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Tan0018161 (gene) of Snake gourd v1 genome

Gene IDTan0018161
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionElongation factor
Genome locationLG06:8567209..8574526
RNA-Seq ExpressionTan0018161
SyntenyTan0018161
Gene Ontology termsGO:0006414 - translational elongation (biological process)
GO:0003746 - translation elongation factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAY40670.1 hypothetical protein CUMW_053760 [Citrus unshiu]1.1e-1881.13Show/hide
Query:  GWFRSLLISPLKKLWDRLHSPHRNRKGIYILYKDVKCCPCEDVQMLWSILVES
        GW  SL++SPLKKLWDRLHS HR R+G+YILYKDVK CPCEDVQ+LWSILVES
Subjt:  GWFRSLLISPLKKLWDRLHSPHRNRKGIYILYKDVKCCPCEDVQMLWSILVES

KDO68697.1 hypothetical protein CISIN_1g035399mg [Citrus sinensis]1.1e-1881.13Show/hide
Query:  GWFRSLLISPLKKLWDRLHSPHRNRKGIYILYKDVKCCPCEDVQMLWSILVES
        GW  SL++SPLKKLWDRLHS HR R+G+YILYKDVK CPCEDVQ+LWSILVES
Subjt:  GWFRSLLISPLKKLWDRLHSPHRNRKGIYILYKDVKCCPCEDVQMLWSILVES

KGN44804.1 hypothetical protein Csa_015628 [Cucumis sativus]1.3e-2282.54Show/hide
Query:  MGWFRSLLISPLKKLWDRLHSPHR-NRKGIYILYKDVKCCPCEDVQMLWSILVESSSLPKAPL
        MGWF+S LISP KKLWDRLHSPH+ NRKGIYILYKDVK CPCEDVQMLWSILV+S+S P +PL
Subjt:  MGWFRSLLISPLKKLWDRLHSPHR-NRKGIYILYKDVKCCPCEDVQMLWSILVESSSLPKAPL

RXI05532.1 hypothetical protein DVH24_017574 [Malus domestica]4.5e-2076.56Show/hide
Query:  MGWFRSLLISPLKKLWDRLHSPHRNRKGIYILYKDVKCCPCEDVQMLWSILVESSSLPKAPLLP
        MGW RS L+SPLKKLWDRLHS HR RKGIYILYKDV+ CPCEDV +LWSILV+S S P  P LP
Subjt:  MGWFRSLLISPLKKLWDRLHSPHRNRKGIYILYKDVKCCPCEDVQMLWSILVESSSLPKAPLLP

TQD88537.1 hypothetical protein C1H46_025957 [Malus baccata]1.9e-1875Show/hide
Query:  MGWFRSLLISPLKKLWDRLHSPHRNRKGIYILYKDVKCCPCEDVQMLWSILVESSSLPKAPLLP
        MGW  S L SPLKKLWDRLHS HR RKGIYILYKDV+ CPCEDV +LWSILV+S S P A  LP
Subjt:  MGWFRSLLISPLKKLWDRLHSPHRNRKGIYILYKDVKCCPCEDVQMLWSILVESSSLPKAPLLP

TrEMBL top hitse value%identityAlignment
A0A067FZ56 Uncharacterized protein5.3e-1981.13Show/hide
Query:  GWFRSLLISPLKKLWDRLHSPHRNRKGIYILYKDVKCCPCEDVQMLWSILVES
        GW  SL++SPLKKLWDRLHS HR R+G+YILYKDVK CPCEDVQ+LWSILVES
Subjt:  GWFRSLLISPLKKLWDRLHSPHRNRKGIYILYKDVKCCPCEDVQMLWSILVES

A0A0A0K7C3 Uncharacterized protein6.1e-2382.54Show/hide
Query:  MGWFRSLLISPLKKLWDRLHSPHR-NRKGIYILYKDVKCCPCEDVQMLWSILVESSSLPKAPL
        MGWF+S LISP KKLWDRLHSPH+ NRKGIYILYKDVK CPCEDVQMLWSILV+S+S P +PL
Subjt:  MGWFRSLLISPLKKLWDRLHSPHR-NRKGIYILYKDVKCCPCEDVQMLWSILVESSSLPKAPL

A0A2H5NKH5 Uncharacterized protein5.3e-1981.13Show/hide
Query:  GWFRSLLISPLKKLWDRLHSPHRNRKGIYILYKDVKCCPCEDVQMLWSILVES
        GW  SL++SPLKKLWDRLHS HR R+G+YILYKDVK CPCEDVQ+LWSILVES
Subjt:  GWFRSLLISPLKKLWDRLHSPHRNRKGIYILYKDVKCCPCEDVQMLWSILVES

A0A498KIY5 Uncharacterized protein2.2e-2076.56Show/hide
Query:  MGWFRSLLISPLKKLWDRLHSPHRNRKGIYILYKDVKCCPCEDVQMLWSILVESSSLPKAPLLP
        MGW RS L+SPLKKLWDRLHS HR RKGIYILYKDV+ CPCEDV +LWSILV+S S P  P LP
Subjt:  MGWFRSLLISPLKKLWDRLHSPHRNRKGIYILYKDVKCCPCEDVQMLWSILVESSSLPKAPLLP

A0A540LPX3 Uncharacterized protein9.1e-1975Show/hide
Query:  MGWFRSLLISPLKKLWDRLHSPHRNRKGIYILYKDVKCCPCEDVQMLWSILVESSSLPKAPLLP
        MGW  S L SPLKKLWDRLHS HR RKGIYILYKDV+ CPCEDV +LWSILV+S S P A  LP
Subjt:  MGWFRSLLISPLKKLWDRLHSPHRNRKGIYILYKDVKCCPCEDVQMLWSILVESSSLPKAPLLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATGGTTCAGATCCCTCCTCATTTCGCCATTGAAGAAGCTTTGGGATCGTCTTCACTCCCCCCATAGAAACCGGAAAGGAATCTACATTTTGTACAAGGATGTGAA
GTGTTGCCCCTGTGAAGATGTGCAAATGCTTTGGTCCATTCTCGTGGAGTCGAGTTCGCTTCCTAAGGCGCCATTGCTGCCGTGA
mRNA sequenceShow/hide mRNA sequence
CCCAAACAAACTCTCACCATAGATTAGTAGTTTTGAAGTTTTAAAACATCCCCTCTCTCTCTCTTTCCTTTCTCACCTTCTTCACCAACCATGAACCAAACCTAGCCAAA
CTGAAATAATCTCACAGGCACTGTGCCTTTTCTTCTTCTTCTTCTTCCTAATGGGATGGTTCAGATCCCTCCTCATTTCGCCATTGAAGAAGCTTTGGGATCGTCTTCAC
TCCCCCCATAGAAACCGGAAAGGAATCTACATTTTGTACAAGGATGTGAAGTGTTGCCCCTGTGAAGATGTGCAAATGCTTTGGTCCATTCTCGTGGAGTCGAGTTCGCT
TCCTAAGGCGCCATTGCTGCCGTGAACCAAGCTTTTCTAGGTCTTATGGGTAGCGAATCTCAGCTGTCTGCGGCGGAGAGAGATGGGGGTTCTTGTACAGCGGCGGTGGC
TCCGGCGACCGGCTACTACTTTGTACATTATCTTAATTACTTCTCCCCCTTCCTCGGCTTAGCATTGGGAGAATTTTATATAATTTTGCAATGCATGATAA
Protein sequenceShow/hide protein sequence
MGWFRSLLISPLKKLWDRLHSPHRNRKGIYILYKDVKCCPCEDVQMLWSILVESSSLPKAPLLP