CuGenDBv2

Gene ID	Tan0017854
Organism	Trichosanthes anguina (Snake gourd v1)
Description	PHD finger-like domain-containing protein 5B
Genome location	LG08:74933768..74934735
RNA-Seq Expression	Tan0017854
Synteny	Tan0017854
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:1901800 - positive regulation of proteasomal protein catabolic process (biological process) GO:0000502 - proteasome complex (cellular component) GO:0005686 - U2 snRNP (cellular component) GO:0005689 - U12-type spliceosomal complex (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016853 - isomerase activity (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0036402 - proteasome-activating ATPase activity (molecular function)
InterPro domains	IPR005345 - PHF5-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAF4106639.1 hypothetical protein G5714_012629 [Onychostoma macrolepis]

1.6e-23

70.51

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Query:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVEFQMPTTAKSAHSRRKIEMDVQRL
        C    G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QG       +E+ MPTTAKSA SRRK  M   RL
Subjt:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVEFQMPTTAKSAHSRRKIEMDVQRL

MBA0658370.1 hypothetical protein [Gossypium klotzschianum]

2.1e-23

94.44

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Query:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV
        C   PGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV
Subjt:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV

PPD86829.1 hypothetical protein GOBAR_DD16226 [Gossypium barbadense]

2.1e-23

94.44

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Query:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV
        C   PGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV
Subjt:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV

RXH81854.1 hypothetical protein DVH24_036195 [Malus domestica]

1.3e-23

75.71

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Query:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVEFQMPTTAKSAHSRRK
        C   PGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV        K    + K
Subjt:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVEFQMPTTAKSAHSRRK

THU49754.1 hypothetical protein C4D60_Mb06t12860 [Musa balbisiana]

2.1e-23

94.44

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Query:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV
        C   PGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV
Subjt:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV

TrEMBL top hits

e value

%identity

Alignment

A0A1S3VFD8 PHD finger-like domain-containing protein 5B

1.0e-23

94.44

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Query:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV
        C   PGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV
Subjt:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV

A0A1U8I119 PHD finger-like domain-containing protein 5B

1.0e-23

94.44

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Query:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV
        C   PGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV
Subjt:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV

A0A498II63 Uncharacterized protein

6.1e-24

75.71

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Query:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVEFQMPTTAKSAHSRRK
        C   PGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV        K    + K
Subjt:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVEFQMPTTAKSAHSRRK

A0A6J1I5N2 PHD finger-like domain-containing protein 5B

1.0e-23

94.44

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Query:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV
        C   PGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV
Subjt:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV

A0A7J6CH43 Uncharacterized protein

7.9e-24

70.51

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Query:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVEFQMPTTAKSAHSRRKIEMDVQRL
        C    G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QG       +E+ MPTTAKSA SRRK  M   RL
Subjt:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVEFQMPTTAKSAHSRRKIEMDVQRL

SwissProt top hits

e value

%identity

Alignment

P0DI19 PHD finger-like domain-containing protein 5A

3.7e-26

92.59

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Query:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV
        C   PGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGV
Subjt:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV

P83870 PHD finger-like domain-containing protein 5A

3.4e-24

86.79

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Query:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGG
        C    G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG
Subjt:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGG

P83871 PHD finger-like domain-containing protein 5A

3.4e-24

86.79

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Query:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGG
        C    G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG
Subjt:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGG

Q0WMV8 PHD finger-like domain-containing protein 5B

3.7e-26

92.59

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Query:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV
        C   PGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGV
Subjt:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV

Q7RTV0 PHD finger-like domain-containing protein 5A

3.4e-24

86.79

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Query:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGG
        C    G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG
Subjt:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGG

Arabidopsis top hits

e value

%identity

Alignment

AT1G07170.1 PHF5-like protein

2.6e-27

92.59

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Query:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV
        C   PGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGV
Subjt:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV

AT1G07170.2 PHF5-like protein

2.6e-27

92.59

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Query:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV
        C   PGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGV
Subjt:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV

AT1G07170.3 PHF5-like protein

2.6e-27

92.59

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Query:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV
        C   PGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGV
Subjt:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV

AT2G30000.1 PHF5-like protein

2.6e-27

92.59

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Query:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV
        C   PGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGV
Subjt:  CTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGV

Sequences

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CDS sequence

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ATGGGTGGGATTTGTTTATCTTTTTGCATTGCAGCATGCACTTTAAATCCAGGAATTGCAATTGGCCGACTGTGTGAAAAGTGTGACGGGAAGTGTGTAATCTGCGATTC
TTATGTCCGTCCGTGTACGCTTGTTCGAGTTTGTGATGAATGCAATTACGGGTCTTTCCAAGGTCGATGTGTGATCTGTGGAGGAGTGGAATTTCAGATGCCTACTACTG
CAAAGAGTGCACACAGCAGGAGAAAGATAGAGATGGATGTCCAAAGATTGTTAACTTAG

mRNA sequence

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Protein sequence

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MGGICLSFCIAACTLNPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVEFQMPTTAKSAHSRRKIEMDVQRLLT

Tan0017854 (gene) of Snake gourd v1 genome