; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0017907 (gene) of Snake gourd v1 genome

Gene IDTan0017907
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG04:71492507..71493121
RNA-Seq ExpressionTan0017907
SyntenyTan0017907
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]5.5e-5663.59Show/hide
Query:  MASLLDMFGQKCFQVRHDALKHIFNARMKDGVLVRKHVLNMMVHFNMAEMNGTSIDESSQFNFILETLLDSFLQFLSNAVMNKLSYTLTTILNELQTFQS
        M SL +MFGQ  +Q++HDALK+I+NARM +G  VR+HVLNMMVHFN+AEMNG  IDE+SQ +FILE+L +SFLQF SNAVMNK++YTLTT+LNELQTF+S
Subjt:  MASLLDMFGQKCFQVRHDALKHIFNARMKDGVLVRKHVLNMMVHFNMAEMNGTSIDESSQFNFILETLLDSFLQFLSNAVMNKLSYTLTTILNELQTFQS

Query:  LMKVKQQEGEANVA--QRSFHRGSSSGTKSVTSSSSGPKGKKKNMKKVAKGKQADRAGTQKGKKVKDVTEKGMCFYCNVDGHWKRTCPKCLVDKK
        LMK+K Q+GEANVA   R FHRGS+SGTKS+ SSS   K KK   KK  +G +A+ A  +  KK K    KG+CF+CN +GHWKR CPK L +KK
Subjt:  LMKVKQQEGEANVA--QRSFHRGSSSGTKSVTSSSSGPKGKKKNMKKVAKGKQADRAGTQKGKKVKDVTEKGMCFYCNVDGHWKRTCPKCLVDKK

KAA0046415.1 gag/pol protein [Cucumis melo var. makuwa]4.2e-5664.1Show/hide
Query:  MASLLDMFGQKCFQVRHDALKHIFNARMKDGVLVRKHVLNMMVHFNMAEMNGTSIDESSQFNFILETLLDSFLQFLSNAVMNKLSYTLTTILNELQTFQS
        M SL +MFGQ  +Q++HDALK+I+NARM +G  VR+HVLNMMVHFNMAEMNG  IDE+SQ +FILE+L +SFLQF SNAVMNK++YTLTTILNELQTF+S
Subjt:  MASLLDMFGQKCFQVRHDALKHIFNARMKDGVLVRKHVLNMMVHFNMAEMNGTSIDESSQFNFILETLLDSFLQFLSNAVMNKLSYTLTTILNELQTFQS

Query:  LMKVKQQEGEANVA--QRSFHRGSSSGTKSVTSSSSGPKGKKKNMKKVAKGKQADRAGTQKGKKVKDVTEKGMCFYCNVDGHWKRTCPKCLVDKK
        LMK+K Q+GEANVA   R FHRG +SGTKS+ SSS   K KK   KK  +G +A+ A  +  KK K    KG+CF+CN +GHWKR CPK L +KK
Subjt:  LMKVKQQEGEANVA--QRSFHRGSSSGTKSVTSSSSGPKGKKKNMKKVAKGKQADRAGTQKGKKVKDVTEKGMCFYCNVDGHWKRTCPKCLVDKK

KAA0046844.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-5663.59Show/hide
Query:  MASLLDMFGQKCFQVRHDALKHIFNARMKDGVLVRKHVLNMMVHFNMAEMNGTSIDESSQFNFILETLLDSFLQFLSNAVMNKLSYTLTTILNELQTFQS
        M SL +MFGQ  +Q++HDALK+I+NARM DG LVR+HVLNMMV+FN+AEMNG  IDE++Q +FILE+LL+SFLQF SN VMNK++YTLTT+LNELQTF+S
Subjt:  MASLLDMFGQKCFQVRHDALKHIFNARMKDGVLVRKHVLNMMVHFNMAEMNGTSIDESSQFNFILETLLDSFLQFLSNAVMNKLSYTLTTILNELQTFQS

Query:  LMKVKQQEGEANVA--QRSFHRGSSSGTKSVTSSSSGPKGKKKNMKKVAKGKQADRAGTQKGKKVKDVTEKGMCFYCNVDGHWKRTCPKCLVDKK
        LMK+K Q+GEANVA   R FHRGS+SGTK + SSS   K KK   KK  +G +A+ A T+  KK K    KG+CF+CN +GHWKR CPK L +KK
Subjt:  LMKVKQQEGEANVA--QRSFHRGSSSGTKSVTSSSSGPKGKKKNMKKVAKGKQADRAGTQKGKKVKDVTEKGMCFYCNVDGHWKRTCPKCLVDKK

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]5.5e-5663.59Show/hide
Query:  MASLLDMFGQKCFQVRHDALKHIFNARMKDGVLVRKHVLNMMVHFNMAEMNGTSIDESSQFNFILETLLDSFLQFLSNAVMNKLSYTLTTILNELQTFQS
        M SL +MFGQ  +Q++HDALK+I+NARM +G  VR+HVLNMMVHFN+AEMNG  IDE+SQ +FILE+L +SFLQF SNAVMNK++YTLTT+LNELQTF+S
Subjt:  MASLLDMFGQKCFQVRHDALKHIFNARMKDGVLVRKHVLNMMVHFNMAEMNGTSIDESSQFNFILETLLDSFLQFLSNAVMNKLSYTLTTILNELQTFQS

Query:  LMKVKQQEGEANVA--QRSFHRGSSSGTKSVTSSSSGPKGKKKNMKKVAKGKQADRAGTQKGKKVKDVTEKGMCFYCNVDGHWKRTCPKCLVDKK
        LMK+K Q+GEANVA   R FHRGS+SGTKS+ SSS   K KK   KK  +G +A+ A  +  KK K    KG+CF+CN +GHWKR CPK L +KK
Subjt:  LMKVKQQEGEANVA--QRSFHRGSSSGTKSVTSSSSGPKGKKKNMKKVAKGKQADRAGTQKGKKVKDVTEKGMCFYCNVDGHWKRTCPKCLVDKK

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]5.5e-5663.59Show/hide
Query:  MASLLDMFGQKCFQVRHDALKHIFNARMKDGVLVRKHVLNMMVHFNMAEMNGTSIDESSQFNFILETLLDSFLQFLSNAVMNKLSYTLTTILNELQTFQS
        M SL +MFGQ  +Q++HDALK+I+NARM +G  VR+HVLNMMVHFN+AEMNG  IDE+SQ +FILE+L +SFLQF SNAVMNK++YTLTT+LNELQTF+S
Subjt:  MASLLDMFGQKCFQVRHDALKHIFNARMKDGVLVRKHVLNMMVHFNMAEMNGTSIDESSQFNFILETLLDSFLQFLSNAVMNKLSYTLTTILNELQTFQS

Query:  LMKVKQQEGEANVA--QRSFHRGSSSGTKSVTSSSSGPKGKKKNMKKVAKGKQADRAGTQKGKKVKDVTEKGMCFYCNVDGHWKRTCPKCLVDKK
        LMK+K Q+GEANVA   R FHRGS+SGTKS+ SSS   K KK   KK  +G +A+ A  +  KK K    KG+CF+CN +GHWKR CPK L +KK
Subjt:  LMKVKQQEGEANVA--QRSFHRGSSSGTKSVTSSSSGPKGKKKNMKKVAKGKQADRAGTQKGKKVKDVTEKGMCFYCNVDGHWKRTCPKCLVDKK

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein2.7e-5663.59Show/hide
Query:  MASLLDMFGQKCFQVRHDALKHIFNARMKDGVLVRKHVLNMMVHFNMAEMNGTSIDESSQFNFILETLLDSFLQFLSNAVMNKLSYTLTTILNELQTFQS
        M SL +MFGQ  +Q++HDALK+I+NARM +G  VR+HVLNMMVHFN+AEMNG  IDE+SQ +FILE+L +SFLQF SNAVMNK++YTLTT+LNELQTF+S
Subjt:  MASLLDMFGQKCFQVRHDALKHIFNARMKDGVLVRKHVLNMMVHFNMAEMNGTSIDESSQFNFILETLLDSFLQFLSNAVMNKLSYTLTTILNELQTFQS

Query:  LMKVKQQEGEANVA--QRSFHRGSSSGTKSVTSSSSGPKGKKKNMKKVAKGKQADRAGTQKGKKVKDVTEKGMCFYCNVDGHWKRTCPKCLVDKK
        LMK+K Q+GEANVA   R FHRGS+SGTKS+ SSS   K KK   KK  +G +A+ A  +  KK K    KG+CF+CN +GHWKR CPK L +KK
Subjt:  LMKVKQQEGEANVA--QRSFHRGSSSGTKSVTSSSSGPKGKKKNMKKVAKGKQADRAGTQKGKKVKDVTEKGMCFYCNVDGHWKRTCPKCLVDKK

