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Tan0018075 (gene) of Snake gourd v1 genome

Gene IDTan0018075
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionBEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A .
Genome locationLG01:11527378..11531717
RNA-Seq ExpressionTan0018075
SyntenyTan0018075
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7015189.1 hypothetical protein SDJN02_22822 [Cucurbita argyrosperma subsp. argyrosperma]1.8e-5581.94Show/hide
Query:  MEQPQADISTIIATESQIPATSPNSTIPEMPTCSDIEDCTKSKPSLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGR
        MEQ  +D S+ I    QIPATSPNS IPE PTCS +EDCT+ + SLS TEIFKAI+VVEKDSLAIAESFTSLF+SLR  LSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQPQADISTIIATESQIPATSPNSTIPEMPTCSDIEDCTKSKPSLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLYPLYFIPS
        LQESVLDAATKGNRYINSSLRLNQEMKG+DNLAAQLYP YF+PS
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLYPLYFIPS

XP_022136587.1 uncharacterized protein LOC111008257 isoform X1 [Momordica charantia]9.1e-5283.33Show/hide
Query:  MEQPQADISTIIATESQIPATSPNSTIPEMPTCSDIEDCTKSKPSLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGR
        M+Q +AD ST I  +SQIP TSPNST+ EMPTCS +ED TKSKP L QTEIFKAIEVVEKDSLAIAESFTSLF+SLR ALSE + NSIDHMHCF+DAAG 
Subjt:  MEQPQADISTIIATESQIPATSPNSTIPEMPTCSDIEDCTKSKPSLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLYP
        LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLYP
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLYP

XP_022931514.1 uncharacterized protein LOC111437668 [Cucurbita moschata]4.5e-5182.35Show/hide
Query:  MEQPQADISTIIATESQIPATSPNSTIPEMPTCSDIEDCTKSKPSLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGR
        MEQ  +D S+ I    QIPATSPNS IPE PTCS +EDCT+ + SLS TEIFKAI+VVEKDSLAIAESFTSLF+SLR  LSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQPQADISTIIATESQIPATSPNSTIPEMPTCSDIEDCTKSKPSLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL
        LQESVLDAATKGNRYINSSLRLNQEMKG+DNLAAQL
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL

XP_022984532.1 uncharacterized protein LOC111482798 [Cucurbita maxima]4.5e-5182.35Show/hide
Query:  MEQPQADISTIIATESQIPATSPNSTIPEMPTCSDIEDCTKSKPSLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGR
        MEQ  +D S+ I   SQIPATSPNS IPE PTCS +EDCT+ + SLS TEIFKAI+VVEK+SLAIAESFTSLF+SLR  LSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQPQADISTIIATESQIPATSPNSTIPEMPTCSDIEDCTKSKPSLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL
        LQESVLDAATKGNRYINSSLRLNQEMKG+DNLAAQL
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL

XP_023553161.1 uncharacterized protein LOC111810650 [Cucurbita pepo subsp. pepo]2.0e-5183.09Show/hide
Query:  MEQPQADISTIIATESQIPATSPNSTIPEMPTCSDIEDCTKSKPSLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGR
        MEQ  +D ST I    QIPATSPNS IPE PTCS +EDCT+ + SLS TEIFKAI+VVEKDSLAIAESFTSLF+SLR  LSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQPQADISTIIATESQIPATSPNSTIPEMPTCSDIEDCTKSKPSLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL
        LQESVLDAATKGNRYINSSLRLNQEMKG+DNLAAQL
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL

TrEMBL top hitse value%identityAlignment
A0A1S3BTP0 uncharacterized protein LOC1034931561.7e-4882.48Show/hide
Query:  MEQPQADISTI-IATESQIPATSPNSTIPEMPTCSDIEDCTKSKPSLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAG
        MEQ  AD ST  I TE QIPATSPNST     T SD+EDCTK++ SLSQT+I +AIEVVEKDSLAIAESFTSLF+SLR  LSEVTSNSIDHMHCFNDAAG
Subjt:  MEQPQADISTI-IATESQIPATSPNSTIPEMPTCSDIEDCTKSKPSLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAG

Query:  RLQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL
        RLQESVLDAATKGNRYINSSLRLNQEMKG+DNLAAQL
Subjt:  RLQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL

A0A6J1C5W4 uncharacterized protein LOC111008257 isoform X14.4e-5283.33Show/hide
Query:  MEQPQADISTIIATESQIPATSPNSTIPEMPTCSDIEDCTKSKPSLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGR
        M+Q +AD ST I  +SQIP TSPNST+ EMPTCS +ED TKSKP L QTEIFKAIEVVEKDSLAIAESFTSLF+SLR ALSE + NSIDHMHCF+DAAG 
Subjt:  MEQPQADISTIIATESQIPATSPNSTIPEMPTCSDIEDCTKSKPSLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLYP
        LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLYP
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQLYP

A0A6J1C7Z8 uncharacterized protein LOC111008257 isoform X21.8e-5083.09Show/hide
Query:  MEQPQADISTIIATESQIPATSPNSTIPEMPTCSDIEDCTKSKPSLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGR
        M+Q +AD ST I  +SQIP TSPNST+ EMPTCS +ED TKSKP L QTEIFKAIEVVEKDSLAIAESFTSLF+SLR ALSE + NSIDHMHCF+DAAG 
Subjt:  MEQPQADISTIIATESQIPATSPNSTIPEMPTCSDIEDCTKSKPSLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL
        LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL

A0A6J1EUG1 uncharacterized protein LOC1114376682.2e-5182.35Show/hide
Query:  MEQPQADISTIIATESQIPATSPNSTIPEMPTCSDIEDCTKSKPSLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGR
        MEQ  +D S+ I    QIPATSPNS IPE PTCS +EDCT+ + SLS TEIFKAI+VVEKDSLAIAESFTSLF+SLR  LSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQPQADISTIIATESQIPATSPNSTIPEMPTCSDIEDCTKSKPSLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL
        LQESVLDAATKGNRYINSSLRLNQEMKG+DNLAAQL
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL

A0A6J1J2E9 uncharacterized protein LOC1114827982.2e-5182.35Show/hide
Query:  MEQPQADISTIIATESQIPATSPNSTIPEMPTCSDIEDCTKSKPSLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGR
        MEQ  +D S+ I   SQIPATSPNS IPE PTCS +EDCT+ + SLS TEIFKAI+VVEK+SLAIAESFTSLF+SLR  LSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQPQADISTIIATESQIPATSPNSTIPEMPTCSDIEDCTKSKPSLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL
        LQESVLDAATKGNRYINSSLRLNQEMKG+DNLAAQL
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G23330.1 BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A (TAIR:AT4G11420.1)8.5e-2469.88Show/hide
Query:  KSKP-SLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGRLQESVLDAATKGNRYINSSLRL
        +S+P SL+Q EI K +  VEKDS AIAESF+SLF SLR  LSE T +S+DHM CF +AAGRLQE+ LDAATKGNRYINS LRL
Subjt:  KSKP-SLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGRLQESVLDAATKGNRYINSSLRL

