CuGenDBv2

Gene ID	Tan0018129
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerase subunit alpha
Genome location	Contig00034:102239..103237
RNA-Seq Expression	Tan0018129
Synteny	Tan0018129
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR011260 - RNA polymerase, alpha subunit, C-terminal IPR011262 - DNA-directed RNA polymerase, insert domain IPR011263 - DNA-directed RNA polymerase, RpoA/D/Rpb3-type IPR011773 - DNA-directed RNA polymerase, alpha subunit IPR036603 - RNA polymerase, RBP11-like subunit IPR036643 - DNA-directed RNA polymerase, insert domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QJD26502.1 RNA polymerase alpha subunit [Trichosanthes kirilowii var. japonica]

4.9e-168

92.47

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHI  NLTEP+    ELKIERNRGY                AIFMPVRNANHSIHSYVNGNEKQEIL
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL

Query:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL
        F+EIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIA KYIFIDQLELPPRIYNCLKRSNIHTLFDLL
Subjt:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL

Query:  NNSPDELMKMKYFRIEDVKHILDILEMEKNFA
        NNSPDELMKMKYFRIEDVKHILDILEMEKNFA
Subjt:  NNSPDELMKMKYFRIEDVKHILDILEMEKNFA

QJD26676.1 RNA polymerase alpha subunit [Trichosanthes rosthornii]

5.4e-167

91.87

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHI  NLTEP+    ELKIERNRGY                AIFMPVRNANHSIHSYVNGNEKQEIL
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL

Query:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL
        F+EIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFH+KLAKLRKKKKEIA  YIFIDQLELPPRIYNCLKRSNIHTLFDLL
Subjt:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL

Query:  NNSPDELMKMKYFRIEDVKHILDILEMEKNFA
        NNSPDELMKMKYFRIEDVKHILDILEMEKNFA
Subjt:  NNSPDELMKMKYFRIEDVKHILDILEMEKNFA

YP_009752613.1 RNA polymerase subunit alpha [Trichosanthes homophylla]

4.1e-167

91.87

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHI  NLTEP+    ELKIERNRGY                AIFMPVRNANHSIHSYVNGNEKQEIL
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL

Query:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL
        F+EIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFH KNNKQKVTLPLFTFH+KLAKLRKKKKEIA KYIFIDQLELPPRIYNCLKRSNIHTLFDLL
Subjt:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL

Query:  NNSPDELMKMKYFRIEDVKHILDILEMEKNFA
        NNSPDELMKMKYFRIEDVKHILDILEMEKNFA
Subjt:  NNSPDELMKMKYFRIEDVKHILDILEMEKNFA

YP_009753206.1 RNA polymerase subunit alpha [Trichosanthes truncata]

2.4e-167

92.17

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHI  NLTEP+    ELKIERNRGY                AIFMPVRNANHSIHSYVNGNEKQEIL
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL

Query:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL
        FLEIWTNGS TPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFH+KLAKLRKKKKEIA KYIFIDQLELPPRIYNCLKRSNIHTLFDLL
Subjt:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL

Query:  NNSPDELMKMKYFRIEDVKHILDILEMEKNFA
        NNSPDELMKMKYFRIEDVKHILDILEMEKNFA
Subjt:  NNSPDELMKMKYFRIEDVKHILDILEMEKNFA

YP_009753906.1 RNA polymerase subunit alpha [Trichosanthes lobata]

5.8e-169

93.07

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHI  NLTEP+    ELKIERNRGY                AIFMPVRNANHSIHSYVNGNEKQEIL
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL

Query:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL
        FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL
Subjt:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL

Query:  NNSPDELMKMKYFRIEDVKHILDILEMEKNFA
        NNSPDELMKMKYFRIEDVKHILDILEMEKNFA
Subjt:  NNSPDELMKMKYFRIEDVKHILDILEMEKNFA

TrEMBL top hits

e value

%identity

Alignment

A0A6H0ETS7 DNA-directed RNA polymerase subunit alpha

2.0e-167

91.87

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHI  NLTEP+    ELKIERNRGY                AIFMPVRNANHSIHSYVNGNEKQEIL
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL

Query:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL
        F+EIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFH KNNKQKVTLPLFTFH+KLAKLRKKKKEIA KYIFIDQLELPPRIYNCLKRSNIHTLFDLL
Subjt:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL

Query:  NNSPDELMKMKYFRIEDVKHILDILEMEKNFA
        NNSPDELMKMKYFRIEDVKHILDILEMEKNFA
Subjt:  NNSPDELMKMKYFRIEDVKHILDILEMEKNFA

A0A6H0EU05 DNA-directed RNA polymerase subunit alpha

2.0e-167

91.87

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHI  NLTEP+    ELKIERNRGY                AIFMPVRNANHSIHSYVNGNEKQEIL
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL

Query:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL
        F+EIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFH KNNKQKVTLPLFTFH+KLAKLRKKKKEIA KYIFIDQLELPPRIYNCLKRSNIHTLFDLL
Subjt:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL

Query:  NNSPDELMKMKYFRIEDVKHILDILEMEKNFA
        NNSPDELMKMKYFRIEDVKHILDILEMEKNFA
Subjt:  NNSPDELMKMKYFRIEDVKHILDILEMEKNFA

A0A6H0EVC4 DNA-directed RNA polymerase subunit alpha

1.2e-167

92.17

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHI  NLTEP+    ELKIERNRGY                AIFMPVRNANHSIHSYVNGNEKQEIL
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL

Query:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL
        FLEIWTNGS TPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFH+KLAKLRKKKKEIA KYIFIDQLELPPRIYNCLKRSNIHTLFDLL
Subjt:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL

Query:  NNSPDELMKMKYFRIEDVKHILDILEMEKNFA
        NNSPDELMKMKYFRIEDVKHILDILEMEKNFA
Subjt:  NNSPDELMKMKYFRIEDVKHILDILEMEKNFA

A0A6H0EW05 DNA-directed RNA polymerase subunit alpha

2.8e-169

93.07

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHI  NLTEP+    ELKIERNRGY                AIFMPVRNANHSIHSYVNGNEKQEIL
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL

Query:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL
        FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL
Subjt:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL

Query:  NNSPDELMKMKYFRIEDVKHILDILEMEKNFA
        NNSPDELMKMKYFRIEDVKHILDILEMEKNFA
Subjt:  NNSPDELMKMKYFRIEDVKHILDILEMEKNFA

A0A6M3RU20 DNA-directed RNA polymerase subunit alpha

2.4e-168

92.47

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHI  NLTEP+    ELKIERNRGY                AIFMPVRNANHSIHSYVNGNEKQEIL
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL

Query:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL
        F+EIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIA KYIFIDQLELPPRIYNCLKRSNIHTLFDLL
Subjt:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL

Query:  NNSPDELMKMKYFRIEDVKHILDILEMEKNFA
        NNSPDELMKMKYFRIEDVKHILDILEMEKNFA
Subjt:  NNSPDELMKMKYFRIEDVKHILDILEMEKNFA

SwissProt top hits

e value

%identity

Alignment

A4GYU3 DNA-directed RNA polymerase subunit alpha

1.8e-149

80.06

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREK+R+STRTL+WKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGTCITRAKS+KIPHE+STI GIQES+HEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGY---------------HAIFMPVRNANHSIHSYVNGNEKQEIL
        YGT DASICVKGPGCVTAQDIILPPSVEI+DNTQHI  +L EP+     L+IERNRGY                A+FMPVRNANHS+HSY NGNEKQEIL
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGY---------------HAIFMPVRNANHSIHSYVNGNEKQEIL

Query:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL
        FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHL+ N+ K+TLPLF FHD+LAKLRK +KEIA K IFIDQLEL P+IYNCLKRSNIHTL+DLL
Subjt:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL

Query:  NNSPDELMKMKYFRIEDVKHILDILEMEKNF
         NS ++LMK+++FRIEDVKHI  IL++EK+F
Subjt:  NNSPDELMKMKYFRIEDVKHILDILEMEKNF

Q14FC5 DNA-directed RNA polymerase subunit alpha

2.6e-148

79.46

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREK+R+STRTL+WKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGTCITRAKS+KIPHE+STI GIQES+HEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGY---------------HAIFMPVRNANHSIHSYVNGNEKQEIL
        YGT +ASICVKGPGCVTAQDIILPPSVEI+DNTQHI  +L EP+     L+IERNRGY                A+FMPVRNANHS+HSY NGNEKQEIL
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGY---------------HAIFMPVRNANHSIHSYVNGNEKQEIL

Query:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL
        FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEE+FHL+ N+ K+TLPLF FHD+LAKLRK +KEIA K IFIDQLEL P+IYNCLKRSNIHTL+DLL
Subjt:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL

Query:  NNSPDELMKMKYFRIEDVKHILDILEMEKNF
         NS ++LMK+++FRIEDVKHI  IL++EK+F
Subjt:  NNSPDELMKMKYFRIEDVKHILDILEMEKNF

Q2PMQ3 DNA-directed RNA polymerase subunit alpha

4.3e-151

82.04

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTL+WKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMR+ LLGEIEGTCITR KSEKIPHEYSTI+GI+ESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL
        YGTRDASIC KGPG VTAQDIILPPSVEIVDNTQHI  N+TEP+    ELKIERNRGY                A FMPVRN NHSIHSYVNGNEKQEIL
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL

Query:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLA--KLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFD
        FLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+NF+L+NN+ KVTLPLFTFHD LA  KLRKKKKEIA K IFIDQLELPPRIYNCLKRSNIHTL +
Subjt:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLA--KLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFD

Query:  LLNNSPDELMKMKYFRIEDVKHILDILEMEKNFA
        LLNNS ++L+K+++FR+EDVK+ILD LE+EK+FA
Subjt:  LLNNSPDELMKMKYFRIEDVKHILDILEMEKNFA

Q49KW6 DNA-directed RNA polymerase subunit alpha

6.0e-153

83.69

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREK+RVSTRTL+WKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGTCITRAK EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL
        YGTR+ASICVKGPGCVTAQDIILP SVEIVDNTQ+I  NLTEP+     L+IERNRGYH               A+FMPVRNANHSIHSY NGNEKQEIL
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL

Query:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL
        FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEN HL+NN+ KVTLP FTFHD+LAKLRK KKEIA K IFIDQ ELPPR YNCLKR NIHTLFDLL
Subjt:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLL

Query:  NNSPDELMKMKYFRIEDVKHILDILEMEKNF
        N S ++LMKM+YFRIEDVK ILD LE+EK F
Subjt:  NNSPDELMKMKYFRIEDVKHILDILEMEKNF

Q4VZK3 DNA-directed RNA polymerase subunit alpha

1.1e-165

89.82

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHI  NL EP+    ELKIERNRGYH               AIFMPVRN NHSIHSYVNGNEKQEIL
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYH---------------AIFMPVRNANHSIHSYVNGNEKQEIL

Query:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE--ENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFD
        FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE  ENFHLKNNK+KVTLPLFTFH+KLAKLRKKKKEIA KYIFIDQ ELPPRIYNCLKR NIHTLFD
Subjt:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE--ENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFD

Query:  LLNNSPDELMKMKYFRIEDVKHILDILEMEKNFA
        LLNNSPDELMK+K+FRIEDVKHILDILEMEKNFA
Subjt:  LLNNSPDELMKMKYFRIEDVKHILDILEMEKNFA

Arabidopsis top hits

e value

%identity

Alignment

ATCG00740.1 RNA polymerase subunit alpha

1.1e-141

76.52

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREK++VSTRTL+WKCVES+ DSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGTCITRAKSE IPH+YS I GIQESVHEILMNL EIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGY---------------HAIFMPVRNANHSIHSYVNGNEKQEIL
        YGTR+A ICV+GPG +TA+DIILPP+VEI+DNTQHI   LTEP+    ELKIERNRGY                A+FMPV NANHSIHSY NGNEKQEIL
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGY---------------HAIFMPVRNANHSIHSYVNGNEKQEIL

Query:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKK--KEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFD
        FLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE F+L+NN+ +VTLP F FH++L  LRKKK  KE+AF+YIFIDQLELPPRIYNCLK+SNIHTL D
Subjt:  FLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLKNNKQKVTLPLFTFHDKLAKLRKKK--KEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFD

Query:  LLNNSPDELMKMKYFRIEDVKHILDILE
        LLNNS ++L+K+++F +EDVK ILDILE
Subjt:  LLNNSPDELMKMKYFRIEDVKHILDILE

Sequences

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CDS sequence

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ATGGTTCGAGAGAAAATAAGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCGTCTTTATTATGGCCGCTTTATTCTGTCTCCACT
TATGAAGGGTCAAGCCGATACTATAGGCATTGCGATGCGAAAAGCTTTGCTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATACCACATGAAT
ACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGTGATGCGTCTATTTGTGTC
AAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCTGTGGAAATCGTTGATAATACACAGCATATATATAATAACCTAACGGAGCCATTAATTTGTGT
TTGTGAATTAAAGATCGAGAGGAATCGCGGATATCATGCTATATTCATGCCTGTTCGAAATGCGAATCATAGTATTCATTCTTATGTAAATGGGAATGAAAAACAAGAGA
TACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACGCCTAAAGAAGCACTTCATGAAGCCTCTCGGAATTTGATTGATTTATTTATTCCCTTTTTACATGCGGAAGAA
GAAAACTTCCATTTAAAAAACAATAAACAAAAAGTTACTTTACCCCTTTTTACTTTTCATGATAAATTGGCTAAACTAAGGAAAAAGAAAAAAGAAATAGCATTCAAATA
TATTTTTATTGACCAATTAGAATTGCCTCCTAGGATCTATAATTGCCTCAAAAGGTCCAATATACATACATTATTTGACCTTTTGAATAATAGTCCAGACGAACTTATGA
AAATGAAATATTTTCGCATAGAAGACGTAAAACATATATTAGACATTCTCGAAATGGAAAAGAATTTTGCATAA

mRNA sequence

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Protein sequence

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MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICV
KGPGCVTAQDIILPPSVEIVDNTQHIYNNLTEPLICVCELKIERNRGYHAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE
ENFHLKNNKQKVTLPLFTFHDKLAKLRKKKKEIAFKYIFIDQLELPPRIYNCLKRSNIHTLFDLLNNSPDELMKMKYFRIEDVKHILDILEMEKNFA

Tan0018129 (gene) of Snake gourd v1 genome