CuGenDBv2

Gene ID	Tan0017916
Organism	Trichosanthes anguina (Snake gourd v1)
Description	50S ribosomal protein L19, chloroplastic-like
Genome location	LG05:69194794..69198023
RNA-Seq Expression	Tan0017916
Synteny	Tan0017916
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6573088.1 50S ribosomal protein L19, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-81

85.79

Show/hide

Query:  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFNS--YRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSA
        MQ+FRRINQLVRRQSPDAHFKSIRGYPLNGDA+C CSA MSME SFT  RLFG+PY S N   +RSFSKLGNQY EAF++MGSQMEF+PS K VSSTCSA
Subjt:  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFNS--YRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSA

Query:  FQSPRPYLFQLAEIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV
        FQSPR +LFQLAEIAAPFSSRGIATTSS++SAPQGS  IDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKA+REIPDIKPGYIVQLKV
Subjt:  FQSPRPYLFQLAEIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV

XP_022137703.1 50S ribosomal protein L19, chloroplastic-like [Momordica charantia]

3.8e-78

83.68

Show/hide

Query:  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFNS--YRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSA
        MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDA CSCSAPMSMEN FT+ R FG+PYGS N    RSFSKL NQY EAF NMGSQ+EFV SRKHVSSTCS 
Subjt:  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFNS--YRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSA

Query:  FQSPRPYLFQLAEIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV
        FQ PRP LFQLAE+A PFSSRGIA TSS++S  Q SP I  DITPRIKFKRLDKTSKHIMQILDKEA+EEVKAQREIPDIKPGYIVQLKV
Subjt:  FQSPRPYLFQLAEIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV

XP_022955269.1 54S ribosomal protein subunit img1, mitochondrial-like isoform X1 [Cucurbita moschata]

1.6e-79

84.82

Show/hide

Query:  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFNS--YRSFSKLGNQYSEAF-RNMGSQMEFVPSRKHVSSTCS
        MQ+FRRINQLVRRQSPDAHFKSIRGYPLNGDA+C CSA MSME SFT  RLFG+PY S N   +RSFSKLGNQY EAF ++MGSQMEF+PS K VSSTC 
Subjt:  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFNS--YRSFSKLGNQYSEAF-RNMGSQMEFVPSRKHVSSTCS

Query:  AFQSPRPYLFQLAEIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV
        AFQSP+ +LFQLAEIAAPFSSRGIATTSSM+SAPQGS  IDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKA+REIPDIKPGYIVQLKV
Subjt:  AFQSPRPYLFQLAEIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV

XP_022955270.1 54S ribosomal protein subunit img1, mitochondrial-like isoform X2 [Cucurbita moschata]

6.3e-81

85.26

Show/hide

Query:  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFNS--YRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSA
        MQ+FRRINQLVRRQSPDAHFKSIRGYPLNGDA+C CSA MSME SFT  RLFG+PY S N   +RSFSKLGNQY EAF++MGSQMEF+PS K VSSTC A
Subjt:  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFNS--YRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSA

Query:  FQSPRPYLFQLAEIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV
        FQSP+ +LFQLAEIAAPFSSRGIATTSSM+SAPQGS  IDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKA+REIPDIKPGYIVQLKV
Subjt:  FQSPRPYLFQLAEIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV

XP_023542739.1 54S ribosomal protein subunit img1, mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo]

4.5e-79

84.21

Show/hide

Query:  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFNS--YRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSA
        MQ+FR+INQLVRRQS DAHFKSIRGYPLNGDA+C CSA MSME SFT  R FG+PY S N   +RSFSKLGNQY EAF++MGSQMEF+PS K VSSTC A
Subjt:  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFNS--YRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSA

Query:  FQSPRPYLFQLAEIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV
        FQSPR +LFQLAEIAAPFSSRGIATTSSM+SAPQGS  IDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKA+REIPDIKPGYIVQLKV
Subjt:  FQSPRPYLFQLAEIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LV41 Uncharacterized protein

1.3e-76

81.58

Show/hide

Query:  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSF--NSYRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSA
        MQ FRRINQLVRRQ PDA+FK IRGYPLNGDA CSCSAPMSMENSFT+P LFG  YGS   +  RSFS+ GNQY EAF+NM SQMEFVP RKH SST SA
Subjt:  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSF--NSYRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSA

Query:  FQSPRPYLFQLAEIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV
        FQS RP+ FQLAE AAPFSSRGIATTSSM+SA QGSPA+D+ I PRIKFKRLDKTS+HIMQILDKEAVEEVKA+REIPDIKPGYIVQLKV
Subjt:  FQSPRPYLFQLAEIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV

A0A6J1CB38 50S ribosomal protein L19, chloroplastic-like

1.9e-78

83.68

Show/hide

Query:  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFNS--YRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSA
        MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDA CSCSAPMSMEN FT+ R FG+PYGS N    RSFSKL NQY EAF NMGSQ+EFV SRKHVSSTCS 
Subjt:  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFNS--YRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSA

Query:  FQSPRPYLFQLAEIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV
        FQ PRP LFQLAE+A PFSSRGIA TSS++S  Q SP I  DITPRIKFKRLDKTSKHIMQILDKEA+EEVKAQREIPDIKPGYIVQLKV
Subjt:  FQSPRPYLFQLAEIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV

A0A6J1GUP7 54S ribosomal protein subunit img1, mitochondrial-like isoform X2

3.1e-81

85.26

Show/hide

Query:  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFNS--YRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSA
        MQ+FRRINQLVRRQSPDAHFKSIRGYPLNGDA+C CSA MSME SFT  RLFG+PY S N   +RSFSKLGNQY EAF++MGSQMEF+PS K VSSTC A
Subjt:  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFNS--YRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSA

Query:  FQSPRPYLFQLAEIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV
        FQSP+ +LFQLAEIAAPFSSRGIATTSSM+SAPQGS  IDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKA+REIPDIKPGYIVQLKV
Subjt:  FQSPRPYLFQLAEIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV

A0A6J1GVN3 54S ribosomal protein subunit img1, mitochondrial-like isoform X1

7.5e-80

84.82

Show/hide

Query:  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFNS--YRSFSKLGNQYSEAF-RNMGSQMEFVPSRKHVSSTCS
        MQ+FRRINQLVRRQSPDAHFKSIRGYPLNGDA+C CSA MSME SFT  RLFG+PY S N   +RSFSKLGNQY EAF ++MGSQMEF+PS K VSSTC 
Subjt:  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFNS--YRSFSKLGNQYSEAF-RNMGSQMEFVPSRKHVSSTCS

Query:  AFQSPRPYLFQLAEIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV
        AFQSP+ +LFQLAEIAAPFSSRGIATTSSM+SAPQGS  IDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKA+REIPDIKPGYIVQLKV
Subjt:  AFQSPRPYLFQLAEIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV

A0A6J1K1Y5 50S ribosomal protein L19, chloroplastic-like isoform X2

1.2e-77

82.63

Show/hide

Query:  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFNS--YRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSA
        MQ+F RINQLVRRQS  AHFK IRGYPLNGDA+  CSA MSMENS T  RLF +PYGS N   +RSFSKLGNQY EAF++MGSQMEF+PS K VSS C A
Subjt:  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFNS--YRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSA

Query:  FQSPRPYLFQLAEIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV
        FQSPR +LFQLAEIAAPFSSRGIATTSSM+SAPQGSPAID+DITPRIKFKRLDKTSKHIMQILDKEA+EEVKA+REIPDIKPGYIVQLKV
Subjt:  FQSPRPYLFQLAEIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G24240.1 Ribosomal protein L19 family protein

9.6e-19

68.49

Show/hide

Query:  FSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV
        FSSR  +TT     + QGSP  D  +  RIKFKRLDKT+KHIMQI+DKEAVEEV+  REIP+IKPGYIVQLKV
Subjt:  FSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV

AT4G11630.1 Ribosomal protein L19 family protein

1.2e-18

67.12

Show/hide

Query:  FSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV
        ++SR  +TT    S+ QGSP  D  +  RIKFKRLDKT+KHIMQI+DKEAVEEV++ REIP+IKPGYIVQLKV
Subjt:  FSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV

AT5G11750.1 Ribosomal protein L19 family protein

8.6e-20

68.92

Show/hide

Query:  FSSRGIATT-SSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV
        +S R  +TT  S++S PQGSP  D  +  RIKFKRLDKT+KHIMQI+DKEAVEEV+  REIP+IKPGYIVQLKV
Subjt:  FSSRGIATT-SSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCAAAGTTTTCGCAGAATTAATCAATTGGTACGAAGGCAAAGTCCCGATGCTCATTTCAAGTCGATTCGAGGTTATCCTCTGAATGGGGATGCAGCCTGTAGCTGCTC
GGCGCCAATGTCGATGGAAAATAGTTTTACTGTTCCTCGTCTTTTTGGCTCTCCATATGGGTCTTTCAATAGTTACAGGTCTTTCTCGAAGTTGGGCAATCAATATTCGG
AAGCCTTCAGAAATATGGGATCTCAAATGGAATTTGTGCCTTCGAGAAAGCATGTATCTTCAACCTGCTCAGCATTCCAAAGTCCCAGGCCATATTTATTTCAGTTGGCA
GAAATTGCAGCTCCTTTTTCTAGCAGGGGCATTGCGACCACAAGTTCAATGAAATCAGCTCCACAAGGATCTCCTGCAATTGATACTGATATAACTCCTCGGATCAAATT
TAAGAGGCTTGATAAAACCTCAAAACACATAATGCAGATTTTAGATAAGGAAGCTGTTGAGGAGGTAAAAGCACAGAGAGAAATTCCCGATATAAAGCCAGGCTATATTG
TGCAGCTCAAAGTGTACCTGAGAACAAGCGACGTGTCTCAACATTGA

mRNA sequence

Show/hide mRNA sequence

ATAGCTCTCCCCCTTTGCGATCGGTGAGTATCTTCTTTTCCGGTTGGTTATTCGTTTGCTGGTGATCTGGAATAATCTTCGACATTTCCAACCATCTTGATCACGCCAGA
ATGCAAAGTTTTCGCAGAATTAATCAATTGGTACGAAGGCAAAGTCCCGATGCTCATTTCAAGTCGATTCGAGGTTATCCTCTGAATGGGGATGCAGCCTGTAGCTGCTC
GGCGCCAATGTCGATGGAAAATAGTTTTACTGTTCCTCGTCTTTTTGGCTCTCCATATGGGTCTTTCAATAGTTACAGGTCTTTCTCGAAGTTGGGCAATCAATATTCGG
AAGCCTTCAGAAATATGGGATCTCAAATGGAATTTGTGCCTTCGAGAAAGCATGTATCTTCAACCTGCTCAGCATTCCAAAGTCCCAGGCCATATTTATTTCAGTTGGCA
GAAATTGCAGCTCCTTTTTCTAGCAGGGGCATTGCGACCACAAGTTCAATGAAATCAGCTCCACAAGGATCTCCTGCAATTGATACTGATATAACTCCTCGGATCAAATT
TAAGAGGCTTGATAAAACCTCAAAACACATAATGCAGATTTTAGATAAGGAAGCTGTTGAGGAGGTAAAAGCACAGAGAGAAATTCCCGATATAAAGCCAGGCTATATTG
TGCAGCTCAAAGTGTACCTGAGAACAAGCGACGTGTCTCAACATTGAAAGGCATTGTAATAGCCAGACGGAATGCTGGTCTAAACACAACTTTTAGATTAAGGAGGCTAG
TTGCTGGTGTTGGGGTTGAGTCTCTCTTCCCTCTATACTCACCAAACATAAAAGAGATTAAGGTGTTGGACAAGAAGAAAGTGCGGAGGGCCAAGCTTTACTATCTTAGG
GACAAAATGAACGCGCTTAAGAAGCAATAGCAACCTTTCTGTCCAATGGGATCAGAGGTGTGTCCGTAACATGATGAGTAATCATTTTTGGCAAGAAATCTCACGAGTTT
TCATGATTATCTTATCCTGTTTTAACCATGGAGAACCGACCTGAGAATTTAATGCAGCACTCAGCTTTGCTGAAATAAAAACAAAATGAAGTCGACATTGATTGCCTCTA
GAAGAAATATTCTTTCTTTTAATGATTAGTGGTTCTTGTTCAAGCAAACCATGTCATCATTTTATCTTATTGGTGATCGGTTGCCTTATTTCTTCCCCTTTTTCTGCAAT
ATCAAAAAGTTTACCCATAAAGTGTAATTGGAAACATACAGCTTTCTGATATTAGGCGGTTTGTAATGTGTGTGCCTTATCTTATACATTCCATGGATCAACATTATCAT
CCTTTTGAATGAAGGATCAATTACTCATCATTTACAGCGTTTACATTACTTGCAATCCTTCCCCATGTTGTTCCCTATTGTAATTCTTATTTTGACTATCAATTCGACAT
GAA

Protein sequence

Show/hide protein sequence

MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFNSYRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSAFQSPRPYLFQLA
EIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKVYLRTSDVSQH

Tan0017916 (gene) of Snake gourd v1 genome