AT4G23330.2 unknown protein3.6e-3069.07Show/hide
Query:  KSKP-SLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGRLQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL
        +S+P SL+Q EI K +  VEKDS AIAESF+SLF SLR  LSE T +S+DHM CF +AAGRLQE+ LDAATKGNRYINS LRLN+E+KG++NLAA+L
Subjt:  KSKP-SLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGRLQESVLDAATKGNRYINSSLRLNQEMKGIDNLAAQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCAACCTCAGGCGGATATTTCGACGATCATAGCAACTGAAAGTCAGATTCCGGCTACATCCCCAAATTCGACCATTCCCGAGATGCCCACTTGTTCTGACATTGA
AGATTGCACCAAATCCAAACCTTCGTTGAGCCAGACCGAGATTTTCAAAGCCATTGAAGTCGTCGAGAAAGACTCTCTCGCCATCGCTGAGAGCTTCACCTCTCTCTTTT
CTTCCCTCCGTTTGGCTCTCTCCGAGGTCACCAGCAACTCTATTGATCATATGCATTGCTTCAATGATGCTGCAGGCCGCCTTCAAGAATCCGTGCTTGATGCGGCAACG
AAGGGTAATCGATACATTAATTCTTCCTTGAGATTGAATCAGGAAATGAAAGGCATTGACAATCTAGCTGCTCAGCTGTATCCTTTATATTTCATTCCTTCTTTTTACTT
TAGAATTGAGAACTTGAACAAAGTCCTCTGCATTATCATTACCCAGTTCCTTAATTCTTGCTTAGAAAGGTTTTGA
mRNA sequenceShow/hide mRNA sequence
CTTAGTTTATTCGAGACTTGCTTCTCGCTCATACAGGAATCTAGAGCCCCTTCATCACTCCCACTTCTAAGAATTCGTGAAAGTTCGCTTCCGTGGGTGTGTTGCATTTC
AATGGCCTGATTCTAATGGGGAGTCGAAACCCAATTTTCGAGTTGCAGAGAATTCGAAAACAGTCAGCGTTGCACTAGGTTCAAAATCATCGGGAAATGGAGCAACCTCA
GGCGGATATTTCGACGATCATAGCAACTGAAAGTCAGATTCCGGCTACATCCCCAAATTCGACCATTCCCGAGATGCCCACTTGTTCTGACATTGAAGATTGCACCAAAT
CCAAACCTTCGTTGAGCCAGACCGAGATTTTCAAAGCCATTGAAGTCGTCGAGAAAGACTCTCTCGCCATCGCTGAGAGCTTCACCTCTCTCTTTTCTTCCCTCCGTTTG
GCTCTCTCCGAGGTCACCAGCAACTCTATTGATCATATGCATTGCTTCAATGATGCTGCAGGCCGCCTTCAAGAATCCGTGCTTGATGCGGCAACGAAGGGTAATCGATA
CATTAATTCTTCCTTGAGATTGAATCAGGAAATGAAAGGCATTGACAATCTAGCTGCTCAGCTGTATCCTTTATATTTCATTCCTTCTTTTTACTTTAGAATTGAGAACT
TGAACAAAGTCCTCTGCATTATCATTACCCAGTTCCTTAATTCTTGCTTAGAAAGGTTTTGAGGAAGAACGTGGATGCTTTAGACTTGGCTGTGAACAAGCTCCTCAATT
TTCCATGAGCTCTATTCGGTTCTGTTCGGTTCGGTCTGGTCGTAGTTCTTGCAAGGTCAAGGATTATTGTCTCATTAGGCTGCAAGAATACAGTTCATCGAGAGAAAAAA
AAAAAAAATCATTCCATAGTTTCCTTAGCATTTTACTCCGGGAAGCATCTAATTGCGTGTCGTGTTGGGTTCTTTGGTGTATTTATAGGGATGAATAAATTTTCTTGATC
GTTTGATAATACTGCTGGATTGATTCATCAGTGTCTCTTTTCTTAAGAGGAGGAGGCTATTCAGCTTTCCAGAG
Protein sequenceShow/hide protein sequence
MEQPQADISTIIATESQIPATSPNSTIPEMPTCSDIEDCTKSKPSLSQTEIFKAIEVVEKDSLAIAESFTSLFSSLRLALSEVTSNSIDHMHCFNDAAGRLQESVLDAAT
KGNRYINSSLRLNQEMKGIDNLAAQLYPLYFIPSFYFRIENLNKVLCIIITQFLNSCLERF