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Tan0017810 (gene) of Snake gourd v1 genome

Gene IDTan0017810
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG06:60658734..60660700
RNA-Seq ExpressionTan0017810
SyntenyTan0017810
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037371.1 gag/pol protein [Cucumis melo var. makuwa]3.6e-3547.22Show/hide
Query:  KILARNAPQSVKEAYDRWITANDKAKVHILASVFEVLAKKHEGMVSAREIMSSLQEMFGQSSGQIRHESLKYVYNSRMNEGSS-----------------
        ++ A NA ++V+EAY+RW  AN+KA+ +ILAS+ EVLAKKHE M++AREIM SLQEMFGQ+S QI+H++LKY+YN+RMNEG+S                 
Subjt:  KILARNAPQSVKEAYDRWITANDKAKVHILASVFEVLAKKHEGMVSAREIMSSLQEMFGQSSGQIRHESLKYVYNSRMNEGSS-----------------

Query:  -----------------------TFKSLMKNKEQANGEANLFAHSRRFQKGSSSGTKSCNSSSRLKNTQKKKIGGKGKAPGANKGKGKAKLAD-KGKCFH
                               TF+SLMK K Q  GEAN+   +R+F +GS+SG K   SSS  K  +KKK GG+G        K   K  D KG CFH
Subjt:  -----------------------TFKSLMKNKEQANGEANLFAHSRRFQKGSSSGTKSCNSSSRLKNTQKKKIGGKGKAPGANKGKGKAKLAD-KGKCFH

Query:  CNMDEHWKRNYTKYLA
        CN + HWKRN  KYLA
Subjt:  CNMDEHWKRNYTKYLA

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]2.6e-3343.28Show/hide
Query:  KILARNAPQSVKEAYDRWITANDKAKVHILASVFEVLAKKHEGMVSAREIMSSLQEMFGQSSGQIRHESLKYVYNSRMNEGSS-----------------
        ++ A NA ++V+E Y+RW  AN+KA+ +ILAS+ EVLAKKHE M++AREIM SLQEMFGQ+S QI+H++LKY+YN+RMNEG+S                 
Subjt:  KILARNAPQSVKEAYDRWITANDKAKVHILASVFEVLAKKHEGMVSAREIMSSLQEMFGQSSGQIRHESLKYVYNSRMNEGSS-----------------

Query:  ----------------------------------------------TFKSLMKNKEQANGEANLFAHSRRFQKGSSSGTKSCNSSSRLKNTQKKKIGGKG
                                                      TF+SLMK K Q  GEAN+   +R+F +GS+SGTKS  SSS  K  +KKK G   
Subjt:  ----------------------------------------------TFKSLMKNKEQANGEANLFAHSRRFQKGSSSGTKSCNSSSRLKNTQKKKIGGKG

Query:  KAPGANKGKGKAKLADKGKCFHCNMDEHWKRNYTKYLA
        KA  A     K   A KG CFHCN + HWKRN  KYLA
Subjt:  KAPGANKGKGKAKLADKGKCFHCNMDEHWKRNYTKYLA

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]2.6e-3343.28Show/hide
Query:  KILARNAPQSVKEAYDRWITANDKAKVHILASVFEVLAKKHEGMVSAREIMSSLQEMFGQSSGQIRHESLKYVYNSRMNEGSS-----------------
        ++ A NA ++V+E Y+RW  AN+KA+ +ILAS+ EVLAKKHE M++AREIM SLQEMFGQ+S QI+H++LKY+YN+RMNEG+S                 
Subjt:  KILARNAPQSVKEAYDRWITANDKAKVHILASVFEVLAKKHEGMVSAREIMSSLQEMFGQSSGQIRHESLKYVYNSRMNEGSS-----------------

Query:  ----------------------------------------------TFKSLMKNKEQANGEANLFAHSRRFQKGSSSGTKSCNSSSRLKNTQKKKIGGKG
                                                      TF+SLMK K Q  GEAN+   +R+F +GS+SGTKS  SSS  K  +KKK G   
Subjt:  ----------------------------------------------TFKSLMKNKEQANGEANLFAHSRRFQKGSSSGTKSCNSSSRLKNTQKKKIGGKG

Query:  KAPGANKGKGKAKLADKGKCFHCNMDEHWKRNYTKYLA
        KA  A     K   A KG CFHCN + HWKRN  KYLA
Subjt:  KAPGANKGKGKAKLADKGKCFHCNMDEHWKRNYTKYLA

KAA0060254.1 gag/pol protein [Cucumis melo var. makuwa]4.0e-3449.48Show/hide
Query:  KILARNAPQSVKEAYDRWITANDKAKVHILASVFEVLAKKHEGMVSAREIMSSLQEMFGQSSGQIRHESLKYVYNSRMNEGSSTFKSLMK-----NKEQA
        ++ A NA Q+V+E Y+RW   N+K + +ILAS+ EVLAKKHE M++AREIM SLQEMFGQ+S QI H++LKY+YN+RMNEG+S  + ++      N  + 
Subjt:  KILARNAPQSVKEAYDRWITANDKAKVHILASVFEVLAKKHEGMVSAREIMSSLQEMFGQSSGQIRHESLKYVYNSRMNEGSSTFKSLMK-----NKEQA

Query:  N------------GEANLFAHSRRFQKGSSSGTKSCNSSSRLKNTQKKKIGGKGKAPGANKGKGKAKLADKGKCFHCNMDEHWKRNYTKYLA
        N            GEAN+   +R+F +GS+SGTKS  SSS  K  +KKK G   KA  A     K   A KG CFH N + HWKRN  KYLA
Subjt:  N------------GEANLFAHSRRFQKGSSSGTKSCNSSSRLKNTQKKKIGGKGKAPGANKGKGKAKLADKGKCFHCNMDEHWKRNYTKYLA

TYJ97618.1 gag/pol protein [Cucumis melo var. makuwa]4.0e-3449.48Show/hide
Query:  KILARNAPQSVKEAYDRWITANDKAKVHILASVFEVLAKKHEGMVSAREIMSSLQEMFGQSSGQIRHESLKYVYNSRMNEGSSTFKSLMK-----NKEQA
        ++ A NA Q+V+E Y+RW   N+K + +ILAS+ EVLAKKHE M++AREIM SLQEMFGQ+S QI H++LKY+YN+RMNEG+S  + ++      N  + 
Subjt:  KILARNAPQSVKEAYDRWITANDKAKVHILASVFEVLAKKHEGMVSAREIMSSLQEMFGQSSGQIRHESLKYVYNSRMNEGSSTFKSLMK-----NKEQA

Query:  N------------GEANLFAHSRRFQKGSSSGTKSCNSSSRLKNTQKKKIGGKGKAPGANKGKGKAKLADKGKCFHCNMDEHWKRNYTKYLA
        N            GEAN+   +R+F +GS+SGTKS  SSS  K  +KKK G   KA  A     K   A KG CFH N + HWKRN  KYLA
Subjt:  N------------GEANLFAHSRRFQKGSSSGTKSCNSSSRLKNTQKKKIGGKGKAPGANKGKGKAKLADKGKCFHCNMDEHWKRNYTKYLA

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein1.3e-3343.28Show/hide
Query:  KILARNAPQSVKEAYDRWITANDKAKVHILASVFEVLAKKHEGMVSAREIMSSLQEMFGQSSGQIRHESLKYVYNSRMNEGSS-----------------
        ++ A NA ++V+E Y+RW  AN+KA+ +ILAS+ EVLAKKHE M++AREIM SLQEMFGQ+S QI+H++LKY+YN+RMNEG+S                 
Subjt:  KILARNAPQSVKEAYDRWITANDKAKVHILASVFEVLAKKHEGMVSAREIMSSLQEMFGQSSGQIRHESLKYVYNSRMNEGSS-----------------

Query:  ----------------------------------------------TFKSLMKNKEQANGEANLFAHSRRFQKGSSSGTKSCNSSSRLKNTQKKKIGGKG
                                                      TF+SLMK K Q  GEAN+   +R+F +GS+SGTKS  SSS  K  +KKK G   
Subjt:  ----------------------------------------------TFKSLMKNKEQANGEANLFAHSRRFQKGSSSGTKSCNSSSRLKNTQKKKIGGKG

Query:  KAPGANKGKGKAKLADKGKCFHCNMDEHWKRNYTKYLA
        KA  A     K   A KG CFHCN + HWKRN  KYLA
Subjt:  KAPGANKGKGKAKLADKGKCFHCNMDEHWKRNYTKYLA

A0A5A7T706 Gag/pol protein1.8e-3547.22Show/hide
Query:  KILARNAPQSVKEAYDRWITANDKAKVHILASVFEVLAKKHEGMVSAREIMSSLQEMFGQSSGQIRHESLKYVYNSRMNEGSS-----------------
        ++ A NA ++V+EAY+RW  AN+KA+ +ILAS+ EVLAKKHE M++AREIM SLQEMFGQ+S QI+H++LKY+YN+RMNEG+S                 
Subjt:  KILARNAPQSVKEAYDRWITANDKAKVHILASVFEVLAKKHEGMVSAREIMSSLQEMFGQSSGQIRHESLKYVYNSRMNEGSS-----------------

Query:  -----------------------TFKSLMKNKEQANGEANLFAHSRRFQKGSSSGTKSCNSSSRLKNTQKKKIGGKGKAPGANKGKGKAKLAD-KGKCFH
                               TF+SLMK K Q  GEAN+   +R+F +GS+SG K   SSS  K  +KKK GG+G        K   K  D KG CFH
Subjt:  -----------------------TFKSLMKNKEQANGEANLFAHSRRFQKGSSSGTKSCNSSSRLKNTQKKKIGGKGKAPGANKGKGKAKLAD-KGKCFH

Query:  CNMDEHWKRNYTKYLA
        CN + HWKRN  KYLA
Subjt:  CNMDEHWKRNYTKYLA

A0A5A7UYX7 Gag/pol protein1.9e-3449.48Show/hide
Query:  KILARNAPQSVKEAYDRWITANDKAKVHILASVFEVLAKKHEGMVSAREIMSSLQEMFGQSSGQIRHESLKYVYNSRMNEGSSTFKSLMK-----NKEQA
        ++ A NA Q+V+E Y+RW   N+K + +ILAS+ EVLAKKHE M++AREIM SLQEMFGQ+S QI H++LKY+YN+RMNEG+S  + ++      N  + 
Subjt:  KILARNAPQSVKEAYDRWITANDKAKVHILASVFEVLAKKHEGMVSAREIMSSLQEMFGQSSGQIRHESLKYVYNSRMNEGSSTFKSLMK-----NKEQA

Query:  N------------GEANLFAHSRRFQKGSSSGTKSCNSSSRLKNTQKKKIGGKGKAPGANKGKGKAKLADKGKCFHCNMDEHWKRNYTKYLA
        N            GEAN+   +R+F +GS+SGTKS  SSS  K  +KKK G   KA  A     K   A KG CFH N + HWKRN  KYLA
Subjt:  N------------GEANLFAHSRRFQKGSSSGTKSCNSSSRLKNTQKKKIGGKGKAPGANKGKGKAKLADKGKCFHCNMDEHWKRNYTKYLA

A0A5D3BHG7 Gag/pol protein1.9e-3449.48Show/hide
Query:  KILARNAPQSVKEAYDRWITANDKAKVHILASVFEVLAKKHEGMVSAREIMSSLQEMFGQSSGQIRHESLKYVYNSRMNEGSSTFKSLMK-----NKEQA
        ++ A NA Q+V+E Y+RW   N+K + +ILAS+ EVLAKKHE M++AREIM SLQEMFGQ+S QI H++LKY+YN+RMNEG+S  + ++      N  + 
Subjt:  KILARNAPQSVKEAYDRWITANDKAKVHILASVFEVLAKKHEGMVSAREIMSSLQEMFGQSSGQIRHESLKYVYNSRMNEGSSTFKSLMK-----NKEQA

Query:  N------------GEANLFAHSRRFQKGSSSGTKSCNSSSRLKNTQKKKIGGKGKAPGANKGKGKAKLADKGKCFHCNMDEHWKRNYTKYLA
        N            GEAN+   +R+F +GS+SGTKS  SSS  K  +KKK G   KA  A     K   A KG CFH N + HWKRN  KYLA
Subjt:  N------------GEANLFAHSRRFQKGSSSGTKSCNSSSRLKNTQKKKIGGKGKAPGANKGKGKAKLADKGKCFHCNMDEHWKRNYTKYLA

A0A5D3CPJ6 Gag/pol protein1.3e-3343.28Show/hide
Query:  KILARNAPQSVKEAYDRWITANDKAKVHILASVFEVLAKKHEGMVSAREIMSSLQEMFGQSSGQIRHESLKYVYNSRMNEGSS-----------------
        ++ A NA ++V+E Y+RW  AN+KA+ +ILAS+ EVLAKKHE M++AREIM SLQEMFGQ+S QI+H++LKY+YN+RMNEG+S                 
Subjt:  KILARNAPQSVKEAYDRWITANDKAKVHILASVFEVLAKKHEGMVSAREIMSSLQEMFGQSSGQIRHESLKYVYNSRMNEGSS-----------------

Query:  ----------------------------------------------TFKSLMKNKEQANGEANLFAHSRRFQKGSSSGTKSCNSSSRLKNTQKKKIGGKG
                                                      TF+SLMK K Q  GEAN+   +R+F +GS+SGTKS  SSS  K  +KKK G   
Subjt:  ----------------------------------------------TFKSLMKNKEQANGEANLFAHSRRFQKGSSSGTKSCNSSSRLKNTQKKKIGGKG

Query:  KAPGANKGKGKAKLADKGKCFHCNMDEHWKRNYTKYLA
        KA  A     K   A KG CFHCN + HWKRN  KYLA
Subjt:  KAPGANKGKGKAKLADKGKCFHCNMDEHWKRNYTKYLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGCAAACATAGGAACTTGGGAACTTCAGTGGGAGAAAACGAGATGTTCGCATCGAGTTTACTCTCACGTCCTCAAGAGTTCAGACCGTGAGTTCCATGCTCGGCT
ACGTGGCGTCAATCGGGCGCCCCTCTACGGTATATTTTTGCATGGTTCAATACCAAGGAATGTCCTCAAAATTCTTGCCCGTAACGCTCCTCAATCTGTTAAGGAGGCGT
ACGATCGCTGGATCACGGCCAATGATAAGGCCAAGGTCCACATTTTGGCTAGTGTTTTTGAAGTTCTGGCCAAAAAACATGAGGGTATGGTCTCAGCTCGTGAGATCATG
AGTTCACTGCAGGAAATGTTTGGACAATCGTCTGGACAGATTCGACACGAATCCCTCAAATACGTTTATAACTCTCGTATGAATGAGGGGTCATCGACTTTCAAGTCTCT
TATGAAGAATAAGGAACAGGCTAATGGAGAGGCAAATCTGTTTGCCCATTCCAGAAGGTTCCAGAAGGGTTCATCCTCTGGGACTAAGTCCTGTAACTCTTCTTCTCGGC
TTAAGAATACCCAAAAGAAGAAAATAGGAGGGAAAGGGAAGGCACCTGGTGCTAACAAAGGCAAGGGAAAAGCAAAGCTTGCAGATAAAGGAAAGTGTTTCCACTGCAAC
ATGGATGAGCACTGGAAGAGAAACTACACAAAATACCTTGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATGCAAACATAGGAACTTGGGAACTTCAGTGGGAGAAAACGAGATGTTCGCATCGAGTTTACTCTCACGTCCTCAAGAGTTCAGACCGTGAGTTCCATGCTCGGCT
ACGTGGCGTCAATCGGGCGCCCCTCTACGGTATATTTTTGCATGGTTCAATACCAAGGAATGTCCTCAAAATTCTTGCCCGTAACGCTCCTCAATCTGTTAAGGAGGCGT
ACGATCGCTGGATCACGGCCAATGATAAGGCCAAGGTCCACATTTTGGCTAGTGTTTTTGAAGTTCTGGCCAAAAAACATGAGGGTATGGTCTCAGCTCGTGAGATCATG
AGTTCACTGCAGGAAATGTTTGGACAATCGTCTGGACAGATTCGACACGAATCCCTCAAATACGTTTATAACTCTCGTATGAATGAGGGGTCATCGACTTTCAAGTCTCT
TATGAAGAATAAGGAACAGGCTAATGGAGAGGCAAATCTGTTTGCCCATTCCAGAAGGTTCCAGAAGGGTTCATCCTCTGGGACTAAGTCCTGTAACTCTTCTTCTCGGC
TTAAGAATACCCAAAAGAAGAAAATAGGAGGGAAAGGGAAGGCACCTGGTGCTAACAAAGGCAAGGGAAAAGCAAAGCTTGCAGATAAAGGAAAGTGTTTCCACTGCAAC
ATGGATGAGCACTGGAAGAGAAACTACACAAAATACCTTGCTTAG
Protein sequenceShow/hide protein sequence
MHANIGTWELQWEKTRCSHRVYSHVLKSSDREFHARLRGVNRAPLYGIFLHGSIPRNVLKILARNAPQSVKEAYDRWITANDKAKVHILASVFEVLAKKHEGMVSAREIM
SSLQEMFGQSSGQIRHESLKYVYNSRMNEGSSTFKSLMKNKEQANGEANLFAHSRRFQKGSSSGTKSCNSSSRLKNTQKKKIGGKGKAPGANKGKGKAKLADKGKCFHCN
MDEHWKRNYTKYLA