CuGenDBv2

Gene ID	Tan0018065
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG01:23405892..23406233
RNA-Seq Expression	Tan0018065
Synteny	Tan0018065
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025358.1 gag/pol protein [Cucumis melo var. makuwa]

1.9e-45

81.42

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Query:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG
        MKDLGEAQ+VLGIQI+R+RKNK LALSQ++YIDKMLVRY MQN KKG LPFRHG+HLS +QC KTPQEVE +RRIPYAS V SLM+VMLCTRPDICYAVG
Subjt:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG

Query:  IVSRYQSNSGYGH
        I SRYQSNSG  H
Subjt:  IVSRYQSNSGYGH

KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]

8.4e-46

82.3

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Query:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG
        MKDLGEAQ+VLGIQI+R+RKNKTLALSQ++YIDK+LVRY MQN KKG LPFRHG+HLS +Q PKTPQEVE MRRIPYAS V SLM+VMLCTRPDICYAVG
Subjt:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG

Query:  IVSRYQSNSGYGH
        IVSRYQSN G  H
Subjt:  IVSRYQSNSGYGH

KAA0043583.1 putative Integrase core domain [Cucumis melo var. makuwa]

1.7e-46

84.07

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Query:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG
        MKDLGEAQ+VLGIQI+R+RKNKTLALSQ++YIDKMLVRY MQN KKG LPFRHG+HLS +QCPKTPQEVE MRRIPYASVV SLM+VML TRPDICYAVG
Subjt:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG

Query:  IVSRYQSNSGYGH
        IVSRYQSN G  H
Subjt:  IVSRYQSNSGYGH

KAA0059556.1 gag/pol protein [Cucumis melo var. makuwa]

1.4e-45

81.42

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Query:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG
        MKD+GEAQ+VLGIQI+R+RKNKTLALSQ++YIDKMLVRY MQN KKG LPFRHG+HLS +QCPKTPQEVE MRRIPYAS V SLM+ MLCTRPDICYAVG
Subjt:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG

Query:  IVSRYQSNSGYGH
        IVSRYQSN    H
Subjt:  IVSRYQSNSGYGH

KAA0062886.1 gag/pol protein [Cucumis melo var. makuwa]

3.8e-46

82.3

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Query:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG
        MKDLGEAQ+VLGIQI+R+RKNKTLALSQ++YIDKMLVRY MQN KKG LPFRHG+HLS +QCPKTPQEVE MRRIPYAS V SLM+ MLCTRPDICY VG
Subjt:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG

Query:  IVSRYQSNSGYGH
        IVSRYQSN G  H
Subjt:  IVSRYQSNSGYGH

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SGT6 Gag/pol protein

9.0e-46

81.42

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Query:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG
        MKDLGEAQ+VLGIQI+R+RKNK LALSQ++YIDKMLVRY MQN KKG LPFRHG+HLS +QC KTPQEVE +RRIPYAS V SLM+VMLCTRPDICYAVG
Subjt:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG

Query:  IVSRYQSNSGYGH
        I SRYQSNSG  H
Subjt:  IVSRYQSNSGYGH

A0A5A7TJH9 Putative Integrase core domain

8.2e-47

84.07

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Query:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG
        MKDLGEAQ+VLGIQI+R+RKNKTLALSQ++YIDKMLVRY MQN KKG LPFRHG+HLS +QCPKTPQEVE MRRIPYASVV SLM+VML TRPDICYAVG
Subjt:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG

Query:  IVSRYQSNSGYGH
        IVSRYQSN G  H
Subjt:  IVSRYQSNSGYGH

A0A5A7TKM4 Gag/pol protein

4.1e-46

82.3

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Query:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG
        MKDLGEAQ+VLGIQI+R+RKNKTLALSQ++YIDK+LVRY MQN KKG LPFRHG+HLS +Q PKTPQEVE MRRIPYAS V SLM+VMLCTRPDICYAVG
Subjt:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG

Query:  IVSRYQSNSGYGH
        IVSRYQSN G  H
Subjt:  IVSRYQSNSGYGH

A0A5A7UZF3 Gag/pol protein

6.9e-46

81.42

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Query:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG
        MKD+GEAQ+VLGIQI+R+RKNKTLALSQ++YIDKMLVRY MQN KKG LPFRHG+HLS +QCPKTPQEVE MRRIPYAS V SLM+ MLCTRPDICYAVG
Subjt:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG

Query:  IVSRYQSNSGYGH
        IVSRYQSN    H
Subjt:  IVSRYQSNSGYGH

A0A5A7V8W0 Gag/pol protein

1.8e-46

82.3

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Query:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG
        MKDLGEAQ+VLGIQI+R+RKNKTLALSQ++YIDKMLVRY MQN KKG LPFRHG+HLS +QCPKTPQEVE MRRIPYAS V SLM+ MLCTRPDICY VG
Subjt:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG

Query:  IVSRYQSNSGYGH
        IVSRYQSN G  H
Subjt:  IVSRYQSNSGYGH

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

8.5e-09

33.63

Show/hide

Query:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHL----STKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDIC
        M DL E +  +GI+I    +   + LSQS+Y+ K+L ++ M+N    + P    I+     S + C             P  S++  LM++MLCTRPD+ 
Subjt:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHL----STKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDIC

Query:  YAVGIVSRYQSNS
         AV I+SRY S +
Subjt:  YAVGIVSRYQSNS

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.0e-25

48.67

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Query:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG
        MKDLG AQ +LG++I+R R ++ L LSQ  YI+++L R+ M+N K  + P    + LS K CP T +E   M ++PY+S V SLM+ M+CTRPDI +AVG
Subjt:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG

Query:  IVSRYQSNSGYGH
        +VSR+  N G  H
Subjt:  IVSRYQSNSGYGH

P25600 Putative transposon Ty5-1 protein YCL074W

2.8e-04

31.43

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Query:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG
        MKDLG+    LG+ I     N  + LS   YI K     ++  FK    P  +   L     P            PY S+V  L+F     RPDI Y V 
Subjt:  MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVG

Query:  IVSRY
        ++SR+
Subjt:  IVSRY

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAAGATTTGGGAGAGGCTCAGTTTGTTCTTGGAATCCAAATTCTTCGGAATCGCAAGAACAAAACGCTAGCACTGTCTCAGTCATCTTATATCGACAAGATGTTGGT
TAGATATAAGATGCAGAATTTCAAGAAGGGTGCATTACCTTTCAGGCATGGAATTCATTTGTCTACGAAACAATGTCCTAAGACACCTCAAGAAGTTGAGGGTATGAGAC
GCATTCCCTATGCATCTGTTGTCAGTAGTCTGATGTTTGTCATGCTATGTACTCGACCCGACATATGCTATGCAGTGGGAATAGTCAGCAGGTATCAGTCTAATTCAGGA
TATGGTCACTAG

mRNA sequence

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Protein sequence

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MKDLGEAQFVLGIQILRNRKNKTLALSQSSYIDKMLVRYKMQNFKKGALPFRHGIHLSTKQCPKTPQEVEGMRRIPYASVVSSLMFVMLCTRPDICYAVGIVSRYQSNSG
YGH

Tan0018065 (gene) of Snake gourd v1 genome