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Tan0018115 (gene) of Snake gourd v1 genome

Gene IDTan0018115
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG07:40729259..40729643
RNA-Seq ExpressionTan0018115
SyntenyTan0018115
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.8e-1240.62Show/hide
Query:  WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSV-PENSIPLIVESDSWEAIQLINGNRKDHIE
        W+PP+   WKLNTNA+W + +N+GG+GWI+RD  G +++A  + I     IT +E+  I + L ++  E+  P+ +ESDS EAI L++   +D  E
Subjt:  WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSV-PENSIPLIVESDSWEAIQLINGNRKDHIE

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]1.5e-1037.74Show/hide
Query:  WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSV-PENSIPLIVESDSWEAIQLINGNRKDHIEAKDF
        W+PP+   WKLNT+A+W + +N+ G+GWI+RD  G +++ G + I     IT +E+  I + L ++  E+  P+ +ESDS EAI L+      H   K  
Subjt:  WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSV-PENSIPLIVESDSWEAIQLINGNRKDHIEAKDF

Query:  AKIFPF
         K+F F
Subjt:  AKIFPF

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]1.5e-1037.74Show/hide
Query:  WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSV-PENSIPLIVESDSWEAIQLINGNRKDHIEAKDF
        W+PP+   WKLNT+A+W + +N+ G+GWI+RD  G +++ G + I     IT +E+  I + L ++  E+  P+ +ESDS EAI L+      H   K  
Subjt:  WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSV-PENSIPLIVESDSWEAIQLINGNRKDHIEAKDF

Query:  AKIFPF
         K+F F
Subjt:  AKIFPF

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.2e-1038.3Show/hide
Query:  WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSVPENSI--PLIVESDSWEAIQLINGNRKD
        W+PP M  W LN +ASW  +++ GG+GWI+R W G IV AG++F+     + ++E   I++ L ++    +  PL +E+DS E   L+N  R+D
Subjt:  WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSVPENSI--PLIVESDSWEAIQLINGNRKD

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.2e-1036.54Show/hide
Query:  WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSV---------PENSIPLIVESDSWEAIQLINGNRK
        W+PP+   WKLNT+A+W + +N+GG+GWI+RD  G +++A  + I     IT +E+  I + L ++          E+  P+ +ESDS EAI L++   +
Subjt:  WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSV---------PENSIPLIVESDSWEAIQLINGNRK

Query:  DHIE
        D  E
Subjt:  DHIE

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.4e-1240.62Show/hide
Query:  WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSV-PENSIPLIVESDSWEAIQLINGNRKDHIE
        W+PP+   WKLNTNA+W + +N+GG+GWI+RD  G +++A  + I     IT +E+  I + L ++  E+  P+ +ESDS EAI L++   +D  E
Subjt:  WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSV-PENSIPLIVESDSWEAIQLINGNRKDHIE

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X17.5e-1137.74Show/hide
Query:  WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSV-PENSIPLIVESDSWEAIQLINGNRKDHIEAKDF
        W+PP+   WKLNT+A+W + +N+ G+GWI+RD  G +++ G + I     IT +E+  I + L ++  E+  P+ +ESDS EAI L+      H   K  
Subjt:  WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSV-PENSIPLIVESDSWEAIQLINGNRKDHIEAKDF

Query:  AKIFPF
         K+F F
Subjt:  AKIFPF

A0A6J1DNV9 uncharacterized protein LOC1110224035.7e-1138.3Show/hide
Query:  WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSVPENSI--PLIVESDSWEAIQLINGNRKD
        W+PP M  W LN +ASW  +++ GG+GWI+R W G IV AG++F+     + ++E   I++ L ++    +  PL +E+DS E   L+N  R+D
Subjt:  WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSVPENSI--PLIVESDSWEAIQLINGNRKD

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X27.5e-1137.74Show/hide
Query:  WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSV-PENSIPLIVESDSWEAIQLINGNRKDHIEAKDF
        W+PP+   WKLNT+A+W + +N+ G+GWI+RD  G +++ G + I     IT +E+  I + L ++  E+  P+ +ESDS EAI L+      H   K  
Subjt:  WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSV-PENSIPLIVESDSWEAIQLINGNRKDHIEAKDF

Query:  AKIFPF
         K+F F
Subjt:  AKIFPF

A0A6J1DSV1 uncharacterized protein LOC1110236085.7e-1136.54Show/hide
Query:  WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSV---------PENSIPLIVESDSWEAIQLINGNRK
        W+PP+   WKLNT+A+W + +N+GG+GWI+RD  G +++A  + I     IT +E+  I + L ++          E+  P+ +ESDS EAI L++   +
Subjt:  WQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSV---------PENSIPLIVESDSWEAIQLINGNRK

Query:  DHIE
        D  E
Subjt:  DHIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAGGGTTGGCAACCGCCGAGCATGGGCGGATGGAAATTAAACACAAATGCATCCTGGGATTCAACTTCAAACAGTGGAGGTATGGGTTGGATTATGCGAGACTG
GACAGGGAGCATAGTTCGAGCAGGTCATCAGTTTATCACTCACAATTGGCCTATTACGATTATGGAGTTATTTGGTATTATCAAATGGTTGGATTCAGTTCCGGAGAATT
CTATCCCTCTTATTGTTGAATCTGACTCTTGGGAGGCAATTCAGCTAATCAATGGAAATCGGAAGGATCACATTGAAGCCAAAGACTTTGCTAAGATATTTCCTTTTGCT
TTCAACGTCGGACTACAAATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGAGGGTTGGCAACCGCCGAGCATGGGCGGATGGAAATTAAACACAAATGCATCCTGGGATTCAACTTCAAACAGTGGAGGTATGGGTTGGATTATGCGAGACTG
GACAGGGAGCATAGTTCGAGCAGGTCATCAGTTTATCACTCACAATTGGCCTATTACGATTATGGAGTTATTTGGTATTATCAAATGGTTGGATTCAGTTCCGGAGAATT
CTATCCCTCTTATTGTTGAATCTGACTCTTGGGAGGCAATTCAGCTAATCAATGGAAATCGGAAGGATCACATTGAAGCCAAAGACTTTGCTAAGATATTTCCTTTTGCT
TTCAACGTCGGACTACAAATTTAG
Protein sequenceShow/hide protein sequence
MVEGWQPPSMGGWKLNTNASWDSTSNSGGMGWIMRDWTGSIVRAGHQFITHNWPITIMELFGIIKWLDSVPENSIPLIVESDSWEAIQLINGNRKDHIEAKDFAKIFPFA
FNVGLQI