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Tan0017579 (gene) of Snake gourd v1 genome

Gene IDTan0017579
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationLG09:45837297..45875198
RNA-Seq ExpressionTan0017579
SyntenyTan0017579
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025406.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-1765Show/hide
Query:  MSIDVNQTIDPLYVPEGVITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENRVKMAREKLSSLKDGT
        M  DV+   + L++PEG IT+ KAKKIQEAFTLH+QKL NAQ ET+ FEPK LYNVS+ SQ+E+ VKM REKL SL+D T
Subjt:  MSIDVNQTIDPLYVPEGVITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENRVKMAREKLSSLKDGT

KAA0059666.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.2e-1765.85Show/hide
Query:  DVNQTIDPLYVPEGVITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENRVKMAREKLSSLKDGTEYKKN
        DV+   + L+VPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE K LYNVS+ SQ+E+ VKMAREKL +L+DGT  +K+
Subjt:  DVNQTIDPLYVPEGVITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENRVKMAREKLSSLKDGTEYKKN

KAA0065364.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.9e-1867.07Show/hide
Query:  DVNQTIDPLYVPEGVITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENRVKMAREKLSSLKDGTEYKKN
        DV+   + L+VPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE K LYNVS+ SQ+E+RVKMAREKL +L+DGT  +K+
Subjt:  DVNQTIDPLYVPEGVITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENRVKMAREKLSSLKDGTEYKKN

TYK09768.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.2e-1765Show/hide
Query:  MSIDVNQTIDPLYVPEGVITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENRVKMAREKLSSLKDGT
        M  DV+   + L++PEG IT+ KAKKIQEAFTLH+QKL NAQ ET+ FEPK LYNVS+ SQ+E+ VKM REKL SL+D T
Subjt:  MSIDVNQTIDPLYVPEGVITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENRVKMAREKLSSLKDGT

TYK20861.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.9e-1867.07Show/hide
Query:  DVNQTIDPLYVPEGVITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENRVKMAREKLSSLKDGTEYKKN
        DV+   + L+VPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE K LYNVS+ SQ+E+RVKMAREKL +L+DGT  +K+
Subjt:  DVNQTIDPLYVPEGVITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENRVKMAREKLSSLKDGTEYKKN

TrEMBL top hitse value%identityAlignment
A0A5A7SHU3 Reverse transcriptase5.9e-1865Show/hide
Query:  MSIDVNQTIDPLYVPEGVITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENRVKMAREKLSSLKDGT
        M  DV+   + L++PEG IT+ KAKKIQEAFTLH+QKL NAQ ET+ FEPK LYNVS+ SQ+E+ VKM REKL SL+D T
Subjt:  MSIDVNQTIDPLYVPEGVITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENRVKMAREKLSSLKDGT

A0A5A7UZP1 Transposon Ty3-I Gag-Pol polyprotein5.9e-1865.85Show/hide
Query:  DVNQTIDPLYVPEGVITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENRVKMAREKLSSLKDGTEYKKN
        DV+   + L+VPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE K LYNVS+ SQ+E+ VKMAREKL +L+DGT  +K+
Subjt:  DVNQTIDPLYVPEGVITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENRVKMAREKLSSLKDGTEYKKN

A0A5A7VDK8 Transposon Ty3-I Gag-Pol polyprotein9.1e-1967.07Show/hide
Query:  DVNQTIDPLYVPEGVITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENRVKMAREKLSSLKDGTEYKKN
        DV+   + L+VPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE K LYNVS+ SQ+E+RVKMAREKL +L+DGT  +K+
Subjt:  DVNQTIDPLYVPEGVITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENRVKMAREKLSSLKDGTEYKKN

A0A5D3CEW5 Transposon Ty3-I Gag-Pol polyprotein5.9e-1865Show/hide
Query:  MSIDVNQTIDPLYVPEGVITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENRVKMAREKLSSLKDGT
        M  DV+   + L++PEG IT+ KAKKIQEAFTLH+QKL NAQ ET+ FEPK LYNVS+ SQ+E+ VKM REKL SL+D T
Subjt:  MSIDVNQTIDPLYVPEGVITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENRVKMAREKLSSLKDGT

A0A5D3DB73 Transposon Ty3-I Gag-Pol polyprotein9.1e-1967.07Show/hide
Query:  DVNQTIDPLYVPEGVITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENRVKMAREKLSSLKDGTEYKKN
        DV+   + L+VPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE K LYNVS+ SQ+E+RVKMAREKL +L+DGT  +K+
Subjt:  DVNQTIDPLYVPEGVITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENRVKMAREKLSSLKDGTEYKKN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCATTGATGTGAATCAAACCATTGATCCATTGTATGTACCTGAAGGAGTAATAACAAGGAGCAAGGCCAAGAAGATTCAAGAGGCTTTCACATTGCATCTCCAAAA
GCTCGTGAATGCACAAGGAGAGACCAAGATTTTTGAGCCCAAAATTCTTTATAATGTTAGTACAACAAGTCAAGATGAGAATAGAGTGAAGATGGCACGGGAAAAGTTGT
CTAGTTTGAAAGATGGCACGGAGTACAAAAAAAATAATAAAGAAAAAGTTCCGCAAGTAGTAGATCCAAATATGGCTATTCTTCAAGCAATTCAAGGTATGATGGAGATG
ATGAGGGAAGAAAGGGAAGAAAGGAGAGCACAACAACAAAGAGAAGAACGAATCTTGCAAGAAGATGAAGGCATGTTTGATTTACAGGTACAAGAAAGAAACTTAGGAGG
AAGAGGAAATGATAATTTTGTGAATAGGAATAAACCGACAGAACAAAGAAGCAAGTTTGTTGTTGCCAAAAGAGTGGAGGCCGAAAGCTCCAATGCTAAAAAGAATGAAG
CTTCAAAGGAGGACCACTTGATACATCGGTATTATACGTGCAACGTGTCTCCGGGACTTGAACAAAGGGCCCGACCCTCTCATTGGCTCGAGAGGGACTCTGTTTCTGGT
GTTACGAACACTCGTGAAGGATTGACTTGCTGTTATTGGTCAATATCCGTGGACACAGAAATATATCTGCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCATTGATGTGAATCAAACCATTGATCCATTGTATGTACCTGAAGGAGTAATAACAAGGAGCAAGGCCAAGAAGATTCAAGAGGCTTTCACATTGCATCTCCAAAA
GCTCGTGAATGCACAAGGAGAGACCAAGATTTTTGAGCCCAAAATTCTTTATAATGTTAGTACAACAAGTCAAGATGAGAATAGAGTGAAGATGGCACGGGAAAAGTTGT
CTAGTTTGAAAGATGGCACGGAGTACAAAAAAAATAATAAAGAAAAAGTTCCGCAAGTAGTAGATCCAAATATGGCTATTCTTCAAGCAATTCAAGGTATGATGGAGATG
ATGAGGGAAGAAAGGGAAGAAAGGAGAGCACAACAACAAAGAGAAGAACGAATCTTGCAAGAAGATGAAGGCATGTTTGATTTACAGGTACAAGAAAGAAACTTAGGAGG
AAGAGGAAATGATAATTTTGTGAATAGGAATAAACCGACAGAACAAAGAAGCAAGTTTGTTGTTGCCAAAAGAGTGGAGGCCGAAAGCTCCAATGCTAAAAAGAATGAAG
CTTCAAAGGAGGACCACTTGATACATCGGTATTATACGTGCAACGTGTCTCCGGGACTTGAACAAAGGGCCCGACCCTCTCATTGGCTCGAGAGGGACTCTGTTTCTGGT
GTTACGAACACTCGTGAAGGATTGACTTGCTGTTATTGGTCAATATCCGTGGACACAGAAATATATCTGCAGTGA
Protein sequenceShow/hide protein sequence
MSIDVNQTIDPLYVPEGVITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENRVKMAREKLSSLKDGTEYKKNNKEKVPQVVDPNMAILQAIQGMMEM
MREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNDNFVNRNKPTEQRSKFVVAKRVEAESSNAKKNEASKEDHLIHRYYTCNVSPGLEQRARPSHWLERDSVSG
VTNTREGLTCCYWSISVDTEIYLQ