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Tan0017811 (gene) of Snake gourd v1 genome

Gene IDTan0017811
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG10:50842382..50842615
RNA-Seq ExpressionTan0017811
SyntenyTan0017811
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]4.9e-2167.53Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVHGMFGQQSTQARHNALKYIYNSRMPEGTSFWDHVLDMMVHFNIAESNGASIDESS
        +S++LAKKHE M+TA+EIMDS+  MFGQ S Q +H+ALKYIYN+RM EG S  +HVL+MMVHFN+AE NGA IDE+S
Subjt:  MSDILAKKHEGMITAKEIMDSVHGMFGQQSTQARHNALKYIYNSRMPEGTSFWDHVLDMMVHFNIAESNGASIDESS

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]4.9e-2167.53Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVHGMFGQQSTQARHNALKYIYNSRMPEGTSFWDHVLDMMVHFNIAESNGASIDESS
        +S++LAKKHE M+TA+EIMDS+  MFGQ S Q +H+ALKYIYN+RM EG S  +HVL+MMVHFN+AE NGA IDE+S
Subjt:  MSDILAKKHEGMITAKEIMDSVHGMFGQQSTQARHNALKYIYNSRMPEGTSFWDHVLDMMVHFNIAESNGASIDESS

XP_022152352.1 uncharacterized protein LOC111020095 [Momordica charantia]2.6e-2273.33Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVHGMFGQQSTQARHNALKYIYNSRMPEGTSFWDHVLDMMVHFNIAESNGASIDE
        +SD+LAKKHE  ITAKEIMDS+  MFGQ S+QARH ALK+IYNSRM EG+S  +HVL++MVHFN+AESNGA IDE
Subjt:  MSDILAKKHEGMITAKEIMDSVHGMFGQQSTQARHNALKYIYNSRMPEGTSFWDHVLDMMVHFNIAESNGASIDE

XP_022155999.1 uncharacterized protein LOC111022974 [Momordica charantia]3.4e-2270.13Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVHGMFGQQSTQARHNALKYIYNSRMPEGTSFWDHVLDMMVHFNIAESNGASIDESS
        +SD+LAKKHE M+ A+EIMDS+  MFGQ S QARH ALK+IYNSRM EGTS  +HVL++MVHFN+AE NGA IDE S
Subjt:  MSDILAKKHEGMITAKEIMDSVHGMFGQQSTQARHNALKYIYNSRMPEGTSFWDHVLDMMVHFNIAESNGASIDESS

XP_022158197.1 uncharacterized protein LOC111024734 [Momordica charantia]2.9e-2167.53Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVHGMFGQQSTQARHNALKYIYNSRMPEGTSFWDHVLDMMVHFNIAESNGASIDESS
        +SD+LAKKHE  +T KEIMDS+  MFGQ S QARH ALK++YNSRM EG+S  +HVL++MVHFN+AESNG  IDE S
Subjt:  MSDILAKKHEGMITAKEIMDSVHGMFGQQSTQARHNALKYIYNSRMPEGTSFWDHVLDMMVHFNIAESNGASIDESS

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein2.4e-2167.53Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVHGMFGQQSTQARHNALKYIYNSRMPEGTSFWDHVLDMMVHFNIAESNGASIDESS
        +S++LAKKHE M+TA+EIMDS+  MFGQ S Q +H+ALKYIYN+RM EG S  +HVL+MMVHFN+AE NGA IDE+S
Subjt:  MSDILAKKHEGMITAKEIMDSVHGMFGQQSTQARHNALKYIYNSRMPEGTSFWDHVLDMMVHFNIAESNGASIDESS

A0A5D3CPJ6 Gag/pol protein2.4e-2167.53Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVHGMFGQQSTQARHNALKYIYNSRMPEGTSFWDHVLDMMVHFNIAESNGASIDESS
        +S++LAKKHE M+TA+EIMDS+  MFGQ S Q +H+ALKYIYN+RM EG S  +HVL+MMVHFN+AE NGA IDE+S
Subjt:  MSDILAKKHEGMITAKEIMDSVHGMFGQQSTQARHNALKYIYNSRMPEGTSFWDHVLDMMVHFNIAESNGASIDESS

A0A6J1DFZ2 uncharacterized protein LOC1110200951.2e-2273.33Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVHGMFGQQSTQARHNALKYIYNSRMPEGTSFWDHVLDMMVHFNIAESNGASIDE
        +SD+LAKKHE  ITAKEIMDS+  MFGQ S+QARH ALK+IYNSRM EG+S  +HVL++MVHFN+AESNGA IDE
Subjt:  MSDILAKKHEGMITAKEIMDSVHGMFGQQSTQARHNALKYIYNSRMPEGTSFWDHVLDMMVHFNIAESNGASIDE

A0A6J1DRZ2 uncharacterized protein LOC1110229741.6e-2270.13Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVHGMFGQQSTQARHNALKYIYNSRMPEGTSFWDHVLDMMVHFNIAESNGASIDESS
        +SD+LAKKHE M+ A+EIMDS+  MFGQ S QARH ALK+IYNSRM EGTS  +HVL++MVHFN+AE NGA IDE S
Subjt:  MSDILAKKHEGMITAKEIMDSVHGMFGQQSTQARHNALKYIYNSRMPEGTSFWDHVLDMMVHFNIAESNGASIDESS

A0A6J1DWL0 uncharacterized protein LOC1110247341.4e-2167.53Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVHGMFGQQSTQARHNALKYIYNSRMPEGTSFWDHVLDMMVHFNIAESNGASIDESS
        +SD+LAKKHE  +T KEIMDS+  MFGQ S QARH ALK++YNSRM EG+S  +HVL++MVHFN+AESNG  IDE S
Subjt:  MSDILAKKHEGMITAKEIMDSVHGMFGQQSTQARHNALKYIYNSRMPEGTSFWDHVLDMMVHFNIAESNGASIDESS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGACATATTAGCCAAGAAGCATGAGGGCATGATTACCGCCAAGGAAATCATGGATTCTGTGCATGGTATGTTTGGACAACAGTCCACACAAGCCCGACATAATGC
CCTAAAATACATATATAACTCGAGAATGCCAGAGGGTACATCTTTTTGGGATCATGTCCTGGATATGATGGTGCACTTTAACATCGCGGAGTCGAATGGTGCTTCCATCG
ATGAGTCGAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGACATATTAGCCAAGAAGCATGAGGGCATGATTACCGCCAAGGAAATCATGGATTCTGTGCATGGTATGTTTGGACAACAGTCCACACAAGCCCGACATAATGC
CCTAAAATACATATATAACTCGAGAATGCCAGAGGGTACATCTTTTTGGGATCATGTCCTGGATATGATGGTGCACTTTAACATCGCGGAGTCGAATGGTGCTTCCATCG
ATGAGTCGAGCTAG
Protein sequenceShow/hide protein sequence
MSDILAKKHEGMITAKEIMDSVHGMFGQQSTQARHNALKYIYNSRMPEGTSFWDHVLDMMVHFNIAESNGASIDESS