| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA3472112.1 reverse transcriptase [Gossypium australe] | 4.0e-28 | 29.08 | Show/hide |
Query: RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKH-ERVKVLIDDHG-TWKEQVVKGIFSPMDIE
RY+ +FL A G+ PS WRSI REL G W++GNG I I+ DPW+ G S L V ++ H + V LID+ TWK+ ++ + +
Subjt: RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKH-ERVKVLIDDHG-TWKEQVVKGIFSPMDIE
Query: DILKIPIGNHLSKDEIIWNHDSKGLFSVKSAFREDWKPNVYW--------------------DWLEDN--------LSEANLKLALIILWSLWFFRNQVL
IL IP+ +D ++W HD+ G++SVKS + ++ W D EDN +++ KL I W++W+ RN+++
Subjt: DILKIPIGNHLSKDEIIWNHDSKGLFSVKSAFREDWKPNVYW--------------------DWLEDN--------LSEANLKLALIILWSLWFFRNQVL
Query: HN--EITVDFQLIYRQIDTYKLKFQSRENAINVTSWSENLSSHAAWEPPQPNHWKLNCDASWFEKKNRGGCGWIARDSEDLL
H + ++D + + + Y+L N ++++ + A W+PP P KLN DAS+ N G + R+ L+
Subjt: HN--EITVDFQLIYRQIDTYKLKFQSRENAINVTSWSENLSSHAAWEPPQPNHWKLNCDASWFEKKNRGGCGWIARDSEDLL
|
|
| KAA3479362.1 reverse transcriptase [Gossypium australe] | 2.8e-29 | 30.5 | Show/hide |
Query: RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKH-ERVKVLIDDHG-TWKEQVVKGIFSPMDIE
RY+ +FL A G+ PS WRSI REL G W++GNG + I+ DPW+ G S L V ++ H V LID+H TWK+ ++ + +
Subjt: RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKH-ERVKVLIDDHG-TWKEQVVKGIFSPMDIE
Query: DILKIPIGNHLSKDEIIWNHDSKGLFSVKSAFREDWKPNVYW--------------------DWLEDN--------LSEANLKLALIILWSLWFFRNQVL
IL IP+ + +D ++W+HD+ G+++VKS + ++ W D EDN +++ KL I W+LWF RN+++
Subjt: DILKIPIGNHLSKDEIIWNHDSKGLFSVKSAFREDWKPNVYW--------------------DWLEDN--------LSEANLKLALIILWSLWFFRNQVL
Query: HN--EITVDFQLIYRQIDTYKLKFQSRENAINVTSWSENLSSHAAWEPPQPNHWKLNCDASWFEKKNRGGCGWIARDSEDLL
H + ++D L + + Y+LK + +S+S+N A W+PP P KLN DAS+ + N G + + + L+
Subjt: HN--EITVDFQLIYRQIDTYKLKFQSRENAINVTSWSENLSSHAAWEPPQPNHWKLNCDASWFEKKNRGGCGWIARDSEDLL
|
|
| XP_023870384.1 uncharacterized protein LOC111982984, partial [Quercus suber] | 3.6e-29 | 33.07 | Show/hide |
Query: RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKHE--RVKVLIDD-HGTWKEQVVKGIFSPMDI
+YF +GDFL A G+NPS WR I + + ++G RW+VGNG IRI+ D WL +GSS + +F H+ RV LI TW E+V++ IF P+D
Subjt: RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKHE--RVKVLIDD-HGTWKEQVVKGIFSPMDI
Query: EDILKIPIGNHLSKDEIIWNHDSKGLFSVKSAF---REDWKPNVYWDWLEDNLSEANLKLALIILWSLWFFRNQVLHNEITVDFQLIYRQIDTYKLKFQS
+ IL IP+ L D IIW + G F+V+SA+ + + D E + L + I WSLW N V H + + I + Y + +
Subjt: EDILKIPIGNHLSKDEIIWNHDSKGLFSVKSAF---REDWKPNVYWDWLEDNLSEANLKLALIILWSLWFFRNQVLHNEITVDFQLIYRQIDTYKLKFQS
Query: RENAINVTSWSENLSSHAAWEPPQPNHWKLNCDASWFEKKNRGGCGWIARD
