; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0017956 (gene) of Snake gourd v1 genome

Gene IDTan0017956
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG04:35758914..35759120
RNA-Seq ExpressionTan0017956
SyntenyTan0017956
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035138.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-1667.65Show/hide
Query:  MTVTEYEKKFTELSKYASTIVASEIDRCKRFEDGLRTEIRTPVIASSEWVEFSKLVETALRVERSLVD
        ++V EYEKK+TELS+YA  IVASE DRC+RFE GLR EIRTPV A ++W  FS+LVETALRVE+S+ +
Subjt:  MTVTEYEKKFTELSKYASTIVASEIDRCKRFEDGLRTEIRTPVIASSEWVEFSKLVETALRVERSLVD

KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.4e-1766.67Show/hide
Query:  MTVTEYEKKFTELSKYASTIVASEIDRCKRFEDGLRTEIRTPVIASSEWVEFSKLVETALRVERSL
        MTVT+YEKK+TELSKYA+ ++  E++RCKRFE+GL+ EIRTPV   ++W +FSKLVE ALRVE+SL
Subjt:  MTVTEYEKKFTELSKYASTIVASEIDRCKRFEDGLRTEIRTPVIASSEWVEFSKLVETALRVERSL

KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.4e-1769.7Show/hide
Query:  MTVTEYEKKFTELSKYASTIVASEIDRCKRFEDGLRTEIRTPVIASSEWVEFSKLVETALRVERSL
        MTV EYEKK+TELSKYA+ ++  E +RCKRFE+GLR EIRTPV A ++W +FSKLVE ALRVE+SL
Subjt:  MTVTEYEKKFTELSKYASTIVASEIDRCKRFEDGLRTEIRTPVIASSEWVEFSKLVETALRVERSL

KAA0060484.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]8.4e-1766.67Show/hide
Query:  MTVTEYEKKFTELSKYASTIVASEIDRCKRFEDGLRTEIRTPVIASSEWVEFSKLVETALRVERSL
        MT+ EYEKK+TELS YA+ ++  E++RCKRFE+GLR EIRTPV A ++W +FSKLVE ALRVE+SL
Subjt:  MTVTEYEKKFTELSKYASTIVASEIDRCKRFEDGLRTEIRTPVIASSEWVEFSKLVETALRVERSL

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]6.4e-1769.7Show/hide
Query:  MTVTEYEKKFTELSKYASTIVASEIDRCKRFEDGLRTEIRTPVIASSEWVEFSKLVETALRVERSL
        MTV EYEKK+TELSKYA+ ++  E +RCKRFE+GLR EIRTPV A ++W +FSKLVE ALRVE+SL
Subjt:  MTVTEYEKKFTELSKYASTIVASEIDRCKRFEDGLRTEIRTPVIASSEWVEFSKLVETALRVERSL

TrEMBL top hitse value%identityAlignment
A0A5A7SX06 DNA/RNA polymerases superfamily protein5.3e-1767.65Show/hide
Query:  MTVTEYEKKFTELSKYASTIVASEIDRCKRFEDGLRTEIRTPVIASSEWVEFSKLVETALRVERSLVD
        ++V EYEKK+TELS+YA  IVASE DRC+RFE GLR EIRTPV A ++W  FS+LVETALRVE+S+ +
Subjt:  MTVTEYEKKFTELSKYASTIVASEIDRCKRFEDGLRTEIRTPVIASSEWVEFSKLVETALRVERSLVD

A0A5A7T1M0 Reverse transcriptase3.1e-1769.7Show/hide
Query:  MTVTEYEKKFTELSKYASTIVASEIDRCKRFEDGLRTEIRTPVIASSEWVEFSKLVETALRVERSL
        MTV EYEKK+TELSKYA+ ++  E +RCKRFE+GLR EIRTPV A ++W +FSKLVE ALRVE+SL
Subjt:  MTVTEYEKKFTELSKYASTIVASEIDRCKRFEDGLRTEIRTPVIASSEWVEFSKLVETALRVERSL

A0A5A7UZM6 Gag protease polyprotein-like protein4.1e-1766.67Show/hide
Query:  MTVTEYEKKFTELSKYASTIVASEIDRCKRFEDGLRTEIRTPVIASSEWVEFSKLVETALRVERSL
        MT+ EYEKK+TELS YA+ ++  E++RCKRFE+GLR EIRTPV A ++W +FSKLVE ALRVE+SL
Subjt:  MTVTEYEKKFTELSKYASTIVASEIDRCKRFEDGLRTEIRTPVIASSEWVEFSKLVETALRVERSL

A0A5D3BB91 Reverse transcriptase3.1e-1769.7Show/hide
Query:  MTVTEYEKKFTELSKYASTIVASEIDRCKRFEDGLRTEIRTPVIASSEWVEFSKLVETALRVERSL
        MTV EYEKK+TELSKYA+ ++  E +RCKRFE+GLR EIRTPV A ++W +FSKLVE ALRVE+SL
Subjt:  MTVTEYEKKFTELSKYASTIVASEIDRCKRFEDGLRTEIRTPVIASSEWVEFSKLVETALRVERSL

A0A5D3DES5 DNA/RNA polymerases superfamily protein4.1e-1766.67Show/hide
Query:  MTVTEYEKKFTELSKYASTIVASEIDRCKRFEDGLRTEIRTPVIASSEWVEFSKLVETALRVERSL
        MTVT+YEKK+TELSKYA+ ++  E++RCKRFE+GL+ EIRTPV   ++W +FSKLVE ALRVE+SL
Subjt:  MTVTEYEKKFTELSKYASTIVASEIDRCKRFEDGLRTEIRTPVIASSEWVEFSKLVETALRVERSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGTAACAGAATATGAGAAGAAGTTCACAGAGTTATCAAAGTATGCTAGCACTATTGTTGCAAGCGAGATAGATCGATGCAAGAGGTTTGAGGATGGTCTACGAAC
AGAGATCCGAACACCTGTGATAGCAAGTTCTGAGTGGGTTGAGTTCTCCAAGCTTGTGGAGACGGCACTACGGGTGGAACGAAGCCTAGTTGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGTAACAGAATATGAGAAGAAGTTCACAGAGTTATCAAAGTATGCTAGCACTATTGTTGCAAGCGAGATAGATCGATGCAAGAGGTTTGAGGATGGTCTACGAAC
AGAGATCCGAACACCTGTGATAGCAAGTTCTGAGTGGGTTGAGTTCTCCAAGCTTGTGGAGACGGCACTACGGGTGGAACGAAGCCTAGTTGATTAA
Protein sequenceShow/hide protein sequence
MTVTEYEKKFTELSKYASTIVASEIDRCKRFEDGLRTEIRTPVIASSEWVEFSKLVETALRVERSLVD