; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0017927 (gene) of Snake gourd v1 genome

Gene IDTan0017927
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibonuclease H protein
Genome locationLG04:83963995..83965307
RNA-Seq ExpressionTan0017927
SyntenyTan0017927
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR026960 - Reverse transcriptase zinc-binding domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]3.3e-2834.27Show/hide
Query:  WRIYSDFDCLPMRVNLMGRGVDVPRTCPICGSKAETVNHALFQCQRAKELWAIILPELDLRWMKAKSIQDIWLKLYNKLPMSSFEIICVGSWRLWNDRNH
        WR+++  DC+P   NL+ RG+D    C +CG + ET +HALF+C+RAKE+W I+LP+   +     S+QD  L L   L    F+++ VG W +WNDRN 
Subjt:  WRIYSDFDCLPMRVNLMGRGVDVPRTCPICGSKAETVNHALFQCQRAKELWAIILPELDLRWMKAKSIQDIWLKLYNKLPMSSFEIICVGSWRLWNDRNH

Query:  QCFDRLVQPVIVKAEGLIRYLHDFQRQNV--------SNKETGNTRAGRSVGRDEDIG-MNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTFI
            R +    ++++ ++ Y+ DFQ ++V            + N R   +       G + + VD AC + + RTG+G+  R+  G++LA  S  HD   
Subjt:  QCFDRLVQPVIVKAEGLIRYLHDFQRQNV--------SNKETGNTRAGRSVGRDEDIG-MNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTFI

Query:  NPGCSEALAILDG
         P  +E+LA+ DG
Subjt:  NPGCSEALAILDG

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.8e-2127.49Show/hide
Query:  WRIYSDFDCLPMRVNLMGRGVDVPRTCPICGSKAETVNHALFQCQRAKELWAIILPELD-LRWMKAKSIQDIWLKLYNKLPMSSFEIICVGSWRLWNDRN
        WR  S  + +P   NL+ RG+     C ICG + E++ HA F C+RA+++W  + P L  L      S  ++W  L  +L      +  +  W +WNDRN
Subjt:  WRIYSDFDCLPMRVNLMGRGVDVPRTCPICGSKAETVNHALFQCQRAKELWAIILPELD-LRWMKAKSIQDIWLKLYNKLPMSSFEIICVGSWRLWNDRN

Query:  HQCFDRLVQPVIVKAEGLIRYLHDFQRQNVSNKETGNTRAGRSVGR----DEDIGMNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTFINPGC
             + V PV  K E L  +L    +  +SN         R V +       + + +  D AC  +   T  G  IRD +  L+A  S      ++P  
Subjt:  HQCFDRLVQPVIVKAEGLIRYLHDFQRQNVSNKETGNTRAGRSVGR----DEDIGMNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTFINPGC

Query:  SEALAILDGLQLAERLGYSKVHIFSDSLTNVAMINGVLRTTAEIHNYINDV
        +E   IL+GL+ A    ++ + + SDSL  + +I   + T  +  N++ ++
Subjt:  SEALAILDGLQLAERLGYSKVHIFSDSLTNVAMINGVLRTTAEIHNYINDV

XP_030487412.1 uncharacterized protein LOC115704342 [Cannabis sativa]4.5e-1729.83Show/hide
Query:  DCLPMRVNLMGRGVDVPRTCPICGSKAETVNHALFQCQRAKELWAIILPELDLRWMKAKSIQDIWLK---LYNKLPMSSFEIICVGSWRLWNDRNHQCFD
        DCLP+   L  R +    +C +C  + ET+ HALF+C R K+ W      LD       ++Q+I ++   LY++L +  F  IC+  W LW +RN +   
Subjt:  DCLPMRVNLMGRGVDVPRTCPICGSKAETVNHALFQCQRAKELWAIILPELDLRWMKAKSIQDIWLK---LYNKLPMSSFEIICVGSWRLWNDRNHQCFD

Query:  RLVQPVIVKAEGLIRYLHDFQRQNVSNKETGNTRAGRSVGRDEDIGMNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTFINPGCSEALAILDG
            PV +       YL +F              A R V     + +N   D A D++K  TG G  +R+ +G  +A MS+       P   EALA++  
Subjt:  RLVQPVIVKAEGLIRYLHDFQRQNVSNKETGNTRAGRSVGRDEDIGMNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTFINPGCSEALAILDG

Query:  LQLAERLGYSKVHIFSDSLTNVAMINGVLRTTAEIHNY
        LQ  + L      I SDSL    ++NG+      I N+
Subjt:  LQLAERLGYSKVHIFSDSLTNVAMINGVLRTTAEIHNY

XP_030502555.1 uncharacterized protein LOC115717715 [Cannabis sativa]6.3e-1929.8Show/hide
Query:  WRIYSDFDCLPMRVNLMGRGVDVPRTCPICGSKAETVNHALFQCQRAKELWAIILPELDLRWMKAKSIQDIWLKLYNKLPMSSFEIICVGSWRLWNDRNH
        W++ +    LP+  NL  R V    TC +C    E++ HALF C  AK +W     +LD +        D  + L   L  S  E +    W +W+DRN+
Subjt:  WRIYSDFDCLPMRVNLMGRGVDVPRTCPICGSKAETVNHALFQCQRAKELWAIILPELDLRWMKAKSIQDIWLKLYNKLPMSSFEIICVGSWRLWNDRNH

Query:  QCFDR-LVQPVIVKAEGLIRYLHDFQRQNVSNKETGNT-RAGRSVGR-----DEDIGMNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTFINP
            + L QP+ + ++    YL +F   +V  + T  T R    V R       +  + + VD A D S+ + G+GV IRD +G ++A MS         
Subjt:  QCFDR-LVQPVIVKAEGLIRYLHDFQRQNVSNKETGNT-RAGRSVGR-----DEDIGMNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTFINP

Query:  GCSEALAILDGLQLAERLGYSKVHIFSDSLTNVAMINGVLRTTAEIHNYINDVLF
           EA A+  GLQLAE+L     ++ +D L  V  ING     +  H+ + D+ +
Subjt:  GCSEALAILDGLQLAERLGYSKVHIFSDSLTNVAMINGVLRTTAEIHNYINDVLF

XP_042974792.1 uncharacterized protein LOC122306430 [Carya illinoinensis]4.5e-1729.74Show/hide
Query:  DCLPMRVNLMGRGVDVPRTCPICGSKAETVNHALFQCQRAKELWAIILPELDLRWMKAKSIQDIWLKLYNKLPMSSFEIICVGSWRLWNDRNHQCFD-RL
        +CLP ++NLM R V    TCP+C  + ETV HAL+ C+ A ++WA     +       + + ++W   + KL     EI+ V   R+W  RN   FD +L
Subjt:  DCLPMRVNLMGRGVDVPRTCPICGSKAETVNHALFQCQRAKELWAIILPELDLRWMKAKSIQDIWLKLYNKLPMSSFEIICVGSWRLWNDRNHQCFD-RL

Query:  VQPVIVKAEGLIRYLHDFQRQNVSNKETGNTRAGRSVGRDE--------DIGMNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTFINPGCSEA
        V P  V  +  ++ L DFQ   V  K+T    +   +            DI + V  D A    + R+G+GV IRD +G ++A +        +   +E 
Subjt:  VQPVIVKAEGLIRYLHDFQRQNVSNKETGNTRAGRSVGRDE--------DIGMNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTFINPGCSEA

Query:  LAILDGLQLAERLGYSKVHIFSDSLTNVAMIN
         A+   ++L   L + KV    D+L+ V  +N
Subjt:  LAILDGLQLAERLGYSKVHIFSDSLTNVAMIN

TrEMBL top hitse value%identityAlignment
A0A6J1CTE3 uncharacterized protein LOC1110145781.6e-2834.27Show/hide
Query:  WRIYSDFDCLPMRVNLMGRGVDVPRTCPICGSKAETVNHALFQCQRAKELWAIILPELDLRWMKAKSIQDIWLKLYNKLPMSSFEIICVGSWRLWNDRNH
        WR+++  DC+P   NL+ RG+D    C +CG + ET +HALF+C+RAKE+W I+LP+   +     S+QD  L L   L    F+++ VG W +WNDRN 
Subjt:  WRIYSDFDCLPMRVNLMGRGVDVPRTCPICGSKAETVNHALFQCQRAKELWAIILPELDLRWMKAKSIQDIWLKLYNKLPMSSFEIICVGSWRLWNDRNH

