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Tan0018041 (gene) of Snake gourd v1 genome

Gene IDTan0018041
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibosomal protein S21 family protein
Genome locationLG04:1150261..1150707
RNA-Seq ExpressionTan0018041
SyntenyTan0018041
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001911 - Ribosomal protein S21


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573697.1 hypothetical protein SDJN03_27584, partial [Cucurbita argyrosperma subsp. sororia]2.3e-4389.91Show/hide
Query:  MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILV
        MNSLARNISCSIRSSIH T SLHC QQQWRGIR KVLNGNLERA+TFLQRKM+SSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAIL+
Subjt:  MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILV

Query:  KKVSGLIIR
        KKV GL ++
Subjt:  KKVSGLIIR

KAG7012773.1 hypothetical protein SDJN02_25526, partial [Cucurbita argyrosperma subsp. argyrosperma]4.4e-4293.2Show/hide
Query:  MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILV
        MNSLARNISCSIRSSIH T SLHC QQQWRGIR KVLNGNLERA+TFLQRKM+SSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAIL+
Subjt:  MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILV

Query:  KKV
        KKV
Subjt:  KKV

XP_022151802.1 uncharacterized protein LOC111019699 [Momordica charantia]1.7e-4187.5Show/hide
Query:  MNSLARNISCSIRSSIHTTNS------LHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
        MNSLARN+SC IR SIHTT+S      LHCQQQQWRGIR KVLNGNLERAL FLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
Subjt:  MNSLARNISCSIRSSIHTTNS------LHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK

Query:  LKAILVKKVSGL
        LKAIL+KKV GL
Subjt:  LKAILVKKVSGL

XP_022945130.1 uncharacterized protein LOC111449463 [Cucurbita moschata]3.0e-4392.45Show/hide
Query:  MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILV
        MNSLARNISCSIRSSIH T SLHC QQQWRGIR KVLNGNLERA+TFLQRKM+SSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAIL+
Subjt:  MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILV

Query:  KKVSGL
        KKV GL
Subjt:  KKVSGL

XP_022966846.1 uncharacterized protein LOC111466431 [Cucurbita maxima]1.0e-4393.4Show/hide
Query:  MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILV
        MNSLARNISCSIRSSIH T SLHC QQQWRGIR KVLNGNLERA+TFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAIL+
Subjt:  MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILV

Query:  KKVSGL
        KKV GL
Subjt:  KKVSGL

TrEMBL top hitse value%identityAlignment
A0A6J1DEG8 uncharacterized protein LOC1110196998.1e-4287.5Show/hide
Query:  MNSLARNISCSIRSSIHTTNS------LHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
        MNSLARN+SC IR SIHTT+S      LHCQQQQWRGIR KVLNGNLERAL FLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
Subjt:  MNSLARNISCSIRSSIHTTNS------LHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK

Query:  LKAILVKKVSGL
        LKAIL+KKV GL
Subjt:  LKAILVKKVSGL

A0A6J1F3V2 uncharacterized protein LOC1114419291.5e-4087.96Show/hide
Query:  MNSLARNISCSIRSSIHTT--NSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
        MNSL+RN+SCSIRSS+HT     LH QQQQWRGIR KVLNGNLERALTFLQRKM+SSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
Subjt:  MNSLARNISCSIRSSIHTT--NSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI

Query:  LVKKVSGL
        L+KKV GL
Subjt:  LVKKVSGL

A0A6J1G018 uncharacterized protein LOC1114494631.5e-4392.45Show/hide
Query:  MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILV
        MNSLARNISCSIRSSIH T SLHC QQQWRGIR KVLNGNLERA+TFLQRKM+SSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAIL+
Subjt:  MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILV

Query:  KKVSGL
        KKV GL
Subjt:  KKVSGL

A0A6J1HQF3 uncharacterized protein LOC1114664315.0e-4493.4Show/hide
Query:  MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILV
        MNSLARNISCSIRSSIH T SLHC QQQWRGIR KVLNGNLERA+TFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAIL+
Subjt:  MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILV

Query:  KKVSGL
        KKV GL
Subjt:  KKVSGL

A0A6J1J5L6 uncharacterized protein LOC1114815076.8e-4188.89Show/hide
Query:  MNSLARNISCSIRSSIHTT--NSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
        MNSL+RN+SCSIRSS+HT     LH QQQQWRGIR KVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
Subjt:  MNSLARNISCSIRSSIHTT--NSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI

Query:  LVKKVSGL
        L+KKV GL
Subjt:  LVKKVSGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G26360.1 Ribosomal protein S21 family protein6.1e-2661.32Show/hide
Query:  MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILV
        MN++A+ +     + + T  SL+ Q QQ RGIR KV + +L++ALT LQ+KMQSSG+ERLIK  QTHHIKNSEK+VLARKNLER+I+S D ARKL++IL+
Subjt:  MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILV

Query:  KKVSGL
        KKV GL
Subjt:  KKVSGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTCGTTGGCGCGAAACATATCATGCTCCATTAGGTCTTCGATTCATACCACTAACTCGCTACATTGCCAGCAGCAGCAATGGAGGGGGATCCGAGCGAAGGTACT
GAACGGGAATCTAGAGCGGGCACTGACATTTTTGCAAAGGAAGATGCAATCGAGCGGAATCGAGCGGCTGATTAAGCGCGAACAGACTCATCACATCAAGAATTCGGAAA
AGCGAGTTTTGGCCCGAAAGAATTTGGAGCGCAAAATTCGATCGCAGGATCTTGCTCGCAAGCTTAAAGCCATTCTCGTAAAGAAAGTCAGTGGCCTGATTATACGGATC
TTCTGGTTTTGTTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGAACTCGTTGGCGCGAAACATATCATGCTCCATTAGGTCTTCGATTCATACCACTAACTCGCTACATTGCCAGCAGCAGCAATGGAGGGGGATCCGAGCGAAGGTACT
GAACGGGAATCTAGAGCGGGCACTGACATTTTTGCAAAGGAAGATGCAATCGAGCGGAATCGAGCGGCTGATTAAGCGCGAACAGACTCATCACATCAAGAATTCGGAAA
AGCGAGTTTTGGCCCGAAAGAATTTGGAGCGCAAAATTCGATCGCAGGATCTTGCTCGCAAGCTTAAAGCCATTCTCGTAAAGAAAGTCAGTGGCCTGATTATACGGATC
TTCTGGTTTTGTTTATAA
Protein sequenceShow/hide protein sequence
MNSLARNISCSIRSSIHTTNSLHCQQQQWRGIRAKVLNGNLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILVKKVSGLIIRI
FWFCL