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Tan0017786 (gene) of Snake gourd v1 genome

Gene IDTan0017786
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionprotein RADIALIS-like 4
Genome locationLG02:88520791..88522030
RNA-Seq ExpressionTan0017786
SyntenyTan0017786
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152694.1 protein RADIALIS-like 4 [Cucumis sativus]2.4e-4491.09Show/hide
Query:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKL
        MASS+FKSSG+S SSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDIL+QDLMHIESGKVPLPNYKPIA NG +Y DEQRLMKNLKL
Subjt:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_008444724.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]2.4e-4490.1Show/hide
Query:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKL
        MASS+FKSSG+S SSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDIL+QDLMHIESGKVPLPNYKP+  NG +Y DEQRLMKNLKL
Subjt:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_022951683.1 protein RADIALIS-like 4 [Cucurbita moschata]4.5e-4390.1Show/hide
Query:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKL
        MAS+TF+SSGSS SSWT KQNKKFEDAL  YPEDTPDRWQKVARAVGGKTAEEVKRHYDILV DLMHIESGKVPLP YKPIASN IV GDEQRLMKNLKL
Subjt:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_022961874.1 protein RADIALIS-like 4 [Cucurbita moschata]1.4e-4491.09Show/hide
Query:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKL
        MA+S FKSSGSS SSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDILVQDLMHIESGK+PLPNYKPI SNG VYGDEQRLMKNLKL
Subjt:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_038884277.1 protein RADIALIS-like 4 [Benincasa hispida]7.5e-4694.06Show/hide
Query:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKL
        MASS+FKSSGSS SSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDIL+QDLMHIESGKVPLPNYKPI SNG VY DEQRLMKNLKL
Subjt:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

TrEMBL top hitse value%identityAlignment
A0A0A0LPB1 SANT domain-containing protein1.2e-4491.09Show/hide
Query:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKL
        MASS+FKSSG+S SSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDIL+QDLMHIESGKVPLPNYKPIA NG +Y DEQRLMKNLKL
Subjt:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A1S3BBS2 protein RADIALIS-like 41.2e-4490.1Show/hide
Query:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKL
        MASS+FKSSG+S SSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDIL+QDLMHIESGKVPLPNYKP+  NG +Y DEQRLMKNLKL
Subjt:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A6J1GIE7 protein RADIALIS-like 42.2e-4390.1Show/hide
Query:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKL
        MAS+TF+SSGSS SSWT KQNKKFEDAL  YPEDTPDRWQKVARAVGGKTAEEVKRHYDILV DLMHIESGKVPLP YKPIASN IV GDEQRLMKNLKL
Subjt:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A6J1HFA3 protein RADIALIS-like 46.8e-4591.09Show/hide
Query:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKL
        MA+S FKSSGSS SSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDILVQDLMHIESGK+PLPNYKPI SNG VYGDEQRLMKNLKL
Subjt:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A6J1K2Q1 protein RADIALIS-like 46.8e-4591.09Show/hide
Query:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKL
        MA+S FKSSGSS SSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDILVQDLMHIESGK+PLPNYKPI SNG VYGDEQRLMKNLKL
Subjt:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.2e-2455.77Show/hide
Query:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYG---DEQRLMKN
        MASS+  S  S   SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT EEVKRHY++LVQD+  IE+G VP PNY+   S G   G    E++ M+N
Subjt:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYG---DEQRLMKN

Query:  LKLQ
        ++LQ
Subjt:  LKLQ

Q1A173 Protein RADIALIS-like 67.3e-2864.89Show/hide
Query:  SSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGD-EQRLMKNLKL
        +S SSIS WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDILV+DL++IE+G+VPLPNYK   SN     D + R MKNLK+
Subjt:  SSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGD-EQRLMKNLKL

Q58FS3 Transcription factor RADIALIS2.3e-2154.26Show/hide
Query:  SSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKLQ
        S+  S   W+ K+NK FE AL +Y +DTPDRW  VARAV G+T EEVK+HY+ILV+D+ +IESGKVP PNY+   + G +  DE+R  +NLK++
Subjt:  SSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKLQ

Q8GW75 Protein RADIALIS-like 51.5e-2564.29Show/hide
Query:  SSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPI----ASNGIVYGDEQRLMKNLKLQ
        SS SS SSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+AEEVKRHYDILV+DLM+IE   VPLP YK +     S GI   D  RLMKN+++Q
Subjt:  SSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPI----ASNGIVYGDEQRLMKNLKLQ

Q9SIJ5 Protein RADIALIS-like 28.4e-2456.31Show/hide
Query:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIA--SNGIVYGDEQRLMKNL
        MAS +  S GS   SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKT EE KR YD+LV+D+  IE+G VP P+YK     SN     DE++ M+++
Subjt:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIA--SNGIVYGDEQRLMKNL

Query:  KLQ
        KLQ
Subjt:  KLQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.1e-2664.29Show/hide
Query:  SSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPI----ASNGIVYGDEQRLMKNLKLQ
        SS SS SSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+AEEVKRHYDILV+DLM+IE   VPLP YK +     S GI   D  RLMKN+++Q
Subjt:  SSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPI----ASNGIVYGDEQRLMKNLKLQ

AT1G75250.1 RAD-like 61.1e-2670.13Show/hide
Query:  SSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASN
        +S SSIS WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDILV+DL++IE+G+VPLPNYK   SN
Subjt:  SSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASN

AT1G75250.2 RAD-like 65.2e-2964.89Show/hide
Query:  SSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGD-EQRLMKNLKL
        +S SSIS WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDILV+DL++IE+G+VPLPNYK   SN     D + R MKNLK+
Subjt:  SSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGD-EQRLMKNLKL

AT2G21650.1 Homeodomain-like superfamily protein5.9e-2556.31Show/hide
Query:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIA--SNGIVYGDEQRLMKNL
        MAS +  S GS   SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKT EE KR YD+LV+D+  IE+G VP P+YK     SN     DE++ M+++
Subjt:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIA--SNGIVYGDEQRLMKNL

Query:  KLQ
        KLQ
Subjt:  KLQ

AT4G39250.1 RAD-like 11.6e-2555.77Show/hide
Query:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYG---DEQRLMKN
        MASS+  S  S   SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT EEVKRHY++LVQD+  IE+G VP PNY+   S G   G    E++ M+N
Subjt:  MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYG---DEQRLMKN

Query:  LKLQ
        ++LQ
Subjt:  LKLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCCAGCACCTTTAAATCTTCAGGCAGTTCTATCTCCTCATGGACGCTTAAGCAAAACAAAAAATTTGAGGATGCTCTGGTTTTATACCCCGAGGACACACCTGA
TCGGTGGCAAAAGGTGGCCAGGGCAGTAGGCGGAAAAACTGCTGAGGAAGTAAAAAGGCACTATGATATCCTGGTGCAAGATCTCATGCATATAGAATCTGGAAAGGTTC
CTCTTCCTAACTACAAGCCCATTGCATCCAACGGTATAGTGTATGGTGATGAGCAGAGGCTCATGAAGAATCTAAAGCTCCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCCAGCACCTTTAAATCTTCAGGCAGTTCTATCTCCTCATGGACGCTTAAGCAAAACAAAAAATTTGAGGATGCTCTGGTTTTATACCCCGAGGACACACCTGA
TCGGTGGCAAAAGGTGGCCAGGGCAGTAGGCGGAAAAACTGCTGAGGAAGTAAAAAGGCACTATGATATCCTGGTGCAAGATCTCATGCATATAGAATCTGGAAAGGTTC
CTCTTCCTAACTACAAGCCCATTGCATCCAACGGTATAGTGTATGGTGATGAGCAGAGGCTCATGAAGAATCTAAAGCTCCAATAA
Protein sequenceShow/hide protein sequence
MASSTFKSSGSSISSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVQDLMHIESGKVPLPNYKPIASNGIVYGDEQRLMKNLKLQ