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Tan0018091 (gene) of Snake gourd v1 genome

Gene IDTan0018091
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG09:39014778..39026863
RNA-Seq ExpressionTan0018091
SyntenyTan0018091
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052217.1 hypothetical protein E6C27_scaffold207G00280 [Cucumis melo var. makuwa]6.5e-0542.05Show/hide
Query:  MTKTLSPRLYSTVCTQ-----------------VEIELLVPDILPYVTFLQIIRYVYQVKQVQQELLRGNNVCWLHAIFRAKLAGGTG
        +T+ LS RLY TVCTQ                 VEIELLVPD LP            + K     ++RG++VCWLH +FRAK  GG G
Subjt:  MTKTLSPRLYSTVCTQ-----------------VEIELLVPDILPYVTFLQIIRYVYQVKQVQQELLRGNNVCWLHAIFRAKLAGGTG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]3.4e-0642.42Show/hide
Query:  MTKTLSPRLYSTVCTQ-----------------VEIELLVPDILP---------YVTFLQI-IRYVYQVKQVQQELLRGNNVCWLHAIFRAKLAGGTGG
        MT+ LSPRLY TVCTQ                 VEIEL VPD LP           T+L++ + +V+        ++R ++VCWLHA+FRAK AGG GG
Subjt:  MTKTLSPRLYSTVCTQ-----------------VEIELLVPDILP---------YVTFLQI-IRYVYQVKQVQQELLRGNNVCWLHAIFRAKLAGGTGG

TYK00848.1 gag/pol protein [Cucumis melo var. makuwa]3.4e-0644.94Show/hide
Query:  MTKTLSPRLYSTVCTQ-----------------VEIELLVPDILPYVTFLQIIRYVYQVKQVQQELLRGNNVCWLHAIFRAKLAGGTGG
        MT+ LS RLY  VCTQ                 VEIELLVPD LP           ++       ++RG++VCWLHAIFRAK AGG GG
Subjt:  MTKTLSPRLYSTVCTQ-----------------VEIELLVPDILPYVTFLQIIRYVYQVKQVQQELLRGNNVCWLHAIFRAKLAGGTGG

TYK01784.1 hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa]6.5e-0542.05Show/hide
Query:  MTKTLSPRLYSTVCTQ-----------------VEIELLVPDILPYVTFLQIIRYVYQVKQVQQELLRGNNVCWLHAIFRAKLAGGTG
        +T+ LS RLY TVCTQ                 VEIELLVPD LP            + K     ++RG++VCWLH +FRAK  GG G
Subjt:  MTKTLSPRLYSTVCTQ-----------------VEIELLVPDILPYVTFLQIIRYVYQVKQVQQELLRGNNVCWLHAIFRAKLAGGTG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]3.4e-0642.42Show/hide
Query:  MTKTLSPRLYSTVCTQ-----------------VEIELLVPDILP---------YVTFLQI-IRYVYQVKQVQQELLRGNNVCWLHAIFRAKLAGGTGG
        MT+ LSPRLY TVCTQ                 VEIEL VPD LP           T+L++ + +V+        ++R ++VCWLHA+FRAK AGG GG
Subjt:  MTKTLSPRLYSTVCTQ-----------------VEIELLVPDILP---------YVTFLQI-IRYVYQVKQVQQELLRGNNVCWLHAIFRAKLAGGTGG

TrEMBL top hitse value%identityAlignment
A0A5A7UCL6 Reverse transcriptase domain-containing protein3.1e-0542.05Show/hide
Query:  MTKTLSPRLYSTVCTQ-----------------VEIELLVPDILPYVTFLQIIRYVYQVKQVQQELLRGNNVCWLHAIFRAKLAGGTG
        +T+ LS RLY TVCTQ                 VEIELLVPD LP            + K     ++RG++VCWLH +FRAK  GG G
Subjt:  MTKTLSPRLYSTVCTQ-----------------VEIELLVPDILPYVTFLQIIRYVYQVKQVQQELLRGNNVCWLHAIFRAKLAGGTG

A0A5A7VMG9 Reverse transcriptase1.7e-0642.42Show/hide
Query:  MTKTLSPRLYSTVCTQ-----------------VEIELLVPDILP---------YVTFLQI-IRYVYQVKQVQQELLRGNNVCWLHAIFRAKLAGGTGG
        MT+ LSPRLY TVCTQ                 VEIEL VPD LP           T+L++ + +V+        ++R ++VCWLHA+FRAK AGG GG
Subjt:  MTKTLSPRLYSTVCTQ-----------------VEIELLVPDILP---------YVTFLQI-IRYVYQVKQVQQELLRGNNVCWLHAIFRAKLAGGTGG

A0A5D3BP54 Gag/pol protein1.7e-0644.94Show/hide
Query:  MTKTLSPRLYSTVCTQ-----------------VEIELLVPDILPYVTFLQIIRYVYQVKQVQQELLRGNNVCWLHAIFRAKLAGGTGG
        MT+ LS RLY  VCTQ                 VEIELLVPD LP           ++       ++RG++VCWLHAIFRAK AGG GG
Subjt:  MTKTLSPRLYSTVCTQ-----------------VEIELLVPDILPYVTFLQIIRYVYQVKQVQQELLRGNNVCWLHAIFRAKLAGGTGG

A0A5D3BRJ2 Reverse transcriptase domain-containing protein3.1e-0542.05Show/hide
Query:  MTKTLSPRLYSTVCTQ-----------------VEIELLVPDILPYVTFLQIIRYVYQVKQVQQELLRGNNVCWLHAIFRAKLAGGTG
        +T+ LS RLY TVCTQ                 VEIELLVPD LP            + K     ++RG++VCWLH +FRAK  GG G
Subjt:  MTKTLSPRLYSTVCTQ-----------------VEIELLVPDILPYVTFLQIIRYVYQVKQVQQELLRGNNVCWLHAIFRAKLAGGTG

A0A5D3DX39 Reverse transcriptase1.7e-0642.42Show/hide
Query:  MTKTLSPRLYSTVCTQ-----------------VEIELLVPDILP---------YVTFLQI-IRYVYQVKQVQQELLRGNNVCWLHAIFRAKLAGGTGG
        MT+ LSPRLY TVCTQ                 VEIEL VPD LP           T+L++ + +V+        ++R ++VCWLHA+FRAK AGG GG
Subjt:  MTKTLSPRLYSTVCTQ-----------------VEIELLVPDILP---------YVTFLQI-IRYVYQVKQVQQELLRGNNVCWLHAIFRAKLAGGTGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAAGACATTGAGCCCGAGGCTATATAGTACCGTGTGCACACAGGTAGAGATCGAGCTCCTAGTACCTGACATCCTGCCATATGTCACATTTTTACAGATCATTAG
ATATGTTTATCAGGTAAAGCAGGTTCAACAGGAATTGTTAAGAGGTAACAATGTCTGTTGGCTTCATGCCATCTTCCGAGCTAAGTTAGCAGGTGGTACGGGAGGGGTTC
GCGGTGTTCCGATCCCTATGGTCAGACCCTCCGAAGGGGTGGTTGCTCCCAGGGCAACACACAAGCGGACCATAGGCATCTCACAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTAAGACATTGAGCCCGAGGCTATATAGTACCGTGTGCACACAGGTAGAGATCGAGCTCCTAGTACCTGACATCCTGCCATATGTCACATTTTTACAGATCATTAG
ATATGTTTATCAGGTAAAGCAGGTTCAACAGGAATTGTTAAGAGGTAACAATGTCTGTTGGCTTCATGCCATCTTCCGAGCTAAGTTAGCAGGTGGTACGGGAGGGGTTC
GCGGTGTTCCGATCCCTATGGTCAGACCCTCCGAAGGGGTGGTTGCTCCCAGGGCAACACACAAGCGGACCATAGGCATCTCACAGTGA
Protein sequenceShow/hide protein sequence
MTKTLSPRLYSTVCTQVEIELLVPDILPYVTFLQIIRYVYQVKQVQQELLRGNNVCWLHAIFRAKLAGGTGGVRGVPIPMVRPSEGVVAPRATHKRTIGISQ