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Tan0018173 (gene) of Snake gourd v1 genome

Gene IDTan0018173
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG07:18282465..18283344
RNA-Seq ExpressionTan0018173
SyntenyTan0018173
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]3.8e-0946.08Show/hide
Query:  MTETLSPRLYSTVCTQ-----------------VEIELPVPENLTTNL---------------------CLWSTGIVREVNDVCWLHAVCRAKLAGSSGG
        MTE LSPRLY TVCTQ                 VEIELPVP+ L T+                        W  GIVRE +DVCWLHAV RAK AG  GG
Subjt:  MTETLSPRLYSTVCTQ-----------------VEIELPVPENLTTNL---------------------CLWSTGIVREVNDVCWLHAVCRAKLAGSSGG

Query:  GV
        GV
Subjt:  GV

TYK05030.1 uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa]2.3e-0640.91Show/hide
Query:  MTETLSPRLYSTVCTQ-----------------VEIELPVPENLTT----------------------------NLCLWSTGIVREVNDVCWLHAVCRAK
        MTE LS +LYSTVCT                  VEIELPVP+ L T                            N+ + S GI+R  +DVCWLHAV RAK
Subjt:  MTETLSPRLYSTVCTQ-----------------VEIELPVPENLTT----------------------------NLCLWSTGIVREVNDVCWLHAVCRAK

Query:  LAGSSGGGVT
        +AGS  GGVT
Subjt:  LAGSSGGGVT

TYK06355.1 uncharacterized protein E5676_scaffold163G00340 [Cucumis melo var. makuwa]1.3e-0650Show/hide
Query:  MTETLSPRLYSTVCTQ-----------------VEIELPVPENLTTNL------CLWSTGIVREVNDVCWLHAVCRAKLAGSSGGGVT
        MTE LS  LY TVCTQ                 VEIELPVP+ L T+          S GIVRE N VCWL AV RAK  G  GGGVT
Subjt:  MTETLSPRLYSTVCTQ-----------------VEIELPVPENLTTNL------CLWSTGIVREVNDVCWLHAVCRAKLAGSSGGGVT

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]1.3e-0649.43Show/hide
Query:  MTETLSPRLYSTVCTQ-----------------VEIELPVPENLTTNL-----CLWSTGIVREVNDVCWLHAVCRAKLAGSSGGGVT
        MTE LS RLY TVCTQ                 VEIELPV + L T+         S GIVR  +DVCWLH+V RAK A   GGGVT
Subjt:  MTETLSPRLYSTVCTQ-----------------VEIELPVPENLTTNL-----CLWSTGIVREVNDVCWLHAVCRAKLAGSSGGGVT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]3.8e-0946.08Show/hide
Query:  MTETLSPRLYSTVCTQ-----------------VEIELPVPENLTTNL---------------------CLWSTGIVREVNDVCWLHAVCRAKLAGSSGG
        MTE LSPRLY TVCTQ                 VEIELPVP+ L T+                        W  GIVRE +DVCWLHAV RAK AG  GG
Subjt:  MTETLSPRLYSTVCTQ-----------------VEIELPVPENLTTNL---------------------CLWSTGIVREVNDVCWLHAVCRAKLAGSSGG

Query:  GV
        GV
Subjt:  GV

TrEMBL top hitse value%identityAlignment
A0A5A7VMG9 Reverse transcriptase1.8e-0946.08Show/hide
Query:  MTETLSPRLYSTVCTQ-----------------VEIELPVPENLTTNL---------------------CLWSTGIVREVNDVCWLHAVCRAKLAGSSGG
        MTE LSPRLY TVCTQ                 VEIELPVP+ L T+                        W  GIVRE +DVCWLHAV RAK AG  GG
Subjt:  MTETLSPRLYSTVCTQ-----------------VEIELPVPENLTTNL---------------------CLWSTGIVREVNDVCWLHAVCRAKLAGSSGG

Query:  GV
        GV
Subjt:  GV

A0A5D3C0X3 Retrotrans_gag domain-containing protein1.1e-0640.91Show/hide
Query:  MTETLSPRLYSTVCTQ-----------------VEIELPVPENLTT----------------------------NLCLWSTGIVREVNDVCWLHAVCRAK
        MTE LS +LYSTVCT                  VEIELPVP+ L T                            N+ + S GI+R  +DVCWLHAV RAK
Subjt:  MTETLSPRLYSTVCTQ-----------------VEIELPVPENLTT----------------------------NLCLWSTGIVREVNDVCWLHAVCRAK

Query:  LAGSSGGGVT
        +AGS  GGVT
Subjt:  LAGSSGGGVT

A0A5D3C4P7 Retrotrans_gag domain-containing protein6.5e-0750Show/hide
Query:  MTETLSPRLYSTVCTQ-----------------VEIELPVPENLTTNL------CLWSTGIVREVNDVCWLHAVCRAKLAGSSGGGVT
        MTE LS  LY TVCTQ                 VEIELPVP+ L T+          S GIVRE N VCWL AV RAK  G  GGGVT
Subjt:  MTETLSPRLYSTVCTQ-----------------VEIELPVPENLTTNL------CLWSTGIVREVNDVCWLHAVCRAKLAGSSGGGVT

A0A5D3CU23 Retrotrans_gag domain-containing protein6.5e-0749.43Show/hide
Query:  MTETLSPRLYSTVCTQ-----------------VEIELPVPENLTTNL-----CLWSTGIVREVNDVCWLHAVCRAKLAGSSGGGVT
        MTE LS RLY TVCTQ                 VEIELPV + L T+         S GIVR  +DVCWLH+V RAK A   GGGVT
Subjt:  MTETLSPRLYSTVCTQ-----------------VEIELPVPENLTTNL-----CLWSTGIVREVNDVCWLHAVCRAKLAGSSGGGVT

A0A5D3DX39 Reverse transcriptase1.8e-0946.08Show/hide
Query:  MTETLSPRLYSTVCTQ-----------------VEIELPVPENLTTNL---------------------CLWSTGIVREVNDVCWLHAVCRAKLAGSSGG
        MTE LSPRLY TVCTQ                 VEIELPVP+ L T+                        W  GIVRE +DVCWLHAV RAK AG  GG
Subjt:  MTETLSPRLYSTVCTQ-----------------VEIELPVPENLTTNL---------------------CLWSTGIVREVNDVCWLHAVCRAKLAGSSGG

Query:  GV
        GV
Subjt:  GV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGACATTGAGCCCGAGGCTATATAGTACTGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGAAAACCTGACTACGAACTTATGTTTATGGTCAACAGG
TATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCACGCCGTCTGCCGGGCTAAGTTAGCAGGTAGTTCGGGAGGGGGTGTGACACAAGGCTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGACATTGAGCCCGAGGCTATATAGTACTGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGAAAACCTGACTACGAACTTATGTTTATGGTCAACAGG
TATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCACGCCGTCTGCCGGGCTAAGTTAGCAGGTAGTTCGGGAGGGGGTGTGACACAAGGCTGTTAA
Protein sequenceShow/hide protein sequence
MTETLSPRLYSTVCTQVEIELPVPENLTTNLCLWSTGIVREVNDVCWLHAVCRAKLAGSSGGGVTQGC