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Tan0018036 (gene) of Snake gourd v1 genome

Gene IDTan0018036
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG04:38673497..38673823
RNA-Seq ExpressionTan0018036
SyntenyTan0018036
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]4.7e-1448.48Show/hide
Query:  SRTRQPSESVACSARNPLCNTCGKYHWGRCLSGGNVCINCGQGGHFKRECPQLMQEGMVGQRTTSHTVHQQQKTGAARGEGTSSAKQKGQVGRPDNRGR
        +R+R   ESVA  ++   C +CGK H GRC+ G  VC  CG+ GHFKR+CPQL       Q   SHTV +Q +   A GE TS A+QKG VGRP  +G+
Subjt:  SRTRQPSESVACSARNPLCNTCGKYHWGRCLSGGNVCINCGQGGHFKRECPQLMQEGMVGQRTTSHTVHQQQKTGAARGEGTSSAKQKGQVGRPDNRGR

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-1350.51Show/hide
Query:  SRTRQPSESVACSARNPLCNTCGKYHWGRCLSGGNVCINCGQGGHFKRECPQLMQEGMVGQRTTSHTVHQQQKTGAARGEGTSSAKQKGQVGRPDNRGR
        +R R   ESVA  +R   C +C K H G+CL G  VC  CGQ GHFKR+CPQL       Q   SHTV Q +   AAR EGTS A+QK  VGRP  +G+
Subjt:  SRTRQPSESVACSARNPLCNTCGKYHWGRCLSGGNVCINCGQGGHFKRECPQLMQEGMVGQRTTSHTVHQQQKTGAARGEGTSSAKQKGQVGRPDNRGR

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.8e-1348.48Show/hide
Query:  SRTRQPSESVACSARNPLCNTCGKYHWGRCLSGGNVCINCGQGGHFKRECPQLMQEGMVGQRTTSHTVHQQQKTGAARGEGTSSAKQKGQVGRPDNRGR
        +R+R   +SVA  +    C +CGK H G+CL G  VC  CG+ GHFKR+CPQL       QR  SHTV +Q +   A  EGTS A+QKG VGRP  +G+
Subjt:  SRTRQPSESVACSARNPLCNTCGKYHWGRCLSGGNVCINCGQGGHFKRECPQLMQEGMVGQRTTSHTVHQQQKTGAARGEGTSSAKQKGQVGRPDNRGR

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]4.7e-1448.48Show/hide
Query:  SRTRQPSESVACSARNPLCNTCGKYHWGRCLSGGNVCINCGQGGHFKRECPQLMQEGMVGQRTTSHTVHQQQKTGAARGEGTSSAKQKGQVGRPDNRGR
        +R+R   ESVA  ++   C +CGK H GRC+ G  VC  CG+ GHFKR+CPQL       Q   SHTV +Q +   A GE TS A+QKG VGRP  +G+
Subjt:  SRTRQPSESVACSARNPLCNTCGKYHWGRCLSGGNVCINCGQGGHFKRECPQLMQEGMVGQRTTSHTVHQQQKTGAARGEGTSSAKQKGQVGRPDNRGR

WP_217833293.1 CCHC-type zinc finger protein, partial [Synechococcus sp. PCC 7002]7.1e-1855.91Show/hide
Query:  SRTRQPSESVACSARNPLCNTCGKYHWGRCLSGGNVCINCGQGGHFKRECPQLMQEGMVGQRTTSHTVHQQQKTGAARGEGTSSAKQKGQVGR
        SR+ +P ES A S + PLC T GKYHWG+C    N C NCGQ GHFKRECPQLMQE    Q+TTSH + Q Q+      E TS  +QKG  GR
Subjt:  SRTRQPSESVACSARNPLCNTCGKYHWGRCLSGGNVCINCGQGGHFKRECPQLMQEGMVGQRTTSHTVHQQQKTGAARGEGTSSAKQKGQVGR

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase2.3e-1448.48Show/hide
Query:  SRTRQPSESVACSARNPLCNTCGKYHWGRCLSGGNVCINCGQGGHFKRECPQLMQEGMVGQRTTSHTVHQQQKTGAARGEGTSSAKQKGQVGRPDNRGR
        +R+R   ESVA  ++   C +CGK H GRC+ G  VC  CG+ GHFKR+CPQL       Q   SHTV +Q +   A GE TS A+QKG VGRP  +G+
Subjt:  SRTRQPSESVACSARNPLCNTCGKYHWGRCLSGGNVCINCGQGGHFKRECPQLMQEGMVGQRTTSHTVHQQQKTGAARGEGTSSAKQKGQVGRPDNRGR

A0A5A7U9X4 DNA/RNA polymerases superfamily protein6.7e-1450.51Show/hide
Query:  SRTRQPSESVACSARNPLCNTCGKYHWGRCLSGGNVCINCGQGGHFKRECPQLMQEGMVGQRTTSHTVHQQQKTGAARGEGTSSAKQKGQVGRPDNRGR
        +R R   ESVA  +R   C +C K H G+CL G  VC  CGQ GHFKR+CPQL       Q   SHTV Q +   AAR EGTS A+QK  VGRP  +G+
Subjt:  SRTRQPSESVACSARNPLCNTCGKYHWGRCLSGGNVCINCGQGGHFKRECPQLMQEGMVGQRTTSHTVHQQQKTGAARGEGTSSAKQKGQVGRPDNRGR

A0A5A7UAH6 CCHC-type domain-containing protein8.7e-1448.48Show/hide
Query:  SRTRQPSESVACSARNPLCNTCGKYHWGRCLSGGNVCINCGQGGHFKRECPQLMQEGMVGQRTTSHTVHQQQKTGAARGEGTSSAKQKGQVGRPDNRGR
        +R+R   +SVA  +    C +CGK H G+CL G  VC  CG+ GHFKR+CPQL       QR  SHTV +Q +   A  EGTS A+QKG VGRP  +G+
Subjt:  SRTRQPSESVACSARNPLCNTCGKYHWGRCLSGGNVCINCGQGGHFKRECPQLMQEGMVGQRTTSHTVHQQQKTGAARGEGTSSAKQKGQVGRPDNRGR

A0A5A7UZA9 Retrotransposon protein1.9e-1345.45Show/hide
Query:  RTRQPSESVACSARNPLCNTCGKYHWGRCLSGGNVCINCGQGGHFKRECPQLMQEGMVGQRTTSHTVHQQQKTGAARGEGTSSAKQKGQVGRPDNRGRF
        R++   ES+A + R   C +CG+ H G+CL G  VC  CGQ GHFK++CPQL       Q   S TV +Q +      EGTS A+QKG VGRP  +G+F
Subjt:  RTRQPSESVACSARNPLCNTCGKYHWGRCLSGGNVCINCGQGGHFKRECPQLMQEGMVGQRTTSHTVHQQQKTGAARGEGTSSAKQKGQVGRPDNRGRF

A0A5D3BTP3 Reverse transcriptase2.3e-1448.48Show/hide
Query:  SRTRQPSESVACSARNPLCNTCGKYHWGRCLSGGNVCINCGQGGHFKRECPQLMQEGMVGQRTTSHTVHQQQKTGAARGEGTSSAKQKGQVGRPDNRGR
        +R+R   ESVA  ++   C +CGK H GRC+ G  VC  CG+ GHFKR+CPQL       Q   SHTV +Q +   A GE TS A+QKG VGRP  +G+
Subjt:  SRTRQPSESVACSARNPLCNTCGKYHWGRCLSGGNVCINCGQGGHFKRECPQLMQEGMVGQRTTSHTVHQQQKTGAARGEGTSSAKQKGQVGRPDNRGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATCAGCGAGGGACTCCCGTACAAGGCAACCTAGTGAGTCAGTAGCATGTTCAGCAAGGAACCCTTTGTGCAACACTTGTGGAAAGTATCATTGGGGTCGATGTTT
GAGTGGCGGAAATGTATGTATCAACTGTGGGCAAGGTGGTCACTTCAAAAGGGAATGCCCCCAATTAATGCAAGAAGGCATGGTGGGACAGAGAACTACATCGCATACTG
TACACCAGCAGCAAAAAACTGGGGCAGCTCGAGGAGAAGGCACTAGTAGTGCTAAGCAAAAGGGGCAGGTAGGTCGACCCGACAACAGGGGAAGATTTACGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGATCAGCGAGGGACTCCCGTACAAGGCAACCTAGTGAGTCAGTAGCATGTTCAGCAAGGAACCCTTTGTGCAACACTTGTGGAAAGTATCATTGGGGTCGATGTTT
GAGTGGCGGAAATGTATGTATCAACTGTGGGCAAGGTGGTCACTTCAAAAGGGAATGCCCCCAATTAATGCAAGAAGGCATGGTGGGACAGAGAACTACATCGCATACTG
TACACCAGCAGCAAAAAACTGGGGCAGCTCGAGGAGAAGGCACTAGTAGTGCTAAGCAAAAGGGGCAGGTAGGTCGACCCGACAACAGGGGAAGATTTACGCCATGA
Protein sequenceShow/hide protein sequence
MGSARDSRTRQPSESVACSARNPLCNTCGKYHWGRCLSGGNVCINCGQGGHFKRECPQLMQEGMVGQRTTSHTVHQQQKTGAARGEGTSSAKQKGQVGRPDNRGRFTP