CuGenDBv2

Gene ID	Tan0017476
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ribulose bisphosphate carboxylase large chain
Genome location	Contig00124:157428..158007
RNA-Seq Expression	Tan0017476
Synteny	Tan0017476
Gene Ontology terms	GO:0009853 - photorespiration (biological process) GO:0019253 - reductive pentose-phosphate cycle (biological process) GO:0009507 - chloroplast (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0004497 - monooxygenase activity (molecular function) GO:0016984 - ribulose-bisphosphate carboxylase activity (molecular function)
InterPro domains	IPR017443 - Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal IPR033966 - RuBisCO IPR036422 - RuBisCO large subunit, N-terminal domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AAZ94659.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Cucumis sativus]

8.2e-73

95.89

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Query:  MSCREGLMSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE
        MSCREGLMSPQTETKASVGFKAGVKD KLTYYT EYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE
Subjt:  MSCREGLMSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE

Query:  ENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK
        ENQYIAYVAYPLDLFEEGSVTNM TSIVGNVFGFKALRALRLE ++
Subjt:  ENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK

QJD26304.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Trichosanthes kirilowii]

8.2e-73

95.89

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Query:  MSCREGLMSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE
        MSCREGLMSPQTETKASVGFKAGVKD KLTYYT EYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE
Subjt:  MSCREGLMSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE

Query:  ENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK
        ENQYIAYVAYPLDLFEEGSVTNM TSIVGNVFGFKALRALRLE ++
Subjt:  ENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK

QJD26479.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Trichosanthes kirilowii var. japonica]

8.2e-73

95.89

Show/hide

Query:  MSCREGLMSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE
        MSCREGLMSPQTETKASVGFKAGVKD KLTYYT EYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE
Subjt:  MSCREGLMSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE

Query:  ENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK
        ENQYIAYVAYPLDLFEEGSVTNM TSIVGNVFGFKALRALRLE ++
Subjt:  ENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK

QJD26653.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Trichosanthes rosthornii]

8.2e-73

95.89

Show/hide

Query:  MSCREGLMSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE
        MSCREGLMSPQTETKASVGFKAGVKD KLTYYT EYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE
Subjt:  MSCREGLMSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE

Query:  ENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK
        ENQYIAYVAYPLDLFEEGSVTNM TSIVGNVFGFKALRALRLE ++
Subjt:  ENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK

YP_009525194.1 ribulose bisophosphate carboxylase [Hodgsonia macrocarpa]

8.2e-73

95.89

Show/hide

Query:  MSCREGLMSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE
        MSCREGLMSPQTETKASVGFKAGVKD KLTYYT EYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE
Subjt:  MSCREGLMSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE

Query:  ENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK
        ENQYIAYVAYPLDLFEEGSVTNM TSIVGNVFGFKALRALRLE ++
Subjt:  ENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK

TrEMBL top hits

e value

%identity

Alignment

A0A346QN70 Ribulose bisphosphate carboxylase large chain

4.0e-73

95.89

Show/hide

Query:  MSCREGLMSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE
        MSCREGLMSPQTETKASVGFKAGVKD KLTYYT EYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE
Subjt:  MSCREGLMSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE

Query:  ENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK
        ENQYIAYVAYPLDLFEEGSVTNM TSIVGNVFGFKALRALRLE ++
Subjt:  ENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK

A0A6M3RTS6 Ribulose bisphosphate carboxylase large chain

4.0e-73

95.89

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Query:  MSCREGLMSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE
        MSCREGLMSPQTETKASVGFKAGVKD KLTYYT EYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE
Subjt:  MSCREGLMSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE

Query:  ENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK
        ENQYIAYVAYPLDLFEEGSVTNM TSIVGNVFGFKALRALRLE ++
Subjt:  ENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK

A0A6M3RU72 Ribulose bisphosphate carboxylase large chain

4.0e-73

95.89

Show/hide

Query:  MSCREGLMSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE
        MSCREGLMSPQTETKASVGFKAGVKD KLTYYT EYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE
Subjt:  MSCREGLMSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE

Query:  ENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK
        ENQYIAYVAYPLDLFEEGSVTNM TSIVGNVFGFKALRALRLE ++
Subjt:  ENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK

A0A6M3S661 Ribulose bisphosphate carboxylase large chain

4.0e-73

95.89

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Query:  MSCREGLMSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE
        MSCREGLMSPQTETKASVGFKAGVKD KLTYYT EYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE
Subjt:  MSCREGLMSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE

Query:  ENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK
        ENQYIAYVAYPLDLFEEGSVTNM TSIVGNVFGFKALRALRLE ++
Subjt:  ENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK

A0A7D4XNS8 Ribulose bisphosphate carboxylase large chain

8.9e-73

95.21

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Query:  MSCREGLMSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE
        MSCREGLMSPQTETKASVGFKAGVKD KLTYYT EY+TKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE
Subjt:  MSCREGLMSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGE

Query:  ENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK
        ENQYIAYVAYPLDLFEEGSVTNM TSIVGNVFGFKALRALRLE ++
Subjt:  ENQYIAYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK

SwissProt top hits

e value

%identity

Alignment

O62943 Ribulose bisphosphate carboxylase large chain

6.1e-71

94.96

Show/hide

Query:  MSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQYIAY
        MSPQTETKASVGFKAGVKD KLTYYT +YETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQYIAY
Subjt:  MSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQYIAY

Query:  VAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK
        VAYPLDLFEEGSVTNM TSIVGNVFGFKALRALRLE ++
Subjt:  VAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK

P27064 Ribulose bisphosphate carboxylase large chain

2.7e-71

95.68

Show/hide

Query:  MSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQYIAY
        MSPQTETKASVGFKAGVKD KLTYYT EYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQYIAY
Subjt:  MSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQYIAY

Query:  VAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK
        VAYPLDLFEEGSVTNM TSIVGNVFGFKALRALRLE ++
Subjt:  VAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK

P31202 Ribulose bisphosphate carboxylase large chain (Fragment)

1.0e-70

94.24

Show/hide

Query:  MSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQYIAY
        MSPQTETKASVGFKAGVKD KLTYYT +YETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYG+EPVAGEENQYIAY
Subjt:  MSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQYIAY

Query:  VAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK
        VAYPLDLFEEGSVTNM TSIVGNVFGFKALRALRLE ++
Subjt:  VAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK

P48693 Ribulose bisphosphate carboxylase large chain

1.0e-70

94.96

Show/hide

Query:  MSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQYIAY
        MSPQTETKASVGFKAGVKD KLTYYT EYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPV GEENQYIAY
Subjt:  MSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQYIAY

Query:  VAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK
        VAYPLDLFEEGSVTNM TSIVGNVFGFKALRALRLE ++
Subjt:  VAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK

P48706 Ribulose bisphosphate carboxylase large chain

1.0e-70

94.96

Show/hide

Query:  MSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQYIAY
        MSPQTETKASVGFKAGVKD KLTYYT EYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPV GEENQYIAY
Subjt:  MSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQYIAY

Query:  VAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK
        VAYPLDLFEEGSVTNM TSIVGNVFGFKALRALRLE ++
Subjt:  VAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK

Arabidopsis top hits

e value

%identity

Alignment

ATCG00490.1 ribulose-bisphosphate carboxylases

1.3e-68

91.37

Show/hide

Query:  MSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQYIAY
        MSPQTETKASVGFKAGVK+ KLTYYT EYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEE Q+IAY
Subjt:  MSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQYIAY

Query:  VAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK
        VAYPLDLFEEGSVTNM TSIVGNVFGFKAL ALRLE ++
Subjt:  VAYPLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGTTGTAGGGAGGGACTTATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTCAAAATTGACTTATTATACTGCTGAATATGA
AACCAAAGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCGGGAGTTCCACCCGAGGAAGCAGGGGCCGCTGTAGCTGCTGAATCTTCTACTGGTACATGGA
CAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGCATCGAGCCTGTTGCTGGAGAAGAAAATCAATATATTGCTTATGTAGCTTAT
CCCCTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTGACTTCCATTGTGGGTAATGTATTTGGATTCAAGGCTCTACGCGCTCTACGTCTGGAACAGGTGAAATC
AAAGGACATTACTTGA

mRNA sequence

Show/hide mRNA sequence

TAACGAACCATTCTGATTAGTTGATAATATTAGTTGAGAATTTTGTGAAAGGATTCCTATAAAAGGTTTCATTAACTCCTAATTCATGTCGAGTAGACCTTGTTGTTGCG
AGAATTCTTAATTCATGAGTTGTAGGGAGGGACTTATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTCAAAATTGACTTATTAT
ACTGCTGAATATGAAACCAAAGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCGGGAGTTCCACCCGAGGAAGCAGGGGCCGCTGTAGCTGCTGAATCTTC
TACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGCATCGAGCCTGTTGCTGGAGAAGAAAATCAATATATTG
CTTATGTAGCTTATCCCCTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTGACTTCCATTGTGGGTAATGTATTTGGATTCAAGGCTCTACGCGCTCTACGTCTG
GAACAGGTGAAATCAAAGGACATTACTTGA

Protein sequence

Show/hide protein sequence

MSCREGLMSPQTETKASVGFKAGVKDSKLTYYTAEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQYIAYVAY
PLDLFEEGSVTNMLTSIVGNVFGFKALRALRLEQVKSKDIT

Tan0017476 (gene) of Snake gourd v1 genome