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Tan0017625 (gene) of Snake gourd v1 genome

Gene IDTan0017625
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG03:12224913..12234640
RNA-Seq ExpressionTan0017625
SyntenyTan0017625
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042466.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-0654.39Show/hide
Query:  PHYIVDIELLVPDILPQSAESSTRDIFQQVLLRGNNVCWLHAAFRAKLAGSSRGGVT
        P ++V IEL VPD LP SAESS  +     ++RG++VCWLHA FRAK  G   G VT
Subjt:  PHYIVDIELLVPDILPQSAESSTRDIFQQVLLRGNNVCWLHAAFRAKLAGSSRGGVT

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]3.2e-0740.4Show/hide
Query:  MGVLGGPHYIVDIELLVPDILPQSAESSTRDIFQQVLLRGNNVCWLHAAFRAKLAGSSRGGVTTSLSNLSQFSHTLLTQNKRETTEKTLWRCLTVRFEE
        + VL     +V+IEL VPD LP SAES   +     ++RG++VCWLHA FRAK AG   GGVT +++  S          ++  T    WR     FEE
Subjt:  MGVLGGPHYIVDIELLVPDILPQSAESSTRDIFQQVLLRGNNVCWLHAAFRAKLAGSSRGGVTTSLSNLSQFSHTLLTQNKRETTEKTLWRCLTVRFEE

TYK00845.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]9.4e-0750Show/hide
Query:  MGVLGGPHYIVDIELLVPDILPQSAESSTRDIFQQVLLRGNNVCWLHAAFRAKLAGSSRGGVTT
        + VL     + +IEL VPD L  SAESS  +     ++RG++VCWLHA FRAK+ G   GGVTT
Subjt:  MGVLGGPHYIVDIELLVPDILPQSAESSTRDIFQQVLLRGNNVCWLHAAFRAKLAGSSRGGVTT

TYK01784.1 hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa]1.6e-0650.79Show/hide
Query:  MGVLGGPHYIVDIELLVPDILPQSAESSTRDIFQQVLLRGNNVCWLHAAFRAKLAGSSRGGVT
        + VL     +V+IELLVPD LP SAESS        ++RG++VCWLH  FRAK  G    GVT
Subjt:  MGVLGGPHYIVDIELLVPDILPQSAESSTRDIFQQVLLRGNNVCWLHAAFRAKLAGSSRGGVT

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.2e-0638.89Show/hide
Query:  GVLGGPHYIV-------------------DIELLVPDILPQSAESSTR---------------------------DIFQQVLLRGNNVCWLHAAFRAKLA
        GV GGPHYIV                   +IELLVPD LP SAESS                             ++    ++R N+VCWLHA FRAK+A
Subjt:  GVLGGPHYIV-------------------DIELLVPDILPQSAESSTR---------------------------DIFQQVLLRGNNVCWLHAAFRAKLA

Query:  GSSRGGVT
        G S GGVT
Subjt:  GSSRGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7TKJ1 Retrotransposon protein7.8e-0754.39Show/hide
Query:  PHYIVDIELLVPDILPQSAESSTRDIFQQVLLRGNNVCWLHAAFRAKLAGSSRGGVT
        P ++V IEL VPD LP SAESS  +     ++RG++VCWLHA FRAK  G   G VT
Subjt:  PHYIVDIELLVPDILPQSAESSTRDIFQQVLLRGNNVCWLHAAFRAKLAGSSRGGVT

A0A5A7UCL6 Reverse transcriptase domain-containing protein7.8e-0750.79Show/hide
Query:  MGVLGGPHYIVDIELLVPDILPQSAESSTRDIFQQVLLRGNNVCWLHAAFRAKLAGSSRGGVT
        + VL     +V+IELLVPD LP SAESS        ++RG++VCWLH  FRAK  G    GVT
Subjt:  MGVLGGPHYIVDIELLVPDILPQSAESSTRDIFQQVLLRGNNVCWLHAAFRAKLAGSSRGGVT

A0A5D3BAD1 Retrotrans_gag domain-containing protein1.6e-0740.4Show/hide
Query:  MGVLGGPHYIVDIELLVPDILPQSAESSTRDIFQQVLLRGNNVCWLHAAFRAKLAGSSRGGVTTSLSNLSQFSHTLLTQNKRETTEKTLWRCLTVRFEE
        + VL     +V+IEL VPD LP SAES   +     ++RG++VCWLHA FRAK AG   GGVT +++  S          ++  T    WR     FEE
Subjt:  MGVLGGPHYIVDIELLVPDILPQSAESSTRDIFQQVLLRGNNVCWLHAAFRAKLAGSSRGGVTTSLSNLSQFSHTLLTQNKRETTEKTLWRCLTVRFEE

A0A5D3BNX1 Zf-CCHC domain-containing protein4.5e-0750Show/hide
Query:  MGVLGGPHYIVDIELLVPDILPQSAESSTRDIFQQVLLRGNNVCWLHAAFRAKLAGSSRGGVTT
        + VL     + +IEL VPD L  SAESS  +     ++RG++VCWLHA FRAK+ G   GGVTT
Subjt:  MGVLGGPHYIVDIELLVPDILPQSAESSTRDIFQQVLLRGNNVCWLHAAFRAKLAGSSRGGVTT

A0A5D3CAC6 Uncharacterized protein5.9e-0738.89Show/hide
Query:  GVLGGPHYIV-------------------DIELLVPDILPQSAESSTR---------------------------DIFQQVLLRGNNVCWLHAAFRAKLA
        GV GGPHYIV                   +IELLVPD LP SAESS                             ++    ++R N+VCWLHA FRAK+A
Subjt:  GVLGGPHYIV-------------------DIELLVPDILPQSAESSTR---------------------------DIFQQVLLRGNNVCWLHAAFRAKLA

Query:  GSSRGGVT
        G S GGVT
Subjt:  GSSRGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGATATCGAGCTCCTGGTACCTGACATCCTGCCACAGTCTGCTGAAAGCTCCACAAGGGATATTTTTCAGCAGGTATT
GTTAAGAGGTAACAACGTATGTTGGCTTCACGCCGCCTTTCGGGCTAAGTTAGCAGGTAGTTCGAGAGGGGGTGTGACAACTTCCCTTTCAAATCTCTCCCAATTCTCTC
ATACTCTTCTCACACAAAACAAAAGAGAAACAACCGAGAAGACCCTTTGGAGGTGTCTCACTGTTCGGTTCGAGGAAATCGTTGAGTTCTTCAAGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGATATCGAGCTCCTGGTACCTGACATCCTGCCACAGTCTGCTGAAAGCTCCACAAGGGATATTTTTCAGCAGGTATT
GTTAAGAGGTAACAACGTATGTTGGCTTCACGCCGCCTTTCGGGCTAAGTTAGCAGGTAGTTCGAGAGGGGGTGTGACAACTTCCCTTTCAAATCTCTCCCAATTCTCTC
ATACTCTTCTCACACAAAACAAAAGAGAAACAACCGAGAAGACCCTTTGGAGGTGTCTCACTGTTCGGTTCGAGGAAATCGTTGAGTTCTTCAAGAAATAA
Protein sequenceShow/hide protein sequence
MGVLGGPHYIVDIELLVPDILPQSAESSTRDIFQQVLLRGNNVCWLHAAFRAKLAGSSRGGVTTSLSNLSQFSHTLLTQNKRETTEKTLWRCLTVRFEEIVEFFKK