Query:  QCFDRLVQPVIVKAEGLIRYLHDFQRQNV--------SNKETGNTRAGRSVGRDEDIG-MNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTFI
            R +    ++++ ++ Y+ DFQ ++V            + N R   +       G + + VD AC + + RTG+G+  R+  G++LA  S  HD   
Subjt:  QCFDRLVQPVIVKAEGLIRYLHDFQRQNV--------SNKETGNTRAGRSVGRDEDIG-MNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTFI

Query:  NPGCSEALAILDG
         P  +E+LA+ DG
Subjt:  NPGCSEALAILDG

A0A6J1DX30 uncharacterized protein LOC1110248748.6e-2227.49Show/hide
Query:  WRIYSDFDCLPMRVNLMGRGVDVPRTCPICGSKAETVNHALFQCQRAKELWAIILPELD-LRWMKAKSIQDIWLKLYNKLPMSSFEIICVGSWRLWNDRN
        WR  S  + +P   NL+ RG+     C ICG + E++ HA F C+RA+++W  + P L  L      S  ++W  L  +L      +  +  W +WNDRN
Subjt:  WRIYSDFDCLPMRVNLMGRGVDVPRTCPICGSKAETVNHALFQCQRAKELWAIILPELD-LRWMKAKSIQDIWLKLYNKLPMSSFEIICVGSWRLWNDRN

Query:  HQCFDRLVQPVIVKAEGLIRYLHDFQRQNVSNKETGNTRAGRSVGR----DEDIGMNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTFINPGC
             + V PV  K E L  +L    +  +SN         R V +       + + +  D AC  +   T  G  IRD +  L+A  S      ++P  
Subjt:  HQCFDRLVQPVIVKAEGLIRYLHDFQRQNVSNKETGNTRAGRSVGR----DEDIGMNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTFINPGC

Query:  SEALAILDGLQLAERLGYSKVHIFSDSLTNVAMINGVLRTTAEIHNYINDV
        +E   IL+GL+ A    ++ + + SDSL  + +I   + T  +  N++ ++
Subjt:  SEALAILDGLQLAERLGYSKVHIFSDSLTNVAMINGVLRTTAEIHNYINDV

A0A803NGI9 Uncharacterized protein4.9e-1729.52Show/hide
Query:  RTCPICGSKAETVNHALFQCQRAKELWAIILPELDLRWMKAKSIQDIWLKLYNKLPMSSFEIICVGSWRLWNDRNHQCFDRL-VQPVIVKAEGLIRYLHD
        + C +C +  E+V HALF C+ AK++W +    L+   +   S  D  + L      S  E +    W LWNDRN+    +  + P  + A+  + Y  +
Subjt:  RTCPICGSKAETVNHALFQCQRAKELWAIILPELDLRWMKAKSIQDIWLKLYNKLPMSSFEIICVGSWRLWNDRNHQCFDRL-VQPVIVKAEGLIRYLHD

Query:  FQRQNVSNK----ETGNTRAGRSVGRDEDIGMNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTFINPGCSEALAILDGLQLAERLGYSKVHIF
        FQ+Q+ S+K     TG       +    D  + + VD ACD S+ + GVG+ IR+ +G+++A  S      + P   EA A+L G+  A R   S     
Subjt:  FQRQNVSNK----ETGNTRAGRSVGRDEDIGMNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTFINPGCSEALAILDGLQLAERLGYSKVHIF

Query:  SDSLTNVAMINGVLRTTAEIHNYINDV
        SDSL  V  IN +    +   + + D+
Subjt:  SDSLTNVAMINGVLRTTAEIHNYINDV

A0A803PIB6 Uncharacterized protein6.4e-1728.06Show/hide
Query:  WRIYSDFDCLPMRVNLMGRGVDVPRTCPICGSKAETVNHALFQCQRAKELWAIILPELDLRWMKAKSIQDIWLKLYNKLPMSSFEIICVGSWRLWNDRNH
        WR+ +    LP+  NL  R V    TC +C    E++ HALF C  AK +W     +LD          D  L L   L  S  E +    W +W+DRN+
Subjt:  WRIYSDFDCLPMRVNLMGRGVDVPRTCPICGSKAETVNHALFQCQRAKELWAIILPELDLRWMKAKSIQDIWLKLYNKLPMSSFEIICVGSWRLWNDRNH