A0A5A7TYF5 Gag/pol protein2.1e-5664.1Show/hide
Query:  MASLLDMFGQKCFQVRHDALKHIFNARMKDGVLVRKHVLNMMVHFNMAEMNGTSIDESSQFNFILETLLDSFLQFLSNAVMNKLSYTLTTILNELQTFQS
        M SL +MFGQ  +Q++HDALK+I+NARM +G  VR+HVLNMMVHFNMAEMNG  IDE+SQ +FILE+L +SFLQF SNAVMNK++YTLTTILNELQTF+S
Subjt:  MASLLDMFGQKCFQVRHDALKHIFNARMKDGVLVRKHVLNMMVHFNMAEMNGTSIDESSQFNFILETLLDSFLQFLSNAVMNKLSYTLTTILNELQTFQS

Query:  LMKVKQQEGEANVA--QRSFHRGSSSGTKSVTSSSSGPKGKKKNMKKVAKGKQADRAGTQKGKKVKDVTEKGMCFYCNVDGHWKRTCPKCLVDKK
        LMK+K Q+GEANVA   R FHRG +SGTKS+ SSS   K KK   KK  +G +A+ A  +  KK K    KG+CF+CN +GHWKR CPK L +KK
Subjt:  LMKVKQQEGEANVA--QRSFHRGSSSGTKSVTSSSSGPKGKKKNMKKVAKGKQADRAGTQKGKKVKDVTEKGMCFYCNVDGHWKRTCPKCLVDKK

A0A5A7V4M1 Gag/pol protein2.7e-5663.59Show/hide
Query:  MASLLDMFGQKCFQVRHDALKHIFNARMKDGVLVRKHVLNMMVHFNMAEMNGTSIDESSQFNFILETLLDSFLQFLSNAVMNKLSYTLTTILNELQTFQS
        M SL +MFGQ  +Q++HDALK+I+NARM +G  VR+HVLNMMVHFN+AEMNG  IDE+SQ +FILE+L +SFLQF SNAVMNK++YTLTT+LNELQTF+S
Subjt:  MASLLDMFGQKCFQVRHDALKHIFNARMKDGVLVRKHVLNMMVHFNMAEMNGTSIDESSQFNFILETLLDSFLQFLSNAVMNKLSYTLTTILNELQTFQS

Query:  LMKVKQQEGEANVA--QRSFHRGSSSGTKSVTSSSSGPKGKKKNMKKVAKGKQADRAGTQKGKKVKDVTEKGMCFYCNVDGHWKRTCPKCLVDKK
        LMK+K Q+GEANVA   R FHRGS+SGTKS+ SSS   K KK   KK  +G +A+ A  +  KK K    KG+CF+CN +GHWKR CPK L +KK
Subjt:  LMKVKQQEGEANVA--QRSFHRGSSSGTKSVTSSSSGPKGKKKNMKKVAKGKQADRAGTQKGKKVKDVTEKGMCFYCNVDGHWKRTCPKCLVDKK

A0A5D3C269 Gag/pol protein7.1e-5763.59Show/hide
Query:  MASLLDMFGQKCFQVRHDALKHIFNARMKDGVLVRKHVLNMMVHFNMAEMNGTSIDESSQFNFILETLLDSFLQFLSNAVMNKLSYTLTTILNELQTFQS
        M SL +MFGQ  +Q++HDALK+I+NARM DG LVR+HVLNMMV+FN+AEMNG  IDE++Q +FILE+LL+SFLQF SN VMNK++YTLTT+LNELQTF+S
Subjt:  MASLLDMFGQKCFQVRHDALKHIFNARMKDGVLVRKHVLNMMVHFNMAEMNGTSIDESSQFNFILETLLDSFLQFLSNAVMNKLSYTLTTILNELQTFQS

Query:  LMKVKQQEGEANVA--QRSFHRGSSSGTKSVTSSSSGPKGKKKNMKKVAKGKQADRAGTQKGKKVKDVTEKGMCFYCNVDGHWKRTCPKCLVDKK
        LMK+K Q+GEANVA   R FHRGS+SGTK + SSS   K KK   KK  +G +A+ A T+  KK K    KG+CF+CN +GHWKR CPK L +KK
Subjt:  LMKVKQQEGEANVA--QRSFHRGSSSGTKSVTSSSSGPKGKKKNMKKVAKGKQADRAGTQKGKKVKDVTEKGMCFYCNVDGHWKRTCPKCLVDKK

