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Tan0017555 (gene) of Snake gourd v1 genome

Gene IDTan0017555
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG06:60728655..60732917
RNA-Seq ExpressionTan0017555
SyntenyTan0017555
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025165.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.4e-3074.71Show/hide
Query:  FENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK
        FE SK+  E EF++R+DEAI +QGRLCVP++SELK+AILEEAHSSA+AMHPG+TKMY+TLK TYWW GMK+EI EYVDRCLICQ+ K
Subjt:  FENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK

KAA0041132.1 hypothetical protein E6C27_scaffold128G00450 [Cucumis melo var. makuwa]1.4e-2974.71Show/hide
Query:  FENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK
        FE SK+  E EF++R+D AI +QGRLCVP++SELK+AILEEAHSSA+AMHPG+TKMY+TLK TYWW GMK+EIVEYVDRCLICQ+ K
Subjt:  FENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK

KAA0054081.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.2e-2973.56Show/hide
Query:  FENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK
        FE SK+  E EF++R+D AI +QGRLCVP++SELK+AILEEAHSSA+AMHPG+TKMY+TLK TYWW GMK+EI EYVDRCLICQ+ K
Subjt:  FENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-2973.86Show/hide
Query:  MFENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK
        M   +KQ PEAEF++R D AI +QGRLCVP++SELK AILEEAH+SA+AMHPG+TKMY+TLK TYWW GMKREI EYVDRCLICQ+ K
Subjt:  MFENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-1046.6Show/hide
Query:  LSTLSVLRDNNAIVEIELPVPDILP---------------------------YVP----YANIVCYQVKQGQQVLLRGNNICWLHVVFRAKSAGGSGGGV
        LSTLSVLRDNNA+VEIELPVPD LP                           Y P     A+ VC+   +G   ++RG+++CWLH VFRAK+AGG  GGV
Subjt:  LSTLSVLRDNNAIVEIELPVPDILP---------------------------YVP----YANIVCYQVKQGQQVLLRGNNICWLHVVFRAKSAGGSGGGV

Query:  TTS
        T S
Subjt:  TTS

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-2973.86Show/hide
Query:  MFENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK
        M   +KQ PEAEF++R D AI +QGRLCVP++SELK AILEEAH+SA+AMHPG+TKMY+TLK TYWW GMKREI EYVDRCLICQ+ K
Subjt:  MFENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK

TrEMBL top hitse value%identityAlignment
A0A5A7SL18 DNA/RNA polymerases superfamily protein3.1e-3074.71Show/hide
Query:  FENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK
        FE SK+  E EF++R+DEAI +QGRLCVP++SELK+AILEEAHSSA+AMHPG+TKMY+TLK TYWW GMK+EI EYVDRCLICQ+ K
Subjt:  FENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK

A0A5A7U2V7 Reverse transcriptase2.0e-2973.56Show/hide
Query:  FENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK
        FE SK+  E EF++R+D AI +QGRLCVP++SELK+AILEEAHSSA+AMHPG+TKMY+TLK TYWW GMK+EI EYVDRCLICQ+ K
Subjt:  FENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK

A0A5A7UJV1 DNA/RNA polymerases superfamily protein5.3e-3073.86Show/hide
Query:  MFENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK
        M   +KQ PEAEF++R D AI +QGRLCVP++SELK AILEEAH+SA+AMHPG+TKMY+TLK TYWW GMKREI EYVDRCLICQ+ K
Subjt:  MFENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK

A0A5D3CCC7 DNA/RNA polymerases superfamily protein5.3e-3073.86Show/hide
Query:  MFENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK
        M   +KQ PEAEF++R D AI +QGRLCVP++SELK AILEEAH+SA+AMHPG+TKMY+TLK TYWW GMKREI EYVDRCLICQ+ K
Subjt:  MFENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK

A0A5D3CCC7 DNA/RNA polymerases superfamily protein5.5e-1146.6Show/hide
Query:  LSTLSVLRDNNAIVEIELPVPDILP---------------------------YVP----YANIVCYQVKQGQQVLLRGNNICWLHVVFRAKSAGGSGGGV
        LSTLSVLRDNNA+VEIELPVPD LP                           Y P     A+ VC+   +G   ++RG+++CWLH VFRAK+AGG  GGV
Subjt:  LSTLSVLRDNNAIVEIELPVPDILP---------------------------YVP----YANIVCYQVKQGQQVLLRGNNICWLHVVFRAKSAGGSGGGV

