTRKR--DSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQALYEK TKEKATHLQAIKDTISKFEEEKE+LFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPADD
        GSFL+TGSDEDFPADD
Subjt:  GSFLETGSDEDFPADD

A0A5D3DS94 DNA ligase 1 isoform X1

6.4e-93

89.81

Show/hide

Query:  MGNMKLPTAKTRTRKR--DSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKAL
        M N+K+PTAKTR+RKR  D+DLTSS+QR R NDDI LDLDLSDDLKGI+SALNQI+ERA KDD KKNEETISSVATE+R MIEEVKSK EKDRQ+FAKAL
Subjt:  MGNMKLPTAKTRTRKR--DSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQALYEK TKEKATHLQAIKDTISKFEEEKE+LFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPADD
        GSFL+TGSDEDFPADD
Subjt:  GSFLETGSDEDFPADD

A0A6J1CEE2 DNA ligase 1

2.6e-94

90.28

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Query:  MGNMKLPTAKTRTRKR--DSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKAL
        MGN+K+PTAKTRTRKR  D DLTSSDQRKR  +DI LDLDLSDDLKGI+SALNQIRE+AQKDDQKKNEETISSV++EIR MIEEVKSKFEKDRQSFAKAL
Subjt:  MGNMKLPTAKTRTRKR--DSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQAL+EK TKE+ATHLQAIKDTISKFEEEKE+LFAKYEQLRKRER+LISEQEKACA+KIAQLEESLKRKKQDDKTFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPADD
        GSFLETGSDEDFPA+D
Subjt:  GSFLETGSDEDFPADD

A0A6J1EL64 DNA ligase 1

6.2e-96

92.13

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Query:  MGNMKLPTAKTRTRKR--DSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKAL
        MGNMK+P AKTRTRKR  DSDLTSSD+RKR N+DI LDLDLSDDLKGI+SALNQI+ERAQKDDQKKNEETISSV+TEIR MIEEVKSKFEKDRQSFAKAL
Subjt:  MGNMKLPTAKTRTRKR--DSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQALYEK TKEKATHLQA+KDTISKFEEEKE+LFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDD+TFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPADD
        GSFLETGSDEDF ADD
Subjt:  GSFLETGSDEDFPADD

A0A6J1KJH3 DNA ligase 1

8.1e-96

91.67

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Query:  MGNMKLPTAKTRTRKR--DSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKAL
        MGNMK+P AKTRTRKR  D DLTSSD+RKR N+DI LDLDLSDDLKGI+SALNQI+ERAQKDDQKKNEETISSV+TEIR MIEEVKSKFEKDRQSFAKAL
Subjt:  MGNMKLPTAKTRTRKR--DSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL
        SKSSKECENCLKDETAKFQALYEK TKEKATHLQA+KDTISKFEEEKE+LFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDD+TFSLLRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTL

Query:  GSFLETGSDEDFPADD
        GSFLETGSDEDFP DD
Subjt:  GSFLETGSDEDFPADD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G33793.1 unknown protein

1.2e-59

59.53

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Query:  MGNMKLPTAKTRTRKRDSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKALSK
        M + +  T +TR     S    + + K  ++   LD+D+S D KGIMSAL Q RE+A +D +KK EE+ISSV+TE+++ I+E+KSK EK+RQ+F+KALSK
Subjt:  MGNMKLPTAKTRTRKRDSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKALSK

Query:  SSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTLGS
        SSKECEN LKDE AKF+ L++K  K+KA HLQ +KDTISKFEE+KE+L+ +YEQLRK+E+++I+EQEK C EK+AQLEESLK+KK+ DKTFS+LRKTLGS
Subjt:  SSKECENCLKDETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTLGS

Query:  FLET-GSDEDFPADD
        FLE   SDE+FP D+
Subjt:  FLET-GSDEDFPADD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGAAACATGAAATTGCCTACTGCTAAAACAAGAACCAGGAAGCGAGACTCCGATCTCACGAGCTCCGATCAAAGGAAGCGGAACAACGATGATATCAGCCTCGATCT
CGACCTTTCCGACGATCTCAAAGGGATAATGTCGGCACTGAATCAGATCAGAGAGAGAGCTCAGAAGGACGATCAGAAGAAGAATGAAGAGACTATCTCAAGTGTAGCGA
CTGAGATAAGAGCAATGATTGAGGAGGTGAAATCTAAATTTGAAAAGGACAGGCAAAGTTTTGCAAAAGCACTATCGAAAAGCTCAAAAGAGTGTGAAAACTGCTTGAAG
GACGAAACTGCTAAATTCCAAGCACTTTACGAGAAATTAACAAAAGAGAAAGCCACACATCTCCAGGCCATAAAAGATACCATTTCCAAATTTGAAGAGGAGAAAGAAAA
GCTATTCGCAAAATATGAACAATTGAGAAAGAGAGAAAGAAGTCTTATATCTGAGCAAGAGAAAGCTTGTGCTGAAAAAATTGCTCAATTGGAGGAGTCTTTGAAAAGGA
AAAAGCAGGATGATAAGACTTTCAGCCTTTTGCGGAAGACTCTTGGTTCATTTCTGGAAACTGGTTCAGATGAGGACTTCCCAGCTGACGATTGA

mRNA sequence

Show/hide mRNA sequence

ATCGCATTTCAGCAGGATATTTATAAGTCTTGGTAATTCAAAATTCCAAACGCTTCGAAACTATACGGTTCCCAAATCTTCAATTCTAAAGTTCTCTTCAACCTCTGTTC
AGATGGGAAACATGAAATTGCCTACTGCTAAAACAAGAACCAGGAAGCGAGACTCCGATCTCACGAGCTCCGATCAAAGGAAGCGGAACAACGATGATATCAGCCTCGAT
CTCGACCTTTCCGACGATCTCAAAGGGATAATGTCGGCACTGAATCAGATCAGAGAGAGAGCTCAGAAGGACGATCAGAAGAAGAATGAAGAGACTATCTCAAGTGTAGC
GACTGAGATAAGAGCAATGATTGAGGAGGTGAAATCTAAATTTGAAAAGGACAGGCAAAGTTTTGCAAAAGCACTATCGAAAAGCTCAAAAGAGTGTGAAAACTGCTTGA
AGGACGAAACTGCTAAATTCCAAGCACTTTACGAGAAATTAACAAAAGAGAAAGCCACACATCTCCAGGCCATAAAAGATACCATTTCCAAATTTGAAGAGGAGAAAGAA
AAGCTATTCGCAAAATATGAACAATTGAGAAAGAGAGAAAGAAGTCTTATATCTGAGCAAGAGAAAGCTTGTGCTGAAAAAATTGCTCAATTGGAGGAGTCTTTGAAAAG
GAAAAAGCAGGATGATAAGACTTTCAGCCTTTTGCGGAAGACTCTTGGTTCATTTCTGGAAACTGGTTCAGATGAGGACTTCCCAGCTGACGATTGAAGGTATTAATGGA
TTGGCCAATGCTGAAAACATTCATGTTTGATTACTCTGCATCACTCTCTTAATTACTCGGAAATCAGTATGCTATCTCTCTCTCTATCTCACAGACAAAAGATTTGCATT
GCTTAAGTATCTAGTTTACATTCTCGTACAAGCATGTTTCTCTTGAGGATTGGTAGTTCTCTTATTAGTATAGATTGTAAATTGCAGTACTAAATTGAGCGTTAAAGGCC
AGTTCCTTAACTTTAATTGTTCGCCTTACGGCTGTAGCTGCTTTGCCTCTTTAACAATTCCGCTGATCTCTGTGAATTCTGAAGTCAATCTTCATTTCCAAGATTGCATC
ATCTCTATTAAGCTTTTGGGTCATTCCTAATCATGACATTGTGTACTTAAAAATCAAAATGTTGGGA

Protein sequence

Show/hide protein sequence

MGNMKLPTAKTRTRKRDSDLTSSDQRKRNNDDISLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRAMIEEVKSKFEKDRQSFAKALSKSSKECENCLK
DETAKFQALYEKLTKEKATHLQAIKDTISKFEEEKEKLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD

Tan0017398 (gene) of Snake gourd v1 genome