CuGenDBv2

Gene ID	Tan0017527
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG01:60040604..60041011
RNA-Seq Expression	Tan0017527
Synteny	Tan0017527
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

1.0e-37

67.91

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Query:  MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKG
        MFG+   QI+H+ LKY+YNA M EG SVREHVL++MV F +AE+NGAVIDE SQVSFILESL +SFLQFRSNAV N I YT+TTLLNELQT++SLMK KG
Subjt:  MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKG

Query:  PVEREANVFAHSKKFHKGSSSGTKCVASSSCLKK
          + EANV   ++KFH+GS+SGTK + SSS  KK
Subjt:  PVEREANVFAHSKKFHKGSSSGTKCVASSSCLKK

KAA0045330.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]

7.7e-38

67.16

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Query:  MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKG
        MFG+   QI+H+ LKY+YNAHM EG SV+EHVL++MV F MAE+NGAVIDE S+VSFIL+SL +SFLQFRSNAV N I YT+TTLLNELQT++SLMK KG
Subjt:  MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKG

Query:  PVEREANVFAHSKKFHKGSSSGTKCVASSSCLKK
          + EANV   ++KFH+GS+SGTK + SSS  KK
Subjt:  PVEREANVFAHSKKFHKGSSSGTKCVASSSCLKK

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

1.0e-37

67.91

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Query:  MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKG
        MFG+   QI+H+ LKY+YNA M EG SVREHVL++MV F +AE+NGAVIDE SQVSFILESL +SFLQFRSNAV N I YT+TTLLNELQT++SLMK KG
Subjt:  MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKG

Query:  PVEREANVFAHSKKFHKGSSSGTKCVASSSCLKK
          + EANV   ++KFH+GS+SGTK + SSS  KK
Subjt:  PVEREANVFAHSKKFHKGSSSGTKCVASSSCLKK

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

5.9e-38

67.91

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Query:  MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKG
        MFG+   QI+H+ LKY+YNA M EG SVREHVL++MV F +AE+NGAVIDE SQVSFILESL +SFLQFRSNAV N I YT+TTLLNELQT++SLMK KG
Subjt:  MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKG

Query:  PVEREANVFAHSKKFHKGSSSGTKCVASSSCLKK
          + EANV   ++KFH+GS+SGTK + SSS  KK
Subjt:  PVEREANVFAHSKKFHKGSSSGTKCVASSSCLKK

KAA0066490.1 gag/pol protein [Cucumis melo var. makuwa]

4.5e-38

68.66

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Query:  MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKG
        MFG+   QI+H+ LKY+YNA M EG SVREHVL++MV F MAE+NGAVIDE SQVSFILESL +SFLQFRSNAV N I YT+TTLLNELQT++SLMK KG
Subjt:  MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKG

Query:  PVEREANVFAHSKKFHKGSSSGTKCVASSSCLKK
          + EANV   ++KFH+GS+SGTK + SSS  KK
Subjt:  PVEREANVFAHSKKFHKGSSSGTKCVASSSCLKK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

4.9e-38

67.91

Show/hide

Query:  MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKG
        MFG+   QI+H+ LKY+YNA M EG SVREHVL++MV F +AE+NGAVIDE SQVSFILESL +SFLQFRSNAV N I YT+TTLLNELQT++SLMK KG
Subjt:  MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKG

Query:  PVEREANVFAHSKKFHKGSSSGTKCVASSSCLKK
          + EANV   ++KFH+GS+SGTK + SSS  KK
Subjt:  PVEREANVFAHSKKFHKGSSSGTKCVASSSCLKK

A0A5A7TQ86 Retrotransposon protein, putative, Ty1-copia subclass

3.7e-38

67.16

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Query:  MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKG
        MFG+   QI+H+ LKY+YNAHM EG SV+EHVL++MV F MAE+NGAVIDE S+VSFIL+SL +SFLQFRSNAV N I YT+TTLLNELQT++SLMK KG
Subjt:  MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKG

Query:  PVEREANVFAHSKKFHKGSSSGTKCVASSSCLKK
          + EANV   ++KFH+GS+SGTK + SSS  KK
Subjt:  PVEREANVFAHSKKFHKGSSSGTKCVASSSCLKK

A0A5A7V6N0 Gag/pol protein

2.8e-38

67.91

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Query:  MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKG
        MFG+   QI+H+ LKY+YNA M EG SVREHVL++MV F +AE+NGAVIDE SQVSFILESL +SFLQFRSNAV N I YT+TTLLNELQT++SLMK KG
Subjt:  MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKG

Query:  PVEREANVFAHSKKFHKGSSSGTKCVASSSCLKK
          + EANV   ++KFH+GS+SGTK + SSS  KK
Subjt:  PVEREANVFAHSKKFHKGSSSGTKCVASSSCLKK

A0A5A7VH46 Gag/pol protein

2.2e-38

68.66

Show/hide

Query:  MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKG
        MFG+   QI+H+ LKY+YNA M EG SVREHVL++MV F MAE+NGAVIDE SQVSFILESL +SFLQFRSNAV N I YT+TTLLNELQT++SLMK KG
Subjt:  MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKG

Query:  PVEREANVFAHSKKFHKGSSSGTKCVASSSCLKK
          + EANV   ++KFH+GS+SGTK + SSS  KK
Subjt:  PVEREANVFAHSKKFHKGSSSGTKCVASSSCLKK

A0A5D3CPJ6 Gag/pol protein

4.9e-38

67.91

Show/hide

Query:  MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKG
        MFG+   QI+H+ LKY+YNA M EG SVREHVL++MV F +AE+NGAVIDE SQVSFILESL +SFLQFRSNAV N I YT+TTLLNELQT++SLMK KG
Subjt:  MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKG

Query:  PVEREANVFAHSKKFHKGSSSGTKCVASSSCLKK
          + EANV   ++KFH+GS+SGTK + SSS  KK
Subjt:  PVEREANVFAHSKKFHKGSSSGTKCVASSSCLKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTTGGGAAATTTCCCACACAGATCCGACATGAGACCCTCAAATACGTTTACAATGCACACATGAAAGAGGGATTGTCAGTGAGGGAACACGTTCTCGATGTGATGGT
CCAATTCAAAATGGCAGAGATAAATGGGGCAGTCATTGACGAGCAAAGTCAGGTGTCATTCATTTTAGAATCTCTTCGGAAGAGTTTTTTACAATTCCGTAGTAATGCGG
TAACGAATAGTATTCAGTACACCATGACTACCCTTCTTAATGAACTACAAACATACCAATCTCTAATGAAAAATAAGGGACCAGTTGAAAGAGAGGCGAATGTGTTTGCC
CATTCAAAAAAGTTCCATAAGGGTTCATCCTCTGGAACTAAGTGTGTAGCTTCCTCTTCTTGTCTTAAGAAGATATAG

mRNA sequence

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Protein sequence

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MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKGPVEREANVFA
HSKKFHKGSSSGTKCVASSSCLKKI

Tan0017527 (gene) of Snake gourd v1 genome