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Tan0018185 (gene) of Snake gourd v1 genome

Gene IDTan0018185
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG03:32630458..32630721
RNA-Seq ExpressionTan0018185
SyntenyTan0018185
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]6.3e-2575.58Show/hide
Query:  MHWGLLYILQGIKPRTFEELATRAHDMELSIVSRGNKDLLASDVKKEKKEVKNVEKISKGTTKESMFINTTRLKFVAKGKKKKVEK
        MHWGLLYILQGIKPRTFEELATRAHDMELSI SRG KD L  +VKK+KKE+K  EKI K T+KESM +NTT LKF +KGK+ +VEK
Subjt:  MHWGLLYILQGIKPRTFEELATRAHDMELSIVSRGNKDLLASDVKKEKKEVKNVEKISKGTTKESMFINTTRLKFVAKGKKKKVEK

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]8.2e-2575.58Show/hide
Query:  MHWGLLYILQGIKPRTFEELATRAHDMELSIVSRGNKDLLASDVKKEKKEVKNVEKISKGTTKESMFINTTRLKFVAKGKKKKVEK
        MHWGLLYILQGIKPRTFEELATRAHDMELSI SRG KD L  +VKK+KKE+K  EKI K T KESM +NTT LKF +KGK+ +VEK
Subjt:  MHWGLLYILQGIKPRTFEELATRAHDMELSIVSRGNKDLLASDVKKEKKEVKNVEKISKGTTKESMFINTTRLKFVAKGKKKKVEK

XP_031740568.1 uncharacterized protein LOC116403508 [Cucumis sativus]6.3e-2575.58Show/hide
Query:  MHWGLLYILQGIKPRTFEELATRAHDMELSIVSRGNKDLLASDVKKEKKEVKNVEKISKGTTKESMFINTTRLKFVAKGKKKKVEK
        MHWGLLYILQGIKPRTFEELATRAHDMELSI SRG KD L  +VKK+KKE+K  EKI K T+KESM +NTT LKF +KGK+ +VEK
Subjt:  MHWGLLYILQGIKPRTFEELATRAHDMELSIVSRGNKDLLASDVKKEKKEVKNVEKISKGTTKESMFINTTRLKFVAKGKKKKVEK

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]6.3e-2575.58Show/hide
Query:  MHWGLLYILQGIKPRTFEELATRAHDMELSIVSRGNKDLLASDVKKEKKEVKNVEKISKGTTKESMFINTTRLKFVAKGKKKKVEK
        MHWGLLYILQGIKPRTFEELATRAHDMELSI SRG KD L  +VKK+KKE+K  EKI K T+KESM +NTT LKF +KGK+ +VEK
Subjt:  MHWGLLYILQGIKPRTFEELATRAHDMELSIVSRGNKDLLASDVKKEKKEVKNVEKISKGTTKESMFINTTRLKFVAKGKKKKVEK

XP_031742390.1 uncharacterized protein LOC116401672 [Cucumis sativus]8.2e-2575.58Show/hide
Query:  MHWGLLYILQGIKPRTFEELATRAHDMELSIVSRGNKDLLASDVKKEKKEVKNVEKISKGTTKESMFINTTRLKFVAKGKKKKVEK
        MHWGLLYILQGIKPRTFEELATRAHDMELSI SRG KD L  +VKK+KKE+K  EKI K T KESM +NTT LKF +KGK+ +VEK
Subjt:  MHWGLLYILQGIKPRTFEELATRAHDMELSIVSRGNKDLLASDVKKEKKEVKNVEKISKGTTKESMFINTTRLKFVAKGKKKKVEK

TrEMBL top hitse value%identityAlignment
A0A5A7TVR2 Ty3-gypsy retrotransposon protein5.7e-2472.09Show/hide
Query:  MHWGLLYILQGIKPRTFEELATRAHDMELSIVSRGNKDLLASDVKKEKKEVKNVEKISKGTTKESMFINTTRLKFVAKGKKKKVEK
        MHWGLLYILQGIKPRTFEELATRAHDMELSI +R N DLL  +V+KEKKEVK+  K+ KG TKE+MF++TT LK V+  K+KK+EK
Subjt:  MHWGLLYILQGIKPRTFEELATRAHDMELSIVSRGNKDLLASDVKKEKKEVKNVEKISKGTTKESMFINTTRLKFVAKGKKKKVEK

A0A5A7U2P5 Ty3-gypsy retrotransposon protein4.4e-2470.93Show/hide
Query:  MHWGLLYILQGIKPRTFEELATRAHDMELSIVSRGNKDLLASDVKKEKKEVKNVEKISKGTTKESMFINTTRLKFVAKGKKKKVEK
        MHWGL+YILQGIKPRTFEELATRAHDMELSI +RGN DLL  +V+KEKKEVK+ +K+ KG TKE+M ++TT LK V+  K+KK+EK
Subjt:  MHWGLLYILQGIKPRTFEELATRAHDMELSIVSRGNKDLLASDVKKEKKEVKNVEKISKGTTKESMFINTTRLKFVAKGKKKKVEK

A0A5A7VE63 Uncharacterized protein2.6e-2472.09Show/hide
Query:  MHWGLLYILQGIKPRTFEELATRAHDMELSIVSRGNKDLLASDVKKEKKEVKNVEKISKGTTKESMFINTTRLKFVAKGKKKKVEK
        MHWGLLYILQGIKPRTFEELATRAHDMELSI +RGN DLL  +V+KEKKEVK+ +K+ KG TKE+M ++TT LK V+  K+KK+EK
Subjt:  MHWGLLYILQGIKPRTFEELATRAHDMELSIVSRGNKDLLASDVKKEKKEVKNVEKISKGTTKESMFINTTRLKFVAKGKKKKVEK

A0A5D3BY32 Retrotransposon protein putative ty3-gypsy sub-class5.7e-2472.09Show/hide
Query:  MHWGLLYILQGIKPRTFEELATRAHDMELSIVSRGNKDLLASDVKKEKKEVKNVEKISKGTTKESMFINTTRLKFVAKGKKKKVEK
        MHWGLLYILQGIKPRTFEELATRAHDMELSI SRGN DLL  +V+KEKKEVK+ +K+ KG  KE+M ++TT LK V+  K+KK+EK
Subjt:  MHWGLLYILQGIKPRTFEELATRAHDMELSIVSRGNKDLLASDVKKEKKEVKNVEKISKGTTKESMFINTTRLKFVAKGKKKKVEK

A0A5D3CUG5 Ty3-gypsy retrotransposon protein4.4e-2470.93Show/hide
Query:  MHWGLLYILQGIKPRTFEELATRAHDMELSIVSRGNKDLLASDVKKEKKEVKNVEKISKGTTKESMFINTTRLKFVAKGKKKKVEK
        MHWGLLYILQGIKPRTFEELATRAHDMELSI +RGN DLL  +V+KEKK+VK+ +K+ KG TKE+M ++TT LK V+  K+KK+EK
Subjt:  MHWGLLYILQGIKPRTFEELATRAHDMELSIVSRGNKDLLASDVKKEKKEVKNