CuGenDBv2

Gene ID	Tan0017508
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG05:31597869..31599570
RNA-Seq Expression	Tan0017508
Synteny	Tan0017508
Gene Ontology terms	GO:0005488 - binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

3.3e-51

68.29

Show/hide

Query:  KENRVFVSTNATFLEEDHVRDHYPSSKIVLNEMDSTSTRVVDGASTSTNVVDPSTSSQVR-SQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPL
        +ENRVFVSTNATFLEEDH+R+H P SK+VL+E    STRVVD    S+ V + +TS Q   SQ L MPRRS + V QP RY+ L ETQVV PDD  EDPL
Subjt:  KENRVFVSTNATFLEEDHVRDHYPSSKIVLNEMDSTSTRVVDGASTSTNVVDPSTSSQVR-SQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPL

Query:  TYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA
        +Y QAM DVDKD+W+KAMD EMESMYFN VWELVD  +GVKPIGCKWIYKRKR    KVQTFKA
Subjt:  TYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-51

68.9

Show/hide

Query:  KENRVFVSTNATFLEEDHVRDHYPSSKIVLNEMDSTSTRVVDGASTSTNVVDPSTSSQVR-SQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPL
        KENRVFVSTNATFLEEDH+R+H P SK+VL+E    STRVVD    S+ V + +TS Q   SQ L MPRRS + V QP RY+ L ETQVV PDD  EDPL
Subjt:  KENRVFVSTNATFLEEDHVRDHYPSSKIVLNEMDSTSTRVVDGASTSTNVVDPSTSSQVR-SQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPL

Query:  TYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA
        +Y QAM DVDKD+W+KAMD EMESMYFN VWELVD  +GVKPIGCKWIYKRKR    KVQTFKA
Subjt:  TYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]

3.3e-51

68.29

Show/hide

Query:  KENRVFVSTNATFLEEDHVRDHYPSSKIVLNEMDSTSTRVVDGASTSTNVVDPSTSSQVR-SQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPL
        +ENRVFVSTNATFLEEDH+R+H P SK+VL+E    STRVVD    S+ V + +TS Q   SQ L MPRRS + V QP RY+ L ETQVV PDD  EDPL
Subjt:  KENRVFVSTNATFLEEDHVRDHYPSSKIVLNEMDSTSTRVVDGASTSTNVVDPSTSSQVR-SQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPL

Query:  TYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA
        +Y QAM DVDKD+W+KAMD EMESMYFN VWELVD  +GVKPIGCKWIYKRKR    KVQTFKA
Subjt:  TYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA

TYK02840.1 gag/pol protein [Cucumis melo var. makuwa]

3.3e-51

68.29

Show/hide

Query:  KENRVFVSTNATFLEEDHVRDHYPSSKIVLNEMDSTSTRVVDGASTSTNVVDPSTSSQVR-SQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPL
        +ENRVFVSTNATFLEEDH+R+H P SK+VL+E    STRVVD    S+ V + +TS Q   SQ L MPRRS + V QP RY+ L ETQVV PDD  EDPL
Subjt:  KENRVFVSTNATFLEEDHVRDHYPSSKIVLNEMDSTSTRVVDGASTSTNVVDPSTSSQVR-SQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPL

Query:  TYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA
        +Y QAM DVDKD+W+KAMD EMESMYFN VWELVD  +GVKPIGCKWIYKRKR    KVQTFKA
Subjt:  TYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA

TYK15984.1 gag/pol protein [Cucumis melo var. makuwa]

3.3e-51

68.29

Show/hide

Query:  KENRVFVSTNATFLEEDHVRDHYPSSKIVLNEMDSTSTRVVDGASTSTNVVDPSTSSQVR-SQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPL
        +ENRVFVSTNATFLEEDH+R+H P SK+VL+E    STRVVD    S+ V + +TS Q   SQ L MPRRS + V QP RY+ L ETQVV PDD  EDPL
Subjt:  KENRVFVSTNATFLEEDHVRDHYPSSKIVLNEMDSTSTRVVDGASTSTNVVDPSTSSQVR-SQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPL

Query:  TYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA
        +Y QAM DVDKD+W+KAMD EMESMYFN VWELVD  +GVKPIGCKWIYKRKR    KVQTFKA
Subjt:  TYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T2V9 Gag/pol protein

5.4e-52

68.9

Show/hide

Query:  KENRVFVSTNATFLEEDHVRDHYPSSKIVLNEMDSTSTRVVDGASTSTNVVDPSTSSQVR-SQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPL
        KENRVFVSTNATFLEEDH+R+H P SK+VL+E    STRVVD    S+ V + +TS Q   SQ L MPRRS + V QP RY+ L ETQVV PDD  EDPL
Subjt:  KENRVFVSTNATFLEEDHVRDHYPSSKIVLNEMDSTSTRVVDGASTSTNVVDPSTSSQVR-SQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPL

Query:  TYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA
        +Y QAM DVDKD+W+KAMD EMESMYFN VWELVD  +GVKPIGCKWIYKRKR    KVQTFKA
Subjt:  TYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA

A0A5A7TZD0 Gag/pol protein

1.6e-51

68.29

Show/hide

Query:  KENRVFVSTNATFLEEDHVRDHYPSSKIVLNEMDSTSTRVVDGASTSTNVVDPSTSSQVR-SQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPL
        +ENRVFVSTNATFLEEDH+R+H P SK+VL+E    STRVVD    S+ V + +TS Q   SQ L MPRRS + V QP RY+ L ETQVV PDD  EDPL
Subjt:  KENRVFVSTNATFLEEDHVRDHYPSSKIVLNEMDSTSTRVVDGASTSTNVVDPSTSSQVR-SQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPL

Query:  TYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA
        +Y QAM DVDKD+W+KAMD EMESMYFN VWELVD  +GVKPIGCKWIYKRKR    KVQTFKA
Subjt:  TYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA

A0A5A7UYE8 Gag/pol protein

1.6e-51

68.29

Show/hide

Query:  KENRVFVSTNATFLEEDHVRDHYPSSKIVLNEMDSTSTRVVDGASTSTNVVDPSTSSQVR-SQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPL
        +ENRVFVSTNATFLEEDH+R+H P SK+VL+E    STRVVD    S+ V + +TS Q   SQ L MPRRS + V QP RY+ L ETQVV PDD  EDPL
Subjt:  KENRVFVSTNATFLEEDHVRDHYPSSKIVLNEMDSTSTRVVDGASTSTNVVDPSTSSQVR-SQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPL

Query:  TYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA
        +Y QAM DVDKD+W+KAMD EMESMYFN VWELVD  +GVKPIGCKWIYKRKR    KVQTFKA
Subjt:  TYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA

A0A5D3BUN8 Gag/pol protein

1.6e-51

68.29

Show/hide

Query:  KENRVFVSTNATFLEEDHVRDHYPSSKIVLNEMDSTSTRVVDGASTSTNVVDPSTSSQVR-SQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPL
        +ENRVFVSTNATFLEEDH+R+H P SK+VL+E    STRVVD    S+ V + +TS Q   SQ L MPRRS + V QP RY+ L ETQVV PDD  EDPL
Subjt:  KENRVFVSTNATFLEEDHVRDHYPSSKIVLNEMDSTSTRVVDGASTSTNVVDPSTSSQVR-SQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPL

Query:  TYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA
        +Y QAM DVDKD+W+KAMD EMESMYFN VWELVD  +GVKPIGCKWIYKRKR    KVQTFKA
Subjt:  TYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA

A0A5D3CYF4 Gag/pol protein

1.6e-51

68.29

Show/hide

Query:  KENRVFVSTNATFLEEDHVRDHYPSSKIVLNEMDSTSTRVVDGASTSTNVVDPSTSSQVR-SQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPL
        +ENRVFVSTNATFLEEDH+R+H P SK+VL+E    STRVVD    S+ V + +TS Q   SQ L MPRRS + V QP RY+ L ETQVV PDD  EDPL
Subjt:  KENRVFVSTNATFLEEDHVRDHYPSSKIVLNEMDSTSTRVVDGASTSTNVVDPSTSSQVR-SQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPL

Query:  TYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA
        +Y QAM DVDKD+W+KAMD EMESMYFN VWELVD  +GVKPIGCKWIYKRKR    KVQTFKA
Subjt:  TYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.5e-06

31.86

Show/hide

Query:  VDPSTSSQVRSQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPLTYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKR
        V+  T  + + Q L   RRS +   +  RY     T+ V   DD  +P +  + ++  +K++ +KAM +EMES+  N  ++LV+   G +P+ CKW++K 
Subjt:  VDPSTSSQVRSQELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPLTYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKR

Query:  KRGVDRKVQTFKA
        K+  D K+  +KA
Subjt:  KRGVDRKVQTFKA

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

9.0e-07

36.76

Show/hide

Query:  EDPLTYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA
        ++P TY++A   +    W  AMD E+ +M     WE+       KPIGCKW+YK K   D  ++ +KA
Subjt:  EDPLTYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGGACGGCCACTGGAAGCAAAACTGTCCCAAGTTCCTTGCCGAAAAGAAGAATACAGGGAATTAGTTCCTGGCAGCAGATGCGAGAGGGTGAGGTGACTCTACGGGT
TGGATCCGAGGAGATTGTTTCTGCTGCAGCAATCGGTAAAGAAAATAGGGTGTTTGTGTCGACAAACGCCACTTTCCTTGAGGAAGACCACGTCAGGGATCATTATCCTA
GCAGCAAAATCGTGTTAAACGAAATGGACAGTACATCAACAAGAGTTGTTGATGGGGCTAGTACGTCAACAAATGTTGTTGATCCTAGCACGTCTAGTCAAGTGCGTTCT
CAAGAGTTGGGAATGCCTCGACGTAGTCGGAAGGCTGTGAGGCAGCCTGAACGTTACATACGTTTAGCTGAAACCCAAGTCGTCACCCCTGATGATGACTGCGAGGATCC
ATTGACCTATGATCAGGCAATGGCAGACGTTGACAAGGACGAATGGATTAAAGCTATGGACCAGGAAATGGAGTCGATGTACTTCAATTTCGTCTGGGAGCTTGTGGATC
AACTTGATGGGGTAAAACCTATAGGTTGCAAATGGATCTACAAGCGTAAACGTGGCGTAGATAGGAAGGTGCAGACCTTCAAAGCATGA

mRNA sequence

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Protein sequence

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MGTATGSKTVPSSLPKRRIQGISSWQQMREGEVTLRVGSEEIVSAAAIGKENRVFVSTNATFLEEDHVRDHYPSSKIVLNEMDSTSTRVVDGASTSTNVVDPSTSSQVRS
QELGMPRRSRKAVRQPERYIRLAETQVVTPDDDCEDPLTYDQAMADVDKDEWIKAMDQEMESMYFNFVWELVDQLDGVKPIGCKWIYKRKRGVDRKVQTFKA

Tan0017508 (gene) of Snake gourd v1 genome