Query:  TTS
        T S
Subjt:  TTS

A0A5D3CCC7 DNA/RNA polymerases superfamily protein6.9e-3074.71Show/hide
Query:  FENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK
        FE SK+  E EF++R+D AI +QGRLCVP++SELK+AILEEAHSSA+AMHPG+TKMY+TLK TYWW GMK+EIVEYVDRCLICQ+ K
Subjt:  FENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein4.8e-0422.73Show/hide
Query:  MFENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK
        +  N  +  E   +++    I  + ++ +P+ ++L   I+++ H     +HPG   +   +   + W G++++I EYV  C  CQ  K
Subjt:  MFENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK

P0CT35 Transposon Tf2-2 polyprotein4.8e-0422.73Show/hide
Query:  MFENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK
        +  N  +  E   +++    I  + ++ +P+ ++L   I+++ H     +HPG   +   +   + W G++++I EYV  C  CQ  K
Subjt:  MFENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK

P0CT36 Transposon Tf2-3 polyprotein4.8e-0422.73Show/hide
Query:  MFENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK
        +  N  +  E   +++    I  + ++ +P+ ++L   I+++ H     +HPG   +   +   + W G++++I EYV  C  CQ  K
Subjt:  MFENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK

P0CT41 Transposon Tf2-12 polyprotein4.8e-0422.73Show/hide
Query:  MFENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK
        +  N  +  E   +++    I  + ++ +P+ ++L   I+++ H     +HPG   +   +   + W G++++I EYV  C  CQ  K
Subjt:  MFENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK

Q9UR07 Transposon Tf2-11 polyprotein4.8e-0422.73Show/hide
Query:  MFENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK
        +  N  +  E   +++    I  + ++ +P+ ++L   I+++ H     +HPG   +   +   + W G++++I EYV  C  CQ  K
Subjt:  MFENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGAAAATTCCAAACAGAGCCCAGAAGCAGAATTTAAAATGAGATCAGATGAAGCCATAGAGAGACAGGGAAGATTATGTGTTCCGAGTGTTAGTGAGCTTAAAGA
TGCAATTCTAGAGGAAGCTCACAGTTCAGCTCACGCTATGCATCCAGGAACCACCAAAATGTACAAAACTTTGAAGGGGACGTATTGGTGGCTTGGGATGAAGCGAGAGA
TAGTTGAATATGTTGATAGATGTTTGATCTGCCAAAGACAAAAATTTGCTGTCAAATCCGAGAAGTCTCTGGTTTTTGGATTGTCCTGGTCTGTAGCGTTCGAATCAGAA
GCTCTATTAGGTCATATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAATGCTATCGTAGAGATCGAGCTCCCGGTACCTGATATCCTGCCATATGTTCCATATGC
GAACATAGTATGTTATCAGGTTAAACAGGGTCAACAGGTATTGTTAAGAGGTAACAATATCTGTTGGCTTCATGTCGTCTTCCGGGCTAAGTCAGCAGGTGGTTCGGGAG
GGGGTGTGACAACATCATTTATATTATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGAAAATTCCAAACAGAGCCCAGAAGCAGAATTTAAAATGAGATCAGATGAAGCCATAGAGAGACAGGGAAGATTATGTGTTCCGAGTGTTAGTGAGCTTAAAGA
TGCAATTCTAGAGGAAGCTCACAGTTCAGCTCACGCTATGCATCCAGGAACCACCAAAATGTACAAAACTTTGAAGGGGACGTATTGGTGGCTTGGGATGAAGCGAGAGA
TAGTTGAATATGTTGATAGATGTTTGATCTGCCAAAGACAAAAATTTGCTGTCAAATCCGAGAAGTCTCTGGTTTTTGGATTGTCCTGGTCTGTAGCGTTCGAATCAGAA
GCTCTATTAGGTCATATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAATGCTATCGTAGAGATCGAGCTCCCGGTACCTGATATCCTGCCATATGTTCCATATGC
GAACATAGTATGTTATCAGGTTAAACAGGGTCAACAGGTATTGTTAAGAGGTAACAATATCTGTTGGCTTCATGTCGTCTTCCGGGCTAAGTCAGCAGGTGGTTCGGGAG
GGGGTGTGACAACATCATTTATATTATAA
Protein sequenceShow/hide protein sequence
MFENSKQSPEAEFKMRSDEAIERQGRLCVPSVSELKDAILEEAHSSAHAMHPGTTKMYKTLKGTYWWLGMKREIVEYVDRCLICQRQKFAVKSEKSLVFGLSWSVAFESE
ALLGHILLSTLSVLRDNNAIVEIELPVPDILPYVPYANIVCYQVKQGQQVLLRGNNICWLHVVFRAKSAGGSGGGVTTSFIL