Query:  QCF-DRLVQPVIV--KAEGLIRYLHDFQRQNVS--NKETGNTRAGRSVGRDEDIGMNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTFINPGC
             +L  P+ +  +AE  +   H  +       +    + R  + V   E   + + VD A D S+ + G+GV IRD  GR++A MS           
Subjt:  QCF-DRLVQPVIV--KAEGLIRYLHDFQRQNVS--NKETGNTRAGRSVGRDEDIGMNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTFINPGC

Query:  SEALAILDGLQLAERLGYSKVHIFSDSLTNVAMINGVLRTTAEIHNYINDVLF
         EA A+  GLQ A++L      + +D L  V  + G     +  H+ + D+ +
Subjt:  SEALAILDGLQLAERLGYSKVHIFSDSLTNVAMINGVLRTTAEIHNYINDVLF

A0A803PKJ2 Uncharacterized protein4.9e-1726.36Show/hide
Query:  WRIYSDFDCLPMRVNLMGRGVDVPRTCPICGSKAETVNHALFQCQRAKELWAIILPELDLRWMKAKSIQDIWLKLYNKLPMSSFEIICVGSWRLWNDRNH
        W++ +    LP+  NL  + V    TC +C    E++ HALF C  AK +W      LD +        D  + L   L  S  E +    W +W+DRN+
Subjt:  WRIYSDFDCLPMRVNLMGRGVDVPRTCPICGSKAETVNHALFQCQRAKELWAIILPELDLRWMKAKSIQDIWLKLYNKLPMSSFEIICVGSWRLWNDRNH

Query:  QCFDR-LVQPVIVKAEGLIRYLHDFQRQNVSNKETGNTRAGRSVGRD---------EDIGMNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTF
            + L QP+ + ++  + YL +F+     + +   T     V  D          +  + + VD A D S+ + G+GV IRD +G ++  MS      
Subjt:  QCFDR-LVQPVIVKAEGLIRYLHDFQRQNVSNKETGNTRAGRSVGRD---------EDIGMNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTF

Query:  INPGCSEALAILDGLQLAERLGYSKVHIFSDSLTNVAMINGVLRTTAEIHNYINDVLF
              EA A+  GLQ A+ L     ++ +D +  V  ING     +  H+ + D+ +
Subjt:  INPGCSEALAILDGLQLAERLGYSKVHIFSDSLTNVAMINGVLRTTAEIHNYINDVLF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.5e-0623.85Show/hide
Query:  TCPICGSKAETVNHALFQCQRAKELWAI--ILPELDLRWMKAKSIQDIW-LKLYNKLPM--SSFEIICVGSWRLWNDRNHQCFDRLVQPVIVKAEGLIRY
        +C  C    ETVNH LF+C  A+ +WAI  I    +  W  +      W L L  ++P       ++    WRLW  RN   F           E L R 
Subjt:  TCPICGSKAETVNHALFQCQRAKELWAI--ILPELDLRWMKAKSIQDIW-LKLYNKLPM--SSFEIICVGSWRLWNDRNHQCFDRLVQPVIVKAEGLIRY

Query:  LHDFQRQNVSNKETGNTRAGRSVGRDEDI--------GMNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTFINPGCSEALAILDGLQLAERLG
        + DF+  + + +E     +G  V R+  +         +    D        R G+G  +R+ +G +L + +       N   +E  A+   +    R  
Subjt:  LHDFQRQNVSNKETGNTRAGRSVGRDEDI--------GMNVFVDVACDESKGRTGVGVAIRDPNGRLLAVMSNVHDTFINPGCSEALAILDGLQLAERLG