+++ V S +++ W PP P+ K+N D + + + G + RD
Subjt: RENAINVTSWSENLSSHAAWEPPQPNHWKLNCDASWFEKKNRGGCGWIARD
|
|
| XP_023897447.1 uncharacterized protein LOC112009345 [Quercus suber] | 1.2e-32 | 31.37 | Show/hide |
Query: RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKHERVKV---LIDDHGTWKEQVVKGIFSPMDI
+YF DFL A GNNPS WRSIL + + EKG RW+VG+G++I+++ D WL R S + LF H KV + + WKE++++ IF P+D+
Subjt: RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKHERVKV---LIDDHGTWKEQVVKGIFSPMDI
Query: EDILKIPIGNHLSKDEIIWNHDSKGLFSVKSAFR---------------------EDWKPNVYWDWLEDNLSEANLKLALIILWSLWFFRNQVLHNEITV
E IL IP+ +D +IW S G FSV+SA+R WK + + E + L + + W+ W RN++ H
Subjt: EDILKIPIGNHLSKDEIIWNHDSKGLFSVKSAFR---------------------EDWKPNVYWDWLEDNLSEANLKLALIILWSLWFFRNQVLHNEITV
Query: DFQLIYRQIDTYKLKFQSRENAINVTSWSENLSSHAAWEPPQPNHWKLNCDASWFEKKNRGGCGWIARDSE
+ I + ++ Y L++ + +V + E +S W PP P+ K+N D + + N G G + RD +
Subjt: DFQLIYRQIDTYKLKFQSRENAINVTSWSENLSSHAAWEPPQPNHWKLNCDASWFEKKNRGGCGWIARDSE
|
|
| XP_030487365.1 uncharacterized protein LOC115704292 [Cannabis sativa] | 6.8e-28 | 29.56 | Show/hide |
Query: RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPL---GVNDLFKHERVKVLIDDHGTWKEQVVKGIFSPMDI
RYF + FL A G++PSL W+SI WG+EL KG R+K+G+GNH+ +DPW+ P+ G N + V I W Q++ F +DI
Subjt: RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPL---GVNDLFKHERVKVLIDDHGTWKEQVVKGIFSPMDI
Query: EDILKIPIGNHLSKDEIIWNHDSKGLFSVKSAF--------REDWK---------------PNVYWDWLEDNLSEANLKLALIILWSLWFFRNQVLHNEI
+ IL I + D ++W+H G++SVKS + WK Y L + + L +LW +W RN+V+H I
Subjt: EDILKIPIGNHLSKDEIIWNHDSKGLFSVKSAF--------REDWK---------------PNVYWDWLEDNLSEANLKLALIILWSLWFFRNQVLHNEI
Query: ----TVDFQLIYRQIDTY-KLKFQSRENAINVTSW----SENLSSHA-AWEPPQPNHWKLNCDASWFEKKNRGGCGWIARDSEDLL---------NNFST
T Q R + + +LK R A+ + S +++ H W PPQ N +KLN DA+ ++ + G G I RD D + +F +
Subjt: ----TVDFQLIYRQIDTY-KLKFQSRENAINVTSW----SENLSSHA-AWEPPQPNHWKLNCDASWFEKKNRGGCGWIARDSEDLL---------NNFST
Query: DLTEISNLVAEVELVARS
D+ E L V V++S
Subjt: DLTEISNLVAEVELVARS
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5B6VSY9 Reverse transcriptase | 1.9e-28 | 29.08 | Show/hide |
Query: RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKH-ERVKVLIDDHG-TWKEQVVKGIFSPMDIE
RY+ +FL A G+ PS WRSI REL G W++GNG I I+ DPW+ G S L V ++ H + V LID+ TWK+ ++ + +
Subjt: RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKH-ERVKVLIDDHG-TWKEQVVKGIFSPMDIE
Query: DILKIPIGNHLSKDEIIWNHDSKGLFSVKSAFREDWKPNVYW--------------------DWLEDN--------LSEANLKLALIILWSLWFFRNQVL