A0A5D3CPJ6 Gag/pol protein2.7e-5663.59Show/hide
Query:  MASLLDMFGQKCFQVRHDALKHIFNARMKDGVLVRKHVLNMMVHFNMAEMNGTSIDESSQFNFILETLLDSFLQFLSNAVMNKLSYTLTTILNELQTFQS
        M SL +MFGQ  +Q++HDALK+I+NARM +G  VR+HVLNMMVHFN+AEMNG  IDE+SQ +FILE+L +SFLQF SNAVMNK++YTLTT+LNELQTF+S
Subjt:  MASLLDMFGQKCFQVRHDALKHIFNARMKDGVLVRKHVLNMMVHFNMAEMNGTSIDESSQFNFILETLLDSFLQFLSNAVMNKLSYTLTTILNELQTFQS

Query:  LMKVKQQEGEANVA--QRSFHRGSSSGTKSVTSSSSGPKGKKKNMKKVAKGKQADRAGTQKGKKVKDVTEKGMCFYCNVDGHWKRTCPKCLVDKK
        LMK+K Q+GEANVA   R FHRGS+SGTKS+ SSS   K KK   KK  +G +A+ A  +  KK K    KG+CF+CN +GHWKR CPK L +KK
Subjt:  LMKVKQQEGEANVA--QRSFHRGSSSGTKSVTSSSSGPKGKKKNMKKVAKGKQADRAGTQKGKKVKDVTEKGMCFYCNVDGHWKRTCPKCLVDKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCGTTATTGGACATGTTTGGACAAAAGTGCTTTCAAGTAAGGCATGATGCTCTCAAGCACATTTTCAACGCCAGGATGAAGGATGGGGTGCTTGTCAGGAAACA
CGTTCTCAACATGATGGTCCACTTTAATATGGCGGAGATGAATGGGACATCTATCGATGAGTCGAGCCAGTTTAACTTCATACTGGAAACTCTTCTAGATAGTTTCCTAC
AGTTTCTTAGCAACGCTGTTATGAACAAACTGAGCTACACCCTAACCACCATACTCAACGAGCTACAAACTTTTCAGTCTCTGATGAAAGTCAAGCAACAGGAGGGTGAG
GCAAACGTTGCCCAACGGTCTTTTCACAGGGGTTCGTCCTCGGGGACGAAATCTGTAACCTCGTCTTCTTCAGGCCCGAAAGGGAAGAAGAAGAATATGAAAAAGGTAGC
AAAGGGGAAACAAGCTGACCGTGCTGGCACCCAGAAGGGCAAGAAGGTCAAGGACGTTACAGAAAAAGGAATGTGTTTCTACTGCAATGTAGATGGGCACTGGAAGCGTA
CCTGCCCTAAATGCCTGGTCGACAAGAAGGTAAATGTGATTTGCTTTGCGTCGAAACCTGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCATCGTTATTGGACATGTTTGGACAAAAGTGCTTTCAAGTAAGGCATGATGCTCTCAAGCACATTTTCAACGCCAGGATGAAGGATGGGGTGCTTGTCAGGAAACA
CGTTCTCAACATGATGGTCCACTTTAATATGGCGGAGATGAATGGGACATCTATCGATGAGTCGAGCCAGTTTAACTTCATACTGGAAACTCTTCTAGATAGTTTCCTAC
AGTTTCTTAGCAACGCTGTTATGAACAAACTGAGCTACACCCTAACCACCATACTCAACGAGCTACAAACTTTTCAGTCTCTGATGAAAGTCAAGCAACAGGAGGGTGAG
GCAAACGTTGCCCAACGGTCTTTTCACAGGGGTTCGTCCTCGGGGACGAAATCTGTAACCTCGTCTTCTTCAGGCCCGAAAGGGAAGAAGAAGAATATGAAAAAGGTAGC
AAAGGGGAAACAAGCTGACCGTGCTGGCACCCAGAAGGGCAAGAAGGTCAAGGACGTTACAGAAAAAGGAATGTGTTTCTACTGCAATGTAGATGGGCACTGGAAGCGTA
CCTGCCCTAAATGCCTGGTCGACAAGAAGGTAAATGTGATTTGCTTTGCGTCGAAACCTGTTTAG
Protein sequenceShow/hide protein sequence
MASLLDMFGQKCFQVRHDALKHIFNARMKDGVLVRKHVLNMMVHFNMAEMNGTSIDESSQFNFILETLLDSFLQFLSNAVMNKLSYTLTTILNELQTFQSLMKVKQQEGE
ANVAQRSFHRGSSSGTKSVTSSSSGPKGKKKNMKKVAKGKQADRAGTQKGKKVKDVTEKGMCFYCNVDGHWKRTCPKCLVDKKVNVICFASKPV