Query:  YSKVHIFSDSLTNVAMIN
        Y ++   SD+   V ++N
Subjt:  YSKVHIFSDSLTNVAMIN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGATTCTTATGCACCCGGAGCTGCAAGTTTCAAAGGTACTGAAAGGAAAATATTTTCCCTCTTCGACGCTTTTGAGTTTGGTCCCAATAGAAACTCCAGCCTCTT
CTTCTTACTTTTGGAAGAGTTTTGTCTAGGGACTAGACCTGTTGAAGAAAGGAATGAGATACCAGATGGGCAATGGAGAATCTATTCAGATTTTGATTGTCTCCCTATGA
GGGTTAATCTCATGGGTCGTGGGGTGGATGTCCCTAGGACTTGTCCGATTTGTGGATCCAAGGCAGAAACAGTAAACCATGCTCTATTTCAGTGCCAAAGAGCGAAAGAG
CTATGGGCTATCATTTTGCCTGAGTTAGACTTGAGATGGATGAAAGCAAAATCAATTCAGGACATCTGGTTGAAATTATATAACAAGCTTCCAATGAGCTCTTTTGAAAT
TATCTGTGTAGGCTCTTGGAGATTGTGGAATGACCGAAATCACCAATGTTTTGATCGCCTAGTACAACCTGTAATTGTGAAAGCTGAGGGCTTGATCAGATACTTACATG
ATTTCCAACGCCAGAATGTGAGCAACAAAGAGACGGGCAATACAAGGGCAGGTAGAAGTGTAGGCAGAGATGAGGATATAGGGATGAATGTTTTCGTGGATGTAGCATGT
GATGAGTCTAAAGGGCGAACAGGTGTTGGGGTTGCTATTCGAGATCCAAATGGACGCTTGTTGGCGGTTATGTCCAATGTCCATGATACTTTCATCAATCCGGGTTGCTC
AGAAGCATTGGCCATTCTTGATGGATTGCAGCTTGCTGAGCGTTTAGGATACTCTAAGGTACACATCTTCTCGGACTCATTAACCAATGTGGCTATGATCAATGGGGTGC
TACGAACGACGGCTGAAATCCATAACTACATCAATGATGTTTTATTTTTTCGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGATTCTTATGCACCCGGAGCTGCAAGTTTCAAAGGTACTGAAAGGAAAATATTTTCCCTCTTCGACGCTTTTGAGTTTGGTCCCAATAGAAACTCCAGCCTCTT
CTTCTTACTTTTGGAAGAGTTTTGTCTAGGGACTAGACCTGTTGAAGAAAGGAATGAGATACCAGATGGGCAATGGAGAATCTATTCAGATTTTGATTGTCTCCCTATGA
GGGTTAATCTCATGGGTCGTGGGGTGGATGTCCCTAGGACTTGTCCGATTTGTGGATCCAAGGCAGAAACAGTAAACCATGCTCTATTTCAGTGCCAAAGAGCGAAAGAG
CTATGGGCTATCATTTTGCCTGAGTTAGACTTGAGATGGATGAAAGCAAAATCAATTCAGGACATCTGGTTGAAATTATATAACAAGCTTCCAATGAGCTCTTTTGAAAT
TATCTGTGTAGGCTCTTGGAGATTGTGGAATGACCGAAATCACCAATGTTTTGATCGCCTAGTACAACCTGTAATTGTGAAAGCTGAGGGCTTGATCAGATACTTACATG
ATTTCCAACGCCAGAATGTGAGCAACAAAGAGACGGGCAATACAAGGGCAGGTAGAAGTGTAGGCAGAGATGAGGATATAGGGATGAATGTTTTCGTGGATGTAGCATGT
GATGAGTCTAAAGGGCGAACAGGTGTTGGGGTTGCTATTCGAGATCCAAATGGACGCTTGTTGGCGGTTATGTCCAATGTCCATGATACTTTCATCAATCCGGGTTGCTC
AGAAGCATTGGCCATTCTTGATGGATTGCAGCTTGCTGAGCGTTTAGGATACTCTAAGGTACACATCTTCTCGGACTCATTAACCAATGTGGCTATGATCAATGGGGTGC
TACGAACGACGGCTGAAATCCATAACTACATCAATGATGTTTTATTTTTTCGCTGA
Protein sequenceShow/hide protein sequence
MEDSYAPGAASFKGTERKIFSLFDAFEFGPNRNSSLFFLLLEEFCLGTRPVEERNEIPDGQWRIYSDFDCLPMRVNLMGRGVDVPRTCPICGSKAETVNHALFQCQRAKE
LWAIILPELDLRWMKAKSIQDIWLKLYNKLPMSSFEIICVGSWRLWNDRNHQCFDRLVQPVIVKAEGLIRYLHDFQRQNVSNKETGNTRAGRSVGRDEDIGMNVFVDVAC
DESKGRTGVGVAIRDPNGRLLAVMSNVHDTFINPGCSEALAILDGLQLAERLGYSKVHIFSDSLTNVAMINGVLRTTAEIHNYINDVLFFR