CuGenDBv2

Gene ID	Tan0018132
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RING-type E3 ubiquitin transferase
Genome location	LG02:5002921..5007656
RNA-Seq Expression	Tan0018132
Synteny	Tan0018132
Gene Ontology terms	GO:0005635 - nuclear envelope (cellular component) GO:0005739 - mitochondrion (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYK23276.1 uncharacterized protein E5676_scaffold142G003320 [Cucumis melo var. makuwa]

6.2e-71

88.89

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Query:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVDA---KQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD
        MEAMVKKYQQRFRKFKDEM+ WDELQVRLISQF+NASS IGRLQ+LQDPKN GSLSGMDGIV+A   KQMESLQLSFSSIKKTMEELGNIV SMEKIY D
Subjt:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVDA---KQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD

Query:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKA
         KQLVKGGSNQPSIKQLQQRVGLKP+LEDCLNGLM+LC+MHRSEY LKES VSALPELFWKA
Subjt:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKA

XP_004144893.1 uncharacterized protein At5g43822 isoform X2 [Cucumis sativus]

6.2e-71

88.89

Show/hide

Query:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVD---AKQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD
        MEAMVKKYQQRFRKFKDEM+ WDELQVRLISQF+NASS IGRLQ+LQDPKN GSLSGMDGIV+   AKQMESLQLSFSSIKKTMEELGNIV SMEKIY D
Subjt:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVD---AKQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD

Query:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKA
         KQLVKGGSNQPSIKQLQQ+VGLKP+LEDCLNGLMLLC MHRSEY+LKES VSALPELFWKA
Subjt:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKA

XP_008447830.1 PREDICTED: uncharacterized protein At5g43822 isoform X4 [Cucumis melo]

2.8e-71

88.34

Show/hide

Query:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVDA---KQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD
        MEAMVKKYQQRFRKFKDEM+ WDELQVRLISQF+NASS IGRLQ+LQDPKN GSLSGMDGIV+A   KQMESLQLSFSSIKKTMEELGN+V SMEKIY D
Subjt:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVDA---KQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD

Query:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKAS
         KQLVKGGSNQPSIKQLQQRVGLKP+LEDCLNGLM+LC+MHRSEY LKES VSALPELFWKAS
Subjt:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKAS

XP_031744200.1 uncharacterized protein At5g43822 isoform X1 [Cucumis sativus]

6.2e-71

88.89

Show/hide

Query:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVD---AKQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD
        MEAMVKKYQQRFRKFKDEM+ WDELQVRLISQF+NASS IGRLQ+LQDPKN GSLSGMDGIV+   AKQMESLQLSFSSIKKTMEELGNIV SMEKIY D
Subjt:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVD---AKQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD

Query:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKA
         KQLVKGGSNQPSIKQLQQ+VGLKP+LEDCLNGLMLLC MHRSEY+LKES VSALPELFWKA
Subjt:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKA

XP_031744201.1 uncharacterized protein At5g43822 isoform X3 [Cucumis sativus]

2.1e-71

88.96

Show/hide

Query:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVD---AKQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD
        MEAMVKKYQQRFRKFKDEM+ WDELQVRLISQF+NASS IGRLQ+LQDPKN GSLSGMDGIV+   AKQMESLQLSFSSIKKTMEELGNIV SMEKIY D
Subjt:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVD---AKQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD

Query:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKAS
         KQLVKGGSNQPSIKQLQQ+VGLKP+LEDCLNGLMLLC MHRSEY+LKES VSALPELFWKAS
Subjt:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKAS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K4X9 Uncharacterized protein

3.0e-71

88.89

Show/hide

Query:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVD---AKQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD
        MEAMVKKYQQRFRKFKDEM+ WDELQVRLISQF+NASS IGRLQ+LQDPKN GSLSGMDGIV+   AKQMESLQLSFSSIKKTMEELGNIV SMEKIY D
Subjt:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVD---AKQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD

Query:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKA
         KQLVKGGSNQPSIKQLQQ+VGLKP+LEDCLNGLMLLC MHRSEY+LKES VSALPELFWKA
Subjt:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKA

A0A1S3BHR8 uncharacterized protein At5g43822 isoform X4

1.4e-71

88.34

Show/hide

Query:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVDA---KQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD
        MEAMVKKYQQRFRKFKDEM+ WDELQVRLISQF+NASS IGRLQ+LQDPKN GSLSGMDGIV+A   KQMESLQLSFSSIKKTMEELGN+V SMEKIY D
Subjt:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVDA---KQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD

Query:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKAS
         KQLVKGGSNQPSIKQLQQRVGLKP+LEDCLNGLM+LC+MHRSEY LKES VSALPELFWKAS
Subjt:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKAS

A0A1S3BIA7 uncharacterized protein At5g43822 isoform X1

3.9e-71

88.27

Show/hide

Query:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVDA---KQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD
        MEAMVKKYQQRFRKFKDEM+ WDELQVRLISQF+NASS IGRLQ+LQDPKN GSLSGMDGIV+A   KQMESLQLSFSSIKKTMEELGN+V SMEKIY D
Subjt:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVDA---KQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD

Query:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKA
         KQLVKGGSNQPSIKQLQQRVGLKP+LEDCLNGLM+LC+MHRSEY LKES VSALPELFWKA
Subjt:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKA

A0A5D3DI19 Uncharacterized protein

3.0e-71

88.89

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Query:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVDA---KQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD
        MEAMVKKYQQRFRKFKDEM+ WDELQVRLISQF+NASS IGRLQ+LQDPKN GSLSGMDGIV+A   KQMESLQLSFSSIKKTMEELGNIV SMEKIY D
Subjt:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVDA---KQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD

Query:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKA
         KQLVKGGSNQPSIKQLQQRVGLKP+LEDCLNGLM+LC+MHRSEY LKES VSALPELFWKA
Subjt:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKA

A0A6J1EQT0 uncharacterized protein At5g43822 isoform X1

1.1e-70

88.82

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Query:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVD---AKQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD
        MEAMVKKYQQRFRKFKDEM+ WDELQVRLISQF NASS IGRLQVLQDP N+GSLSGMDGIVD   AKQMESLQL FSSI KTMEELGNIVRSMEKIY D
Subjt:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVD---AKQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD

Query:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWK
         KQL+KGGSNQPS KQLQQRVGLKP+LEDCLNGL LLCDMHRSEYHLKES VSALPELFWK
Subjt:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWK

SwissProt top hits

e value

%identity

Alignment

Q6NPG7 Uncharacterized protein At5g43822

3.3e-30

46.01

Show/hide

Query:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVDA---KQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD
        MEA+++K+QQ+FRK K+EME W+ LQVR +S F+NASS I RLQ +Q+  ++G+L  + GI DA   +QM  L+    S+K  MEE    V + EK++ D
Subjt:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVDA---KQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD

Query:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKAS
          QL +  S++   +++++R+G+KP + DCL GL +L DMH+SEYHLK S +S L  L  K S
Subjt:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKAS

Arabidopsis top hits

e value

%identity

Alignment

AT5G43822.1 Pentatricopeptide repeat (PPR) superfamily protein

2.3e-31

46.01

Show/hide

Query:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVDA---KQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD
        MEA+++K+QQ+FRK K+EME W+ LQVR +S F+NASS I RLQ +Q+  ++G+L  + GI DA   +QM  L+    S+K  MEE    V + EK++ D
Subjt:  MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVDA---KQMESLQLSFSSIKKTMEELGNIVRSMEKIYHD

Query:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKAS
          QL +  S++   +++++R+G+KP + DCL GL +L DMH+SEYHLK S +S L  L  K S
Subjt:  EKQLVKGGSNQPSIKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKAS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAGGCCATGGTGAAAAAGTATCAGCAAAGATTCAGAAAGTTCAAGGATGAAATGGAACTCTGGGACGAGCTTCAAGTTCGCCTGATTTCACAGTTCAAAAACGCTTC
CTCCTTCATCGGGAGGTTGCAGGTGCTTCAAGATCCTAAGAATCATGGCAGTCTGTCTGGCATGGATGGCATTGTAGATGCGAAGCAGATGGAATCCTTGCAACTTAGTT
TCTCGTCTATTAAAAAAACAATGGAAGAACTTGGGAATATTGTCCGTTCAATGGAGAAGATTTATCATGATGAGAAGCAATTAGTCAAAGGTGGTTCCAATCAGCCATCA
ATAAAACAACTACAGCAAAGAGTTGGTTTAAAACCGAATCTTGAAGATTGCTTGAATGGGTTAATGCTTCTATGTGACATGCACCGCTCTGAGTACCATCTTAAGGAATC
TACGGTCTCAGCACTTCCTGAACTTTTCTGGAAAGCCAGTTGA

mRNA sequence

Show/hide mRNA sequence

CTTTTTAGAGATGAAAGGACTATTTTACCCCTTTTAACAAATCCCTAACGTATCGTCTTCCTTCTCCACCATCCCACACGCACGCATTCCTCCTCCGTCCCTCTGCCGGT
GGCGAGTTTGAAGCGCGACGGCGAACGGCGACCGGAGGCAAGTTTGAAAGGCGACGGCGAACGGAAACCGGCGGCGAGTTTGAAGGTCAACGAAGAACGGCTATTTGCGA
ACCACGACTGCGACTTGGACTATTTGAACCCCATTCTTCTGTAACTAAAACCATTCTTCTTCCAGTAGCAAAACACGATGAAGTTCTATCATACGAATTCTCAAGCACTT
TTGTTACAGATTCGACGCCAAGAGGAGCTTTTGAAATATAAAAGAAGGTGGGAGCTACTTATTGAGTATTGATTTACGCACTCCCAAAAAGTTCTTGCAAGTAGTGGTGT
GACTATAAGTTTGATGATGGCGTGGAAGGAGGCTTGACTAGGAGCCATTTAGTTGTCCCTTTTGTCATTTGCTTAGAATTTTGGTTAGTTTACTTTTCCTGTTTGGGTTG
ATCCTTGGTCAAAACAGATAATTGTTATTTGATTTATTTTCTAAATGTTTAGAGTTGTTCTTTCGCTTCTTGATTTAGTTGTTTAATTGCTTTGGCGAGTTAAGACCTTG
ATAGTTTAATAGAGAATTTTAGTTGGGTGCCTTTTTAGAGTAGCGAGTAGAACTTGTTGCTTAACTTGAGTTAAGTGAAATGAGAAATTAGTAATGCTCTCTAATTTAGT
TAGAGACTTGGAGGCGTTACAAGAGTACTTTGAAATTCCAATCTATGGAGGCCATGGTGAAAAAGTATCAGCAAAGATTCAGAAAGTTCAAGGATGAAATGGAACTCTGG
GACGAGCTTCAAGTTCGCCTGATTTCACAGTTCAAAAACGCTTCCTCCTTCATCGGGAGGTTGCAGGTGCTTCAAGATCCTAAGAATCATGGCAGTCTGTCTGGCATGGA
TGGCATTGTAGATGCGAAGCAGATGGAATCCTTGCAACTTAGTTTCTCGTCTATTAAAAAAACAATGGAAGAACTTGGGAATATTGTCCGTTCAATGGAGAAGATTTATC
ATGATGAGAAGCAATTAGTCAAAGGTGGTTCCAATCAGCCATCAATAAAACAACTACAGCAAAGAGTTGGTTTAAAACCGAATCTTGAAGATTGCTTGAATGGGTTAATG
CTTCTATGTGACATGCACCGCTCTGAGTACCATCTTAAGGAATCTACGGTCTCAGCACTTCCTGAACTTTTCTGGAAAGCCAGTTGAATTCATCTTTGATATCATACTTG
TCCCGGAAGCCTAGCTAATATGAGATAATCAAACAGTTCAACAACATTTGATTGCATCTACAAGCTTTCTTCCAAGGAAAAGCTTGTATTCTTGCAATGTTGAGTATTGG
AAGAGATGATCATTATCACGAACATAAAAGCCTCAGAGATATTTACCTCGCCAGTGTATGTACAAGTCACAATAATCAATTGAAAAAGAAAAATAGTGTGAGTGTTTATC
AGTATTTCCCTCTCCACAATTATAGGTAGTAGCTAGCAGGTTATTTTATTTTCATTTTAGAGGAAGAAGATGACGTAAAACTGAAAGAAAAGACGGGAAAAGAAGGATTT
TTTTTCCTTCTTCTTCTTAATGTGAGTTCAACAATATATGGAAGTGGAGATTCAAACCTTTGATATTTT

Protein sequence

Show/hide protein sequence

MEAMVKKYQQRFRKFKDEMELWDELQVRLISQFKNASSFIGRLQVLQDPKNHGSLSGMDGIVDAKQMESLQLSFSSIKKTMEELGNIVRSMEKIYHDEKQLVKGGSNQPS
IKQLQQRVGLKPNLEDCLNGLMLLCDMHRSEYHLKESTVSALPELFWKAS

Tan0018132 (gene) of Snake gourd v1 genome