; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0017644 (gene) of Snake gourd v1 genome

Gene IDTan0017644
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG01:90674740..90675108
RNA-Seq ExpressionTan0017644
SyntenyTan0017644
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4266453.1 unnamed protein product [Prunus armeniaca]1.0e-0933.05Show/hide
Query:  MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRST
        MG+GAVVR+    LM    + +    +  A EALAM+   QME D+G+  + +ESD   +++AI+        +G ++EE+++ +    F+ +   PR+ 
Subjt:  MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRST

Query:  NKVTHNLARWSISSKEYC
        N V H LA++++S  E C
Subjt:  NKVTHNLARWSISSKEYC

XP_030970599.1 uncharacterized protein LOC115990979 [Quercus lobata]1.4e-0933.33Show/hide
Query:  GIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFN--PRS
        G+GAV+R+H G +M +  E +         EALA L+ +Q+  DLG++N  +E D+  L++A+        P GL++E+++  +  + F+ LS++   R+
Subjt:  GIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFN--PRS

Query:  TNKVTHNLARWSISSKEYCV
         N V HNLA+ +IS  ++ V
Subjt:  TNKVTHNLARWSISSKEYCV

XP_038704726.1 uncharacterized protein LOC120000672 [Tripterygium wilfordii]5.5e-1137.17Show/hide
Query:  MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRST
        +G+GAV+RDH G++  A  E + G       +A A+++G Q+   +G  NL +ESD+  LV AI   A +  P G IL++IR  +     + L +  R  
Subjt:  MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRST

Query:  NKVTHNLARWSIS
        N+V H LAR SI+
Subjt:  NKVTHNLARWSIS

XP_038722039.1 uncharacterized protein LOC120014190 [Tripterygium wilfordii]5.5e-1135.78Show/hide
Query:  MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRST
        +GIG V+RDH+G + ++ VE+I G+   + AEA  +L GMQ+ G+ G+R+  VESD+   + AI   + Q    G +++ +R        +   F  R  
Subjt:  MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRST

Query:  NKVTHNLAR
        N V H LAR
Subjt:  NKVTHNLAR

XP_042960130.1 uncharacterized protein LOC122295108 [Carya illinoinensis]3.6e-1034.45Show/hide
Query:  MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRST
        MGIG VVRD+ G + V      Q   +  AAE+ AML  + +  +LG R + +E DAK +V A++ +   +   G ++E+I+  M       +SF  R  
Subjt:  MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRST

Query:  NKVTHNLARWSISSKEYCV
        NKV H  AR ++S    C+
Subjt:  NKVTHNLARWSISSKEYCV

TrEMBL top hitse value%identityAlignment
A0A2Z6MDF1 RNase H domain-containing protein2.5e-0933.61Show/hide
Query:  MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRST
        +G G  VRDHRGR ++A   I+  R N L  EA+A+ E M      G+ ++  ESD+K +V AI           L++  I+  ++ N    + F  R T
Subjt:  MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRST

Query:  NKVTHNLARWSISSKEYCV
        N   H+LAR + S    C+
Subjt:  NKVTHNLARWSISSKEYCV

A0A6J5TRH5 RNase H domain-containing protein5.1e-1033.05Show/hide
Query:  MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRST
        MG+GAVVR+    LM    + +    +  A EALAM+   QME D+G+  + +ESD   +++AI+        +G ++EE+++ +    F+ +   PR+ 
Subjt:  MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRST

Query:  NKVTHNLARWSISSKEYC
        N V H LA++++S  E C
Subjt:  NKVTHNLARWSISSKEYC

A0A6J5XRI2 RNase H domain-containing protein3.3e-0931.9Show/hide
Query:  GIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRSTN
        G+G VVR+  G  M A    +QG       E +A +EG+    D+G+ +  +E D +  +Q+I      +G  GL++EE++  +   R +G  + PR  N
Subjt:  GIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRSTN

Query:  KVTHNLARWSISSKEY
        KV H LA++ I   E+
Subjt:  KVTHNLARWSISSKEY

A0A6P5TBX9 uncharacterized protein LOC1107659032.5e-0933.62Show/hide
Query:  GIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRSTN
        G+G VVR+ RG  M A V+ IQ        + +A +EGM+   D+G   + +E DA+  ++ I      SG  GL+ EE +  +   R +   + PRS N
Subjt:  GIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRSTN

Query:  KVTHNLARWSISSKEY
        K  H LA ++IS  ++
Subjt:  KVTHNLARWSISSKEY

A0A6P9EHH2 uncharacterized protein LOC1183476713.3e-0933.03Show/hide
Query:  MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRST
        MG+G V+RD  G+L+ AK    + R++   AE  AMLE M++  +LG+  +W+E DAK ++ A++         G ++E+++Q +  +      F  R  
Subjt:  MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRST

Query:  NKVTHNLAR
        N+V H+LA+
Subjt:  NKVTHNLAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-0630.17Show/hide
Query:  GIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRSTN
        GIG ++R+  G ++      +    NVL AE  A+   +       Y+ +  ESDA+ LV  ++        Q   LE+I+Q +     +   F PR  N
Subjt:  GIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRSTN

Query:  KVTHNLARWSISSKEY
        KV   +AR SIS   Y
Subjt:  KVTHNLARWSISSKEY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAATAGGAGCGGTTGTGAGAGATCACAGAGGGAGACTGATGGTTGCGAAAGTGGAGATTATCCAAGGGCGAACGAATGTCTTAGCTGCTGAAGCTCTAGCGATGTT
GGAGGGAATGCAGATGGAAGGCGATTTAGGCTATCGAAATCTATGGGTCGAATCTGATGCCAAGTGTCTGGTTCAAGCCATCCATGAACATGCATTACAATCTGGTCCTC
AAGGCCTAATTTTGGAGGAAATTCGTCAATGCATGATAGGCAACCGTTTTATTGGGCTCAGTTTCAACCCACGTTCTACTAATAAGGTAACCCATAACCTGGCTAGATGG
TCCATTTCCTCTAAAGAGTATTGTGTTTTGGGTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAATAGGAGCGGTTGTGAGAGATCACAGAGGGAGACTGATGGTTGCGAAAGTGGAGATTATCCAAGGGCGAACGAATGTCTTAGCTGCTGAAGCTCTAGCGATGTT
GGAGGGAATGCAGATGGAAGGCGATTTAGGCTATCGAAATCTATGGGTCGAATCTGATGCCAAGTGTCTGGTTCAAGCCATCCATGAACATGCATTACAATCTGGTCCTC
AAGGCCTAATTTTGGAGGAAATTCGTCAATGCATGATAGGCAACCGTTTTATTGGGCTCAGTTTCAACCCACGTTCTACTAATAAGGTAACCCATAACCTGGCTAGATGG
TCCATTTCCTCTAAAGAGTATTGTGTTTTGGGTTCATGA
Protein sequenceShow/hide protein sequence
MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRSTNKVTHNLARW
SISSKEYCVLGS