IL IP+ +D ++W HD+ G++SVKS + ++ W D EDN +++ KL I W++W+ RN+++
Subjt: DILKIPIGNHLSKDEIIWNHDSKGLFSVKSAFREDWKPNVYW--------------------DWLEDN--------LSEANLKLALIILWSLWFFRNQVL
Query: HN--EITVDFQLIYRQIDTYKLKFQSRENAINVTSWSENLSSHAAWEPPQPNHWKLNCDASWFEKKNRGGCGWIARDSEDLL
H + ++D + + + Y+L N ++++ + A W+PP P KLN DAS+ N G + R+ L+
Subjt: HN--EITVDFQLIYRQIDTYKLKFQSRENAINVTSWSENLSSHAAWEPPQPNHWKLNCDASWFEKKNRGGCGWIARDSEDLL
|
|
| A0A5B6WEY4 Reverse transcriptase | 1.3e-29 | 30.5 | Show/hide |
Query: RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKH-ERVKVLIDDHG-TWKEQVVKGIFSPMDIE
RY+ +FL A G+ PS WRSI REL G W++GNG + I+ DPW+ G S L V ++ H V LID+H TWK+ ++ + +
Subjt: RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKH-ERVKVLIDDHG-TWKEQVVKGIFSPMDIE
Query: DILKIPIGNHLSKDEIIWNHDSKGLFSVKSAFREDWKPNVYW--------------------DWLEDN--------LSEANLKLALIILWSLWFFRNQVL
IL IP+ + +D ++W+HD+ G+++VKS + ++ W D EDN +++ KL I W+LWF RN+++
Subjt: DILKIPIGNHLSKDEIIWNHDSKGLFSVKSAFREDWKPNVYW--------------------DWLEDN--------LSEANLKLALIILWSLWFFRNQVL
Query: HN--EITVDFQLIYRQIDTYKLKFQSRENAINVTSWSENLSSHAAWEPPQPNHWKLNCDASWFEKKNRGGCGWIARDSEDLL
H + ++D L + + Y+LK + +S+S+N A W+PP P KLN DAS+ + N G + + + L+
Subjt: HN--EITVDFQLIYRQIDTYKLKFQSRENAINVTSWSENLSSHAAWEPPQPNHWKLNCDASWFEKKNRGGCGWIARDSEDLL
|
|
| A0A6J1DRA0 uncharacterized protein LOC111022423 | 2.1e-27 | 46.56 | Show/hide |
Query: GRYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKHERVKVLIDDHGTWKEQVVKGIFSPMDIED
G+YFK G FL+A G PS WRSILWGR+LF+KGYRWKVGNG I + DPWL R G+ P+ + ++ V L++ G W E V+ F + +
Subjt: GRYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKHERVKVLIDDHGTWKEQVVKGIFSPMDIED
Query: ILKIPIGNHLSKDEIIWNHDSKGLFSVKSAF
IL+ P+ + DEIIW D G+FSV+SA+
Subjt: ILKIPIGNHLSKDEIIWNHDSKGLFSVKSAF
|
|
| Q33AJ4 Retrotransposon protein, putative, unclassified | 1.3e-27 | 27.16 | Show/hide |
Query: YFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKHERVKVLIDDHGTWKEQVVKGIFSPMDIEDIL
Y+ +G + FG N S WR+I +G EL +KG W++GNG +R++ DPW+ R S P+ + V LID G+W + F PMD E IL
Subjt: YFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKHERVKVLIDDHGTWKEQVVKGIFSPMDIEDIL
Query: KIPIGNHLSKDEIIWNHDSKGLFSVKSAF------------------------REDWK-----------------PNVYWDWLEDNLSEANLKLALIILW
I + + L D I W+ D G FSV+SA+ WK P V D LE + E + L L++LW
Subjt: KIPIGNHLSKDEIIWNHDSKGLFSVKSAF------------------------REDWK-----------------PNVYWDWLEDNLSEANLKLALIILW
Query: SLWFFRNQVLHNEITVDFQLIYRQIDTYKLKF-----------QSRENAINVTSWSENLSSHA------AWEPPQPNHWKLNCDASWFEKKNRGGCGWIA
+W RN+++H + + R I++Y L + ++ ++V + + W P P KLN D S+ E +GG G +
Subjt: SLWFFRNQVLHNEITVDFQLIYRQIDTYKLKF-----------QSRENAINVTSWSENLSSHA------AWEPPQPNHWKLNCDASWFEKKNRGGCGWIA
Query: RDSEDLLNNFSTDLTEISNLVAEVELVARSLGLVL
R+ + + + + E EL+A GL L
Subjt: RDSEDLLNNFSTDLTEISNLVAEVELVARSLGLVL
|
|
| Q8S5K1 Putative retroelement | 1.3e-27 | 27.16 | Show/hide |
Query: YFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKHERVKVLIDDHGTWKEQVVKGIFSPMDIEDIL
Y+ +G + FG N S WR+I +G EL +KG W++GNG +R++ DPW+ R S P+ + V LID G+W + F PMD E IL
Subjt: YFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKHERVKVLIDDHGTWKEQVVKGIFSPMDIEDIL
Query: KIPIGNHLSKDEIIWNHDSKGLFSVKSAF------------------------REDWK-----------------PNVYWDWLEDNLSEANLKLALIILW
I + + L D I W+ D G FSV+SA+ WK P V D LE + E + L L++LW
Subjt: KIPIGNHLSKDEIIWNHDSKGLFSVKSAF------------------------REDWK-----------------PNVYWDWLEDNLSEANLKLALIILW
Query: SLWFFRNQVLHNEITVDFQLIYRQIDTYKLKF-----------QSRENAINVTSWSENLSSHA------AWEPPQPNHWKLNCDASWFEKKNRGGCGWIA
+W RN+++H + + R I++Y L + ++ ++V + + W P P KLN D S+ E +GG G +
Subjt: SLWFFRNQVLHNEITVDFQLIYRQIDTYKLKF-----------QSRENAINVTSWSENLSSHA------AWEPPQPNHWKLNCDASWFEKKNRGGCGWIA
Query: RDSEDLLNNFSTDLTEISNLVAEVELVARSLGLVL
R+ + + + + E EL+A GL L
Subjt: RDSEDLLNNFSTDLTEISNLVAEVELVARSLGLVL
|
|
| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT3G09510.1 Ribonuclease H-like superfamily protein | 2.5e-12 | 30.08 | Show/hide |
Query: RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKHERVKVLIDDHGT---WKEQVVKGIFSPMDI
RYFKD L A S W S+L G L +KG R +G+G +IRI D +D PL + +K + L + G+ W + + D
Subjt: RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKHERVKVLIDDHGT---WKEQVVKGIFSPMDI
Query: EDILKIPIGNHLSKDEIIWNHDSKGLFSVKSAF
I +I + D+IIWN+++ G ++V+S +
Subjt: EDILKIPIGNHLSKDEIIWNHDSKGLFSVKSAF
|
|
| AT4G29090.1 Ribonuclease H-like superfamily protein | 4.9e-16 | 32.39 | Show/hide |
Query: YLGRYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKHE--------RVKVLIDDHG-TWKEQVV
+ RYF D L AP G+ PS W+SI +E+ +G R VGNG I I+ WLD K +S L + + E +V LID+ G W++ V+
Subjt: YLGRYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWLDRKGSSVPLGVNDLFKHE--------RVKVLIDDHG-TWKEQVV
Query: KGIFSPMDIEDILKIPIGNHLSKDEIIWNHDSKGLFSVKSAF
+ +F ++ + I ++ G D W++ S G ++VKS +
Subjt: KGIFSPMDIEDILKIPIGNHLSKDEIIWNHDSKGLFSVKSAF
|
|
| ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein | 9.3e-07 | 37.74 | Show/hide |
Query: RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWL
RYF ++ G PS WRSI+ GREL +G +G+G H +++ D W+
Subjt: RYFKDGDFLKAPFGNNPSLNWRSILWGRELFEKGYRWKVGNGNHIRIFEDPWL
|
|
