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Tan0018169 (gene) of Snake gourd v1 genome

Gene IDTan0018169
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG02:72868415..72870617
RNA-Seq ExpressionTan0018169
SyntenyTan0018169
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]1.4e-2471.76Show/hide
Query:  IELKEKKVKFDLLVLETCLVENDNFTWILDSRATNHVFFSFQQTSSFKELEEGEMTLKVGTGDVVSARAVGDAKFFFRDKFILLK
        ++ KEK+ K+DLLVLETCLVEND   WILDS ATNHV  S Q+TSSFK+LE+ EMTLKVGTGDV+SARAVGDAK FF +KF+ L+
Subjt:  IELKEKKVKFDLLVLETCLVENDNFTWILDSRATNHVFFSFQQTSSFKELEEGEMTLKVGTGDVVSARAVGDAKFFFRDKFILLK

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]4.2e-2470.59Show/hide
Query:  IELKEKKVKFDLLVLETCLVENDNFTWILDSRATNHVFFSFQQTSSFKELEEGEMTLKVGTGDVVSARAVGDAKFFFRDKFILLK
        ++  EK+ K+DLLVLETCLVEND   WILDS ATNHV  S Q+TSSFK+LE+ EMTLKVGTGDV+SARAVGDAK FF +KF+ L+
Subjt:  IELKEKKVKFDLLVLETCLVENDNFTWILDSRATNHVFFSFQQTSSFKELEEGEMTLKVGTGDVVSARAVGDAKFFFRDKFILLK

KAA0059877.1 gag/pol protein [Cucumis melo var. makuwa]5.5e-2467.06Show/hide
Query:  KEKKVKFDLLVLETCLVENDNFTWILDSRATNHVFFSFQQTSSFKELEEGEMTLKVGTGDVVSARAVGDAKFFFRDKFILLKKSI
        KE + K+DLLVLETCLVEN+N TWILDS ATNH+  SFQ+TSS+K L EG++TLKVGTG++VSA+AVGD K FF D++I+LK ++
Subjt:  KEKKVKFDLLVLETCLVENDNFTWILDSRATNHVFFSFQQTSSFKELEEGEMTLKVGTGDVVSARAVGDAKFFFRDKFILLKKSI

KAA0060534.1 gag/pol protein [Cucumis melo var. makuwa]3.2e-2471.76Show/hide
Query:  IELKEKKVKFDLLVLETCLVENDNFTWILDSRATNHVFFSFQQTSSFKELEEGEMTLKVGTGDVVSARAVGDAKFFFRDKFILLK
        ++ KEK+ K+DLLVLETCLVEND   WILDS ATNHV  S Q+TSSFK+LEE EM LKVGTGDV+SARAVGDAK FF +KF+ L+
Subjt:  IELKEKKVKFDLLVLETCLVENDNFTWILDSRATNHVFFSFQQTSSFKELEEGEMTLKVGTGDVVSARAVGDAKFFFRDKFILLK

TYK27179.1 gag/pol protein [Cucumis melo var. makuwa]4.2e-2470.59Show/hide
Query:  IELKEKKVKFDLLVLETCLVENDNFTWILDSRATNHVFFSFQQTSSFKELEEGEMTLKVGTGDVVSARAVGDAKFFFRDKFILLK
        ++ KEK+ K+DLLVLETCLV ND   WILDS ATNHV  S Q+T+ FK+LEE EMTLKVGTGDV+SARAVGDAK FFR+KF+ L+
Subjt:  IELKEKKVKFDLLVLETCLVENDNFTWILDSRATNHVFFSFQQTSSFKELEEGEMTLKVGTGDVVSARAVGDAKFFFRDKFILLK

TrEMBL top hitse value%identityAlignment
A0A5A7T2V9 Gag/pol protein2.0e-2470.59Show/hide
Query:  IELKEKKVKFDLLVLETCLVENDNFTWILDSRATNHVFFSFQQTSSFKELEEGEMTLKVGTGDVVSARAVGDAKFFFRDKFILLK
        ++  EK+ K+DLLVLETCLVEND   WILDS ATNHV  S Q+TSSFK+LE+ EMTLKVGTGDV+SARAVGDAK FF +KF+ L+
Subjt:  IELKEKKVKFDLLVLETCLVENDNFTWILDSRATNHVFFSFQQTSSFKELEEGEMTLKVGTGDVVSARAVGDAKFFFRDKFILLK

A0A5A7TZD0 Gag/pol protein7.0e-2571.76Show/hide
Query:  IELKEKKVKFDLLVLETCLVENDNFTWILDSRATNHVFFSFQQTSSFKELEEGEMTLKVGTGDVVSARAVGDAKFFFRDKFILLK
        ++ KEK+ K+DLLVLETCLVEND   WILDS ATNHV  S Q+TSSFK+LE+ EMTLKVGTGDV+SARAVGDAK FF +KF+ L+
Subjt:  IELKEKKVKFDLLVLETCLVENDNFTWILDSRATNHVFFSFQQTSSFKELEEGEMTLKVGTGDVVSARAVGDAKFFFRDKFILLK

A0A5D3BNE1 Gag/pol protein1.6e-2471.76Show/hide
Query:  IELKEKKVKFDLLVLETCLVENDNFTWILDSRATNHVFFSFQQTSSFKELEEGEMTLKVGTGDVVSARAVGDAKFFFRDKFILLK
        ++ KEK+ K+DLLVLETCLVEND   WILDS ATNHV  S Q+TSSFK+LEE EM LKVGTGDV+SARAVGDAK FF +KF+ L+
Subjt:  IELKEKKVKFDLLVLETCLVENDNFTWILDSRATNHVFFSFQQTSSFKELEEGEMTLKVGTGDVVSARAVGDAKFFFRDKFILLK

A0A5D3DMH3 Gag/pol protein2.7e-2467.06Show/hide
Query:  KEKKVKFDLLVLETCLVENDNFTWILDSRATNHVFFSFQQTSSFKELEEGEMTLKVGTGDVVSARAVGDAKFFFRDKFILLKKSI
        KE + K+DLLVLETCLVEN+N TWILDS ATNH+  SFQ+TSS+K L EG++TLKVGTG++VSA+AVGD K FF D++I+LK ++
Subjt:  KEKKVKFDLLVLETCLVENDNFTWILDSRATNHVFFSFQQTSSFKELEEGEMTLKVGTGDVVSARAVGDAKFFFRDKFILLKKSI

A0A5D3DUY5 Gag/pol protein2.0e-2470.59Show/hide
Query:  IELKEKKVKFDLLVLETCLVENDNFTWILDSRATNHVFFSFQQTSSFKELEEGEMTLKVGTGDVVSARAVGDAKFFFRDKFILLK
        ++ KEK+ K+DLLVLETCLV ND   WILDS ATNHV  S Q+T+ FK+LEE EMTLKVGTGDV+SARAVGDAK FFR+KF+ L+
Subjt:  IELKEKKVKFDLLVLETCLVENDNFTWILDSRATNHVFFSFQQTSSFKELEEGEMTLKVGTGDVVSARAVGDAKFFFRDKFILLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAATGTCAGACCTACCAGTCTCTTATGGATAATGAGGGACAGGTTGATGGAGAGGCAAATTAGTTTGCTCATTCCAAAAGGCTCCAGATGGGTTCATCCTCTGGA
ACCAAGCCCAACGGTTCTTTTTCTGGGATTAAGAAGACTCAGAAGAAGAGGAAAAGGGAAAGCTTCTGCTACTGCAAACATTGAGCTCAAAGAGAAGAAAGTTAAATTCG
ATTTACTTGTTCTTGAAACTTGTTTAGTGGAAAATGATAATTTTACCTGGATACTTGATTCAAGAGCTACTAATCATGTTTTCTTTTCGTTTCAGCAAACTAGTTCCTTC
AAGGAGCTCGAAGAGGGTGAGATGACGCTCAAGGTCGGAACGGGAGACGTCGTCTCAGCTCGTGCTGTGGGAGATGCCAAGTTTTTTTTCAGAGATAAATTTATTTTATT
AAAAAAATCTATATGTAGTTCCTAA
mRNA sequenceShow/hide mRNA sequence
AATTTGAAAAATAATTGTTGGTTTTATAATATAGTTCTTTGTCATAAGTTAATTATTAAAATTTATAAGTGTTATAAATTAAAGGGGTTTTAGAAACCGTAACCTATAAT
AAAGAAATGCATACAAACATAAGAACTTGGGTAAAATTAAATTAGTTTAAAATTGTTTAAAATTAATTTAGATCTAAGTTTTAATTTCTAATAGGATTAGAAGTTAGTCT
TACATTAGGACATTAGAACTTTGGTTATAAGGTGGTGAAGTTCTGTCTAAGGTTGGGGGAAGCTGACGGTTAACGGAACACCTCCTACCTTGGAACTGACCCGGAGCTTG
AGTTGAATTAACCTTAGTTCTATTTTATATCTAGGTAATTAAATTGTTTATTCACCTAGACATAAGGTTAAAAGACCTAGTTATAAAAGTTATAATATGCATAGACTTAG
ATAGATTCTTTTAGCCAGAATTCGACTAAGTTAAACCTATACCCTAATCTTAGGAGCTTCAGTGGGAGAAAATGAGATGTTCGCATCGAGTTTACTCTCACGTCCTCAAG
AGTTCACACCGTGAGTTCCATGCTCGGCTACGTGGCATCAATAGGGTGTCCCCTACGGTAAGTGTTTGCATGGTTCAATACCAAGGTGAATGAGAGAAGTATCCATAGTA
AATGGGAGCAGGATGCGTGTCAACGTATCCTACAGTCTCCTCCATTCTATAGTCTGCTTGCTAGGTTGTCCTGGAACAGCCAAACCCTACGGAGGGCCTGACTATAGGGA
TCGGAACACCGCAAACTCCAGAAATGGATAGGGTCTCTTTGGTAATTTGTCAACAGTTGTCTTTCTTAATAGTAGCCTGTTTGCTCGGACCTATTGGATCTGAAAATGGT
AGGGTCACATTTACGGGATGAGTTAAGCTAGTTAACAAGTCCTTGACCAAACAAACGATAGCTAAGGACCATTGAGACATGAGATGTTCTGGTAGTGAGAATTGGCTGAG
AAAGTCACAATTCAAGGGAGGAATGACTGACCGCCCGACGGAGGCTTTTATTCTAAACCCTTGAAATATCGTTGCAAAATTAAAGGTTTAATTTAAACACTGAGTTTAGT
TTAAACACTAGGGTTCTTTAATAATTTTGCTAAATTTGATTGGTTTATAATGGGTTAAAGGCATAACTAATTAGAACTATTTTGGAATTTCAGCATATCGTCCTCGTATA
TAGCCTTACTCAAAAGCGAACGTTTAACTGGTGAAAACTTTACTACGTGGAAGTCCAACCTGGATGCGATTCTTGTTATTGACGACCTACGATTTGTACTGACTTAGGAA
TGTCCTCAGGTCCCTGCGTGAAACGCTCCTCAATCAGTTAAGGATGTGTTTGGCCGCTGGTCCAAGGCCAAGGCTTATATCTTGGCTGGCATATCTGATGTTTTGGCCAG
GAAATTGAAGGGTATGGTCTCAGCTCGTGAGATCATGGGTTATCTGCAGAATTTGTCTGGACAACCGTCTGAACAAATTCGGCACGAATCACTCAAGTACGTTTATAACG
CGGGCATGAAGGAGGGAACTTCAGTGAGAGAACATGTTCTCAATCTTATAGTTCACTTCAACGTGGCCGAAATGAACGGAGTGGTCTTGGATGAACAATGTCAGACCTAC
CAGTCTCTTATGGATAATGAGGGACAGGTTGATGGAGAGGCAAATTAGTTTGCTCATTCCAAAAGGCTCCAGATGGGTTCATCCTCTGGAACCAAGCCCAACGGTTCTTT
TTCTGGGATTAAGAAGACTCAGAAGAAGAGGAAAAGGGAAAGCTTCTGCTACTGCAAACATTGAGCTCAAAGAGAAGAAAGTTAAATTCGATTTACTTGTTCTTGAAACT
TGTTTAGTGGAAAATGATAATTTTACCTGGATACTTGATTCAAGAGCTACTAATCATGTTTTCTTTTCGTTTCAGCAAACTAGTTCCTTCAAGGAGCTCGAAGAGGGTGA
GATGACGCTCAAGGTCGGAACGGGAGACGTCGTCTCAGCTCGTGCTGTGGGAGATGCCAAGTTTTTTTTCAGAGATAAATTTATTTTATTAAAAAAATCTATATGTAGTT
CCTAA
Protein sequenceShow/hide protein sequence
MNNVRPTSLLWIMRDRLMERQISLLIPKGSRWVHPLEPSPTVLFLGLRRLRRRGKGKASATANIELKEKKVKFDLLVLETCLVENDNFTWILDSRATNHVFFSFQQTSSF
KELEEGEMTLKVGTGDVVSARAVGDAKFFFRDKFILLKKSICSS