; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0017447 (gene) of Snake gourd v1 genome

Gene IDTan0017447
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionchaperonin-like RBCX protein 1, chloroplastic
Genome locationLG03:77020373..77022025
RNA-Seq ExpressionTan0017447
SyntenyTan0017447
Gene Ontology termsGO:0006270 - DNA replication initiation (biological process)
GO:0009409 - response to cold (biological process)
GO:0009414 - response to water deprivation (biological process)
GO:0009651 - response to salt stress (biological process)
GO:0015977 - carbon fixation (biological process)
GO:0015979 - photosynthesis (biological process)
GO:0110102 - chloroplast ribulose bisphosphate carboxylase complex assembly (biological process)
GO:0033314 - mitotic DNA replication checkpoint (biological process)
GO:0061077 - chaperone-mediated protein folding (biological process)
GO:0005664 - nuclear origin of replication recognition complex (cellular component)
GO:0009534 - chloroplast thylakoid (cellular component)
GO:0044183 - protein folding chaperone (molecular function)
GO:0016887 - ATPase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0003688 - DNA replication origin binding (molecular function)
InterPro domainsIPR038052 - Chaperonin-like RbcX superfamily
IPR003435 - Chaperonin-like RbcX


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134778.1 chaperonin-like RBCX protein 1, chloroplastic [Cucumis sativus]1.4e-7987.86Show/hide
Query:  MASSSMMLSPTQFPSLFPLPNFNRSNLFPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRH
        M SS+ +LSPTQFPSLF LPN NR N+FPV P KP+A K MRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLESYNPEAY ELMEFLDRH
Subjt:  MASSSMMLSPTQFPSLFPLPNFNRSNLFPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTEK
        SLNDGDKFLASLMRESSRHK+LALRILEVRSAYCKNDFEWDNL+RLAFKMVSESNTR+MREY+TETSPSDTEK
Subjt:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTEK

XP_008440039.1 PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo]1.6e-8088.44Show/hide
Query:  MASSSMMLSPTQFPSLFPLPNFNRSNLFPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRH
        M SS+ +LSPTQFPS+F LPN NR N+FPV P KP+ASKSMRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLESYNPEAY ELMEFLDRH
Subjt:  MASSSMMLSPTQFPSLFPLPNFNRSNLFPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTEK
        SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNL+RLAFKMV ESNTR+MREY+TETSPSDTEK
Subjt:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTEK

XP_022132911.1 chaperonin-like RBCX protein 1, chloroplastic [Momordica charantia]3.3e-7886.86Show/hide
Query:  MASSSMMLSPTQFPSLFPLPNFNRSNLFPVWPKKPKASK--SMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLD
        M SS+ +LSPTQFPSLFPLPN NRS +FP+WP KPKASK   ++L C+KMYVPGFGEASPEAKAAKNLHNFFTYVAVRIV AQLESYNPEA+ ELMEFLD
Subjt:  MASSSMMLSPTQFPSLFPLPNFNRSNLFPVWPKKPKASK--SMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTEK
        RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNL+RLA KM SESNTRLMREYVTETSPS+TEK
Subjt:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTEK

XP_023003335.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita maxima]2.3e-7988.44Show/hide
Query:  MASSSMMLSPTQFPSLFPLPNFNRSNLFPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRH
        M S + +LSPT FPSLFPLPN NRSN  PVWPKKP+ASKS+RLHC+KMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEA+TELMEFLDRH
Subjt:  MASSSMMLSPTQFPSLFPLPNFNRSNLFPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTEK
        SLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNL+RLA KMV ESNTRLMREYVTETSP D EK
Subjt:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTEK

XP_038881664.1 chaperonin-like RBCX protein 1, chloroplastic isoform X1 [Benincasa hispida]3.1e-8491.91Show/hide
Query:  MASSSMMLSPTQFPSLFPLPNFNRSNLFPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRH
        M  S+ +LS TQFPSLFPLPN NRSN+FPVWPKKPKA+KSMRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLESYNPEAY ELMEFLDRH
Subjt:  MASSSMMLSPTQFPSLFPLPNFNRSNLFPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTEK
        SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNL+RLAFKMVSESNTRLMREYVTETSPSDTEK
Subjt:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTEK

TrEMBL top hitse value%identityAlignment
A0A0A0KMZ4 Uncharacterized protein6.6e-8087.86Show/hide
Query:  MASSSMMLSPTQFPSLFPLPNFNRSNLFPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRH
        M SS+ +LSPTQFPSLF LPN NR N+FPV P KP+A K MRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLESYNPEAY ELMEFLDRH
Subjt:  MASSSMMLSPTQFPSLFPLPNFNRSNLFPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTEK
        SLNDGDKFLASLMRESSRHK+LALRILEVRSAYCKNDFEWDNL+RLAFKMVSESNTR+MREY+TETSPSDTEK
Subjt:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTEK

A0A1S3B054 uncharacterized protein LOC1034846357.8e-8188.44Show/hide
Query:  MASSSMMLSPTQFPSLFPLPNFNRSNLFPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRH
        M SS+ +LSPTQFPS+F LPN NR N+FPV P KP+ASKSMRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLESYNPEAY ELMEFLDRH
Subjt:  MASSSMMLSPTQFPSLFPLPNFNRSNLFPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTEK
        SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNL+RLAFKMV ESNTR+MREY+TETSPSDTEK
Subjt:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTEK

A0A5D3CNU4 Chaperonin-like RBCX protein 17.8e-8188.44Show/hide
Query:  MASSSMMLSPTQFPSLFPLPNFNRSNLFPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRH
        M SS+ +LSPTQFPS+F LPN NR N+FPV P KP+ASKSMRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLESYNPEAY ELMEFLDRH
Subjt:  MASSSMMLSPTQFPSLFPLPNFNRSNLFPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTEK
        SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNL+RLAFKMV ESNTR+MREY+TETSPSDTEK
Subjt:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTEK

A0A6J1BTL5 chaperonin-like RBCX protein 1, chloroplastic1.6e-7886.86Show/hide
Query:  MASSSMMLSPTQFPSLFPLPNFNRSNLFPVWPKKPKASK--SMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLD
        M SS+ +LSPTQFPSLFPLPN NRS +FP+WP KPKASK   ++L C+KMYVPGFGEASPEAKAAKNLHNFFTYVAVRIV AQLESYNPEA+ ELMEFLD
Subjt:  MASSSMMLSPTQFPSLFPLPNFNRSNLFPVWPKKPKASK--SMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTEK
        RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNL+RLA KM SESNTRLMREYVTETSPS+TEK
Subjt:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTEK

A0A6J1KRH1 chaperonin-like RBCX protein 1, chloroplastic1.1e-7988.44Show/hide
Query:  MASSSMMLSPTQFPSLFPLPNFNRSNLFPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRH
        M S + +LSPT FPSLFPLPN NRSN  PVWPKKP+ASKS+RLHC+KMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEA+TELMEFLDRH
Subjt:  MASSSMMLSPTQFPSLFPLPNFNRSNLFPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTEK
        SLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNL+RLA KMV ESNTRLMREYVTETSP D EK
Subjt:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTEK

SwissProt top hitse value%identityAlignment
Q44177 RuBisCO chaperone RbcX3.5e-0631.9Show/hide
Query:  KAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESN---TR
        + A  L ++ TY AVR+++ QL   NP     L EF  RH + + D +L ++M E   +K L LRIL VR    +   E+  L  +    + +SN    R
Subjt:  KAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESN---TR

Query:  LMREYVTETSPSDTEK
         + E +T+   S T++
Subjt:  LMREYVTETSPSDTEK

Q8L9X2 Chaperonin-like RbcX protein 2, chloroplastic1.1e-0436.36Show/hide
Query:  KNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVR-SAYCKNDFEWDNLQRLAFKMVSESNTRLMREY
        K + N+FTY AVR V  QL   NP  YT     +  +   DG +FL +L +ES   + LA R++  R   Y K   + D+ +   ++ +S+ N  LMRE 
Subjt:  KNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVR-SAYCKNDFEWDNLQRLAFKMVSESNTRLMREY

Query:  VTETS--PSD
        + ET   PSD
Subjt:  VTETS--PSD

Q94AU9 Chaperonin-like RBCX protein 1, chloroplastic6.0e-5466.67Show/hide
Query:  MASSSMMLSPTQFPSLFPLPNFNRSNL--FPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLD
        M SSS +L  +    L   P F +  L  +P+     K  K  R+  NKMYVPGFGEASPEAKAAK+LH+FFTYVAVRIV+AQLESYNPEAY EL EFLD
Subjt:  MASSSMMLSPTQFPSLFPLPNFNRSNL--FPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTE
         +S++DGDKF A+LMR SSRH +LALRILEVRSAYCKNDFEWDN++RLAFK V +SNTRLMREYV ETS  +T+
Subjt:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTE

Arabidopsis top hitse value%identityAlignment
AT4G04330.1 Chaperonin-like RbcX protein4.2e-5566.67Show/hide
Query:  MASSSMMLSPTQFPSLFPLPNFNRSNL--FPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLD
        M SSS +L  +    L   P F +  L  +P+     K  K  R+  NKMYVPGFGEASPEAKAAK+LH+FFTYVAVRIV+AQLESYNPEAY EL EFLD
Subjt:  MASSSMMLSPTQFPSLFPLPNFNRSNL--FPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTE
         +S++DGDKF A+LMR SSRH +LALRILEVRSAYCKNDFEWDN++RLAFK V +SNTRLMREYV ETS  +T+
Subjt:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTE

AT5G19855.1 Chaperonin-like RbcX protein8.1e-0636.36Show/hide
Query:  KNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVR-SAYCKNDFEWDNLQRLAFKMVSESNTRLMREY
        K + N+FTY AVR V  QL   NP  YT     +  +   DG +FL +L +ES   + LA R++  R   Y K   + D+ +   ++ +S+ N  LMRE 
Subjt:  KNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVR-SAYCKNDFEWDNLQRLAFKMVSESNTRLMREY

Query:  VTETS--PSD
        + ET   PSD
Subjt:  VTETS--PSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCGTCTTCAATGATGCTTTCCCCTACTCAATTCCCTTCTCTTTTCCCACTACCCAATTTCAACAGAAGCAATCTTTTTCCAGTTTGGCCAAAAAAGCCAAAAGC
TTCCAAGTCTATGCGCTTGCATTGCAATAAGATGTATGTCCCCGGGTTTGGAGAAGCGTCGCCAGAAGCAAAGGCAGCTAAAAATCTGCACAATTTCTTCACGTATGTTG
CTGTTAGGATCGTGACTGCGCAACTTGAGAGCTATAATCCAGAGGCGTACACAGAGTTAATGGAGTTTCTTGATAGGCATTCTCTGAATGATGGCGACAAGTTCCTGGCC
AGTTTGATGCGGGAATCGTCGAGGCATAAGAGTCTTGCATTGCGCATACTAGAGGTTCGATCTGCATACTGCAAAAACGATTTTGAGTGGGACAACCTCCAGCGATTAGC
TTTCAAAATGGTTAGTGAATCCAACACGAGACTGATGAGGGAATATGTGACGGAGACGAGTCCATCCGATACCGAGAAGTGA
mRNA sequenceShow/hide mRNA sequence
GAGATTTGGGAAGCTTGAGGTGGATGGAAAAGATATTTTCCAGTTTCTACAGAAAGCATAAGCTTTGGAACGCTCTCTCTCTCAGTTTCTGGTTCCAGTTTTCTTCCGAA
GCAATTTTGACAAAGCTCGAGATTATCTATGGCATCGTCTTCAATGATGCTTTCCCCTACTCAATTCCCTTCTCTTTTCCCACTACCCAATTTCAACAGAAGCAATCTTT
TTCCAGTTTGGCCAAAAAAGCCAAAAGCTTCCAAGTCTATGCGCTTGCATTGCAATAAGATGTATGTCCCCGGGTTTGGAGAAGCGTCGCCAGAAGCAAAGGCAGCTAAA
AATCTGCACAATTTCTTCACGTATGTTGCTGTTAGGATCGTGACTGCGCAACTTGAGAGCTATAATCCAGAGGCGTACACAGAGTTAATGGAGTTTCTTGATAGGCATTC
TCTGAATGATGGCGACAAGTTCCTGGCCAGTTTGATGCGGGAATCGTCGAGGCATAAGAGTCTTGCATTGCGCATACTAGAGGTTCGATCTGCATACTGCAAAAACGATT
TTGAGTGGGACAACCTCCAGCGATTAGCTTTCAAAATGGTTAGTGAATCCAACACGAGACTGATGAGGGAATATGTGACGGAGACGAGTCCATCCGATACCGAGAAGTGA
CGAAATTCTGTACCTTCTTCTCTTTTTGCAGTTATACAGGAGAGGATACATAAAATCCTCTTGTGTTTATAGTATGATATGAGAGCAAACATTATGCAAATGTTTTTCAG
GGCTTTATACCAAACAAAATTTGGCTAACCGAATGATGGGAATATATACAGAGACATTCATTCTGGATTCTTCTTGCGAGCTACAAAACAATATTTACCACAATTTAGAT
TGCTCAGATGTTGTAAAGCTTTTAAAGTACTCACCTGTTGCAAATTGATTAACGGCACCTCGCCTCAATGTTCTAATAATTCTGAACAAGCTCCAGTTTGAAAACTAGTG
TCTTGCGCTTTGCACATACATAAATAATACGGAAGATTCAATGATATGTTTAAAAGAAATCAGAAGAATAATAAGATTCAAGATGTG
Protein sequenceShow/hide protein sequence
MASSSMMLSPTQFPSLFPLPNFNRSNLFPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAYTELMEFLDRHSLNDGDKFLA
SLMRESSRHKSLALRILEVRSAYCKNDFEWDNLQRLAFKMVSESNTRLMREYVTETSPSDTEK