; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0017814 (gene) of Snake gourd v1 genome

Gene IDTan0017814
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposon gag protein
Genome locationLG08:27594859..27601580
RNA-Seq ExpressionTan0017814
SyntenyTan0017814
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042099.1 Retrotransposon gag protein [Cucumis melo var. makuwa]8.5e-2949.19Show/hide
Query:  RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSI
        + +++ Q  +S+TL EFF   FL  H KE  E +         V   Y  +EE D+  E+K+RTSVFDRIKPSTTR SVFQR+SMA  EEEN   TS S 
Subjt:  RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSI

Query:  RTSVFQRLNVSTSKKRRPSTSVFYRLKVTSGQDESMMNTSKAELFDEVSHN--KVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL
        +T  F+RL++STSKK RPSTS F RLK+T+ + +  M T KA+LF E +++  K+ + VPSRMKRK +V I+T+GSL     L++
Subjt:  RTSVFQRLNVSTSKKRRPSTSVFYRLKVTSGQDESMMNTSKAELFDEVSHN--KVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-2750Show/hide
Query:  RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSI
        + ++  Q  +S+TL EFF   FL  H +E  E +         V   Y   EE D+  E+KQRTSVFDRIKP TTR SVFQR+SMA  EEEN   TS+  
Subjt:  RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSI

Query:  RTSVFQRLNVSTSKKRRPSTSVFYRLKVTSGQDESMMNTSKAELF-DEVSHNKVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL
        RTS F+RL++STSKK RPSTS F RLK+T+ Q +  M + KA+ F +E   +K+ S VPSRMKRK  V INTEGSL      ++
Subjt:  RTSVFQRLNVSTSKKRRPSTSVFYRLKVTSGQDESMMNTSKAELF-DEVSHNKVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-2748.91Show/hide
Query:  RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSI
        + +++ Q  +S+TL EF S  FL  H +E  E +         V   Y   EE D+  E+KQRTSVFDRIKP TTR SVFQR+SMA  EE+N   TS+  
Subjt:  RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSI

Query:  RTSVFQRLNVSTSKKRRPSTSVFYRLKVTSGQDESMMNTSKAELF-DEVSHNKVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL
        RTS F+RL++STSKK RPSTS F RLK+T+ Q +  M + KA+ F +E   +K+ + VPSRMKRK  V INTEGSL      ++
Subjt:  RTSVFQRLNVSTSKKRRPSTSVFYRLKVTSGQDESMMNTSKAELF-DEVSHNKVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL

KAA0062746.1 Retrotransposon gag protein [Cucumis melo var. makuwa]2.1e-2749.71Show/hide
Query:  SMTLKEFFSGKFL--HIKEKEE----NSVGVY-----YIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSIRTSVFQRLNV
        S+TL EF    FL  H+KE  E    ++V V      Y+ ++E D+  E+K+RTS+FDRIKPSTTR SVF+R+SMA  EEEN  LTS+S +TS F+RL++
Subjt:  SMTLKEFFSGKFL--HIKEKEE----NSVGVY-----YIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSIRTSVFQRLNV

Query:  STSKKRRPSTSVFYRLKVTSGQDESMMNTSKAELFDEVSHN--KVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL
        STSKK RPS S F RLK+T+ Q +  + T K + F E +++  K+ + VPSRMKRK  V I+TEGSL     L++
Subjt:  STSKKRRPSTSVFYRLKVTSGQDESMMNTSKAELFDEVSHN--KVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-2748.91Show/hide
Query:  RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSI
        + +++ Q  +S+TL EF S  FL  H +E  E +         V   Y   EE D+  E+KQRTSVFDRIKP TTR SVFQR+SMA  EE+N   TS+  
Subjt:  RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSI

Query:  RTSVFQRLNVSTSKKRRPSTSVFYRLKVTSGQDESMMNTSKAELF-DEVSHNKVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL
        RTS F+RL++STSKK RPSTS F RLK+T+ Q +  M + KA+ F +E   +K+ + VPSRMKRK  V INTEGSL      ++
Subjt:  RTSVFQRLNVSTSKKRRPSTSVFYRLKVTSGQDESMMNTSKAELF-DEVSHNKVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL

TrEMBL top hitse value%identityAlignment
A0A5A7TL86 Retrotransposon gag protein4.1e-2949.19Show/hide
Query:  RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSI
        + +++ Q  +S+TL EFF   FL  H KE  E +         V   Y  +EE D+  E+K+RTSVFDRIKPSTTR SVFQR+SMA  EEEN   TS S 
Subjt:  RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSI

Query:  RTSVFQRLNVSTSKKRRPSTSVFYRLKVTSGQDESMMNTSKAELFDEVSHN--KVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL
        +T  F+RL++STSKK RPSTS F RLK+T+ + +  M T KA+LF E +++  K+ + VPSRMKRK +V I+T+GSL     L++
Subjt:  RTSVFQRLNVSTSKKRRPSTSVFYRLKVTSGQDESMMNTSKAELFDEVSHN--KVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL

A0A5A7TQ06 Retrotransposon gag protein5.9e-2850Show/hide
Query:  RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSI
        + ++  Q  +S+TL EFF   FL  H +E  E +         V   Y   EE D+  E+KQRTSVFDRIKP TTR SVFQR+SMA  EEEN   TS+  
Subjt:  RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSI

Query:  RTSVFQRLNVSTSKKRRPSTSVFYRLKVTSGQDESMMNTSKAELF-DEVSHNKVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL
        RTS F+RL++STSKK RPSTS F RLK+T+ Q +  M + KA+ F +E   +K+ S VPSRMKRK  V INTEGSL      ++
Subjt:  RTSVFQRLNVSTSKKRRPSTSVFYRLKVTSGQDESMMNTSKAELF-DEVSHNKVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL

A0A5A7UI09 Retrotransposon gag protein5.9e-2848.91Show/hide
Query:  RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSI
        + +++ Q  +S+TL EF S  FL  H +E  E +         V   Y   EE D+  E+KQRTSVFDRIKP TTR SVFQR+SMA  EE+N   TS+  
Subjt:  RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSI

Query:  RTSVFQRLNVSTSKKRRPSTSVFYRLKVTSGQDESMMNTSKAELF-DEVSHNKVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL
        RTS F+RL++STSKK RPSTS F RLK+T+ Q +  M + KA+ F +E   +K+ + VPSRMKRK  V INTEGSL      ++
Subjt:  RTSVFQRLNVSTSKKRRPSTSVFYRLKVTSGQDESMMNTSKAELF-DEVSHNKVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL

A0A5A7V8H3 Retrotransposon gag protein1.0e-2749.71Show/hide
Query:  SMTLKEFFSGKFL--HIKEKEE----NSVGVY-----YIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSIRTSVFQRLNV
        S+TL EF    FL  H+KE  E    ++V V      Y+ ++E D+  E+K+RTS+FDRIKPSTTR SVF+R+SMA  EEEN  LTS+S +TS F+RL++
Subjt:  SMTLKEFFSGKFL--HIKEKEE----NSVGVY-----YIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSIRTSVFQRLNV

Query:  STSKKRRPSTSVFYRLKVTSGQDESMMNTSKAELFDEVSHN--KVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL
        STSKK RPS S F RLK+T+ Q +  + T K + F E +++  K+ + VPSRMKRK  V I+TEGSL     L++
Subjt:  STSKKRRPSTSVFYRLKVTSGQDESMMNTSKAELFDEVSHN--KVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL

A0A5D3CCI8 Retrotransposon gag protein5.9e-2848.91Show/hide
Query:  RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSI
        + +++ Q  +S+TL EF S  FL  H +E  E +         V   Y   EE D+  E+KQRTSVFDRIKP TTR SVFQR+SMA  EE+N   TS+  
Subjt:  RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSI

Query:  RTSVFQRLNVSTSKKRRPSTSVFYRLKVTSGQDESMMNTSKAELF-DEVSHNKVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL
        RTS F+RL++STSKK RPSTS F RLK+T+ Q +  M + KA+ F +E   +K+ + VPSRMKRK  V INTEGSL      ++
Subjt:  RTSVFQRLNVSTSKKRRPSTSVFYRLKVTSGQDESMMNTSKAELF-DEVSHNKVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCTATTACCCACAGCTGCTCCAATGAGCTGAGGTCGCAAGAAGATGAAGTAATGACACTGTCGGGGGCATCAACTAACAACAAGTTCTTGATCAAGTTTAACCC
TTTGTTTGATTCTAATTCTGATGTAGTGTCCGTCATGATGACTAAAACAAACACTATGGAAGAAAGAATAACGGGGATGGAAGAACAAATCAACGACTTAATGAAGGCGA
TTAAAGAAAAAGATTCTCAAATCGCATACTTAAAGAGTCAGATTGAGAATCAAGATGTCGTTGAATCAAGTCAAACTCCTAGAAGCAAAGAATATTCTCAACTTGGAAAA
TCTATGACCTTAAAGGAATTCTTCTCTGGAAAATTCCTTCACATAAAAGAAAAGGAAGAAAACTCTGTTGGTGTTTACTACATTGAAGCAGAAGAAGCTGATGACGTAAA
AGAAGTCAAACAAAGGACTTCTGTCTTCGATCGCATTAAGCCTTCAACTACTCGACCTTCAGTCTTCCAAAGGATGAGTATGGCCGCGACGGAAGAAGAAAACCTAGATC
TAACTTCTAGCTCCATTCGAACTTCAGTCTTTCAAAGGCTAAATGTCTCTACTTCAAAGAAACGTCGACCTTCAACATCTGTTTTTTACCGCCTCAAAGTAACAAGTGGT
CAAGATGAAAGCATGATGAACACCTCGAAAGCAGAACTGTTCGATGAGGTGAGCCATAACAAGGTCCAAAGTACCGTCCCTTCACGTATGAAAAGGAAGTTCTACGTTCT
CATAAATACAGAGGGCTCCTTGAAGACTTCGTCGTCGCTTCTTCTCAAAGTTCGAGGACTTCGTCGTCATTTCTTCTCAAAACTCGAAGACTTCGTCGTCGTTTCTTCTC
AAAGCTCGAAGACTCTCGCCGCCGCTTCCTCTCAAAGCTCCGGGTTCCGCTGCCGCTTCTTCTCAAAGCTCAACTCGAAGACTCCGTCGTCGCCTCTTCTCAAAGCTCGA
AGACTTCGTCGTTGCTTCTTCTCAAAGCTCGAGGACTCCAACGTCTTCAAAGACTCTGGCGGTGCTTCCTCTTCAAAGACTCTAGCGGTGCTTCGTCTTCAAAGACTCTG
GAAGTGCGGTCGCTTCGTCTTCAAAGACTCTGGCAGTGCGGTCGCTTCGTCTTCAAAGACTCTGACAGTGCAGTCGCTTTGTCTTCAAAGTCTCTGGCGATGCGGTCGTT
TCGTCTTCAAAGTCTCCGGCGGTGCGGTCGCTTCGTCTTCAAAATCTCCGACGGTGCGGTCGCTTCGTCTTCAAAGTCTCCGCAGAAGACGGCGCCGTTTTCAAAGTCCG
GTCTCCGGCGGCGGCTACATCTTTAAAGTCCGGTCTTCGGCGGCGGTTAAATCTTCAAATCTGGTCCCCGGTGGCGACTACATCTTCAAAGTTCGGTCTTTGGCGGCAGC
TACATCTTCAAAGTCCGATCTCCAGCAGCGACTACATCTCCAAGGTCTGGTCTCCGGCGGCTACATCTCCAAGGTCCGGTATCTGGCGGCGGCTACATCTTCAAAGTTCG
GTGTCTGGCGACAGCTATATCTTCAAAGTTCGATCTCCTGGCGGCGACCTCATCTTCAAAGTCCGGTCTCTGGCGGCGGCTTCATTTTCAAAGTCCGGTCTCTGGCGGCG
TCTTCAGCTTCAAAGTCTGGTCTCTGGCGGCGACTTCACCTTCAAAGTCCGGTCTCTCGTGGCGGCTATATCTTCAAACCCGGTCTCAGTAGCGGCTACATCTTCAAAGT
CGGTCTCTGCGCAGCAACTTCAGCTTTAAAGTCTTGTCTCTGGCGGCGGCTTCACCTTCAAACCCTCGAGAAAAGCTACAAGCCGAAGATCTTCAACAAGCTGCAAGCCG
AAGACCTTCTACAAGCTGTAAGCCGAAGATCTTCAACAAGCTACAAGTCGGAGACCTTCAACACGCTACAAGCCGAAGATCTTCAACAAGCTACAAACTACAAGTCGAAG
ATCTTCAACTATATTATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCTATTACCCACAGCTGCTCCAATGAGCTGAGGTCGCAAGAAGATGAAGTAATGACACTGTCGGGGGCATCAACTAACAACAAGTTCTTGATCAAGTTTAACCC
TTTGTTTGATTCTAATTCTGATGTAGTGTCCGTCATGATGACTAAAACAAACACTATGGAAGAAAGAATAACGGGGATGGAAGAACAAATCAACGACTTAATGAAGGCGA
TTAAAGAAAAAGATTCTCAAATCGCATACTTAAAGAGTCAGATTGAGAATCAAGATGTCGTTGAATCAAGTCAAACTCCTAGAAGCAAAGAATATTCTCAACTTGGAAAA
TCTATGACCTTAAAGGAATTCTTCTCTGGAAAATTCCTTCACATAAAAGAAAAGGAAGAAAACTCTGTTGGTGTTTACTACATTGAAGCAGAAGAAGCTGATGACGTAAA
AGAAGTCAAACAAAGGACTTCTGTCTTCGATCGCATTAAGCCTTCAACTACTCGACCTTCAGTCTTCCAAAGGATGAGTATGGCCGCGACGGAAGAAGAAAACCTAGATC
TAACTTCTAGCTCCATTCGAACTTCAGTCTTTCAAAGGCTAAATGTCTCTACTTCAAAGAAACGTCGACCTTCAACATCTGTTTTTTACCGCCTCAAAGTAACAAGTGGT
CAAGATGAAAGCATGATGAACACCTCGAAAGCAGAACTGTTCGATGAGGTGAGCCATAACAAGGTCCAAAGTACCGTCCCTTCACGTATGAAAAGGAAGTTCTACGTTCT
CATAAATACAGAGGGCTCCTTGAAGACTTCGTCGTCGCTTCTTCTCAAAGTTCGAGGACTTCGTCGTCATTTCTTCTCAAAACTCGAAGACTTCGTCGTCGTTTCTTCTC
AAAGCTCGAAGACTCTCGCCGCCGCTTCCTCTCAAAGCTCCGGGTTCCGCTGCCGCTTCTTCTCAAAGCTCAACTCGAAGACTCCGTCGTCGCCTCTTCTCAAAGCTCGA
AGACTTCGTCGTTGCTTCTTCTCAAAGCTCGAGGACTCCAACGTCTTCAAAGACTCTGGCGGTGCTTCCTCTTCAAAGACTCTAGCGGTGCTTCGTCTTCAAAGACTCTG
GAAGTGCGGTCGCTTCGTCTTCAAAGACTCTGGCAGTGCGGTCGCTTCGTCTTCAAAGACTCTGACAGTGCAGTCGCTTTGTCTTCAAAGTCTCTGGCGATGCGGTCGTT
TCGTCTTCAAAGTCTCCGGCGGTGCGGTCGCTTCGTCTTCAAAATCTCCGACGGTGCGGTCGCTTCGTCTTCAAAGTCTCCGCAGAAGACGGCGCCGTTTTCAAAGTCCG
GTCTCCGGCGGCGGCTACATCTTTAAAGTCCGGTCTTCGGCGGCGGTTAAATCTTCAAATCTGGTCCCCGGTGGCGACTACATCTTCAAAGTTCGGTCTTTGGCGGCAGC
TACATCTTCAAAGTCCGATCTCCAGCAGCGACTACATCTCCAAGGTCTGGTCTCCGGCGGCTACATCTCCAAGGTCCGGTATCTGGCGGCGGCTACATCTTCAAAGTTCG
GTGTCTGGCGACAGCTATATCTTCAAAGTTCGATCTCCTGGCGGCGACCTCATCTTCAAAGTCCGGTCTCTGGCGGCGGCTTCATTTTCAAAGTCCGGTCTCTGGCGGCG
TCTTCAGCTTCAAAGTCTGGTCTCTGGCGGCGACTTCACCTTCAAAGTCCGGTCTCTCGTGGCGGCTATATCTTCAAACCCGGTCTCAGTAGCGGCTACATCTTCAAAGT
CGGTCTCTGCGCAGCAACTTCAGCTTTAAAGTCTTGTCTCTGGCGGCGGCTTCACCTTCAAACCCTCGAGAAAAGCTACAAGCCGAAGATCTTCAACAAGCTGCAAGCCG
AAGACCTTCTACAAGCTGTAAGCCGAAGATCTTCAACAAGCTACAAGTCGGAGACCTTCAACACGCTACAAGCCGAAGATCTTCAACAAGCTACAAACTACAAGTCGAAG
ATCTTCAACTATATTATGTAA
Protein sequenceShow/hide protein sequence
MSSITHSCSNELRSQEDEVMTLSGASTNNKFLIKFNPLFDSNSDVVSVMMTKTNTMEERITGMEEQINDLMKAIKEKDSQIAYLKSQIENQDVVESSQTPRSKEYSQLGK
SMTLKEFFSGKFLHIKEKEENSVGVYYIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSIRTSVFQRLNVSTSKKRRPSTSVFYRLKVTSG
QDESMMNTSKAELFDEVSHNKVQSTVPSRMKRKFYVLINTEGSLKTSSSLLLKVRGLRRHFFSKLEDFVVVSSQSSKTLAAASSQSSGFRCRFFSKLNSKTPSSPLLKAR
RLRRCFFSKLEDSNVFKDSGGASSSKTLAVLRLQRLWKCGRFVFKDSGSAVASSSKTLTVQSLCLQSLWRCGRFVFKVSGGAVASSSKSPTVRSLRLQSLRRRRRRFQSP
VSGGGYIFKVRSSAAVKSSNLVPGGDYIFKVRSLAAATSSKSDLQQRLHLQGLVSGGYISKVRYLAAATSSKFGVWRQLYLQSSISWRRPHLQSPVSGGGFIFKVRSLAA
SSASKSGLWRRLHLQSPVSRGGYIFKPGLSSGYIFKVGLCAATSALKSCLWRRLHLQTLEKSYKPKIFNKLQAEDLLQAVSRRSSTSYKSETFNTLQAEDLQQATNYKSK
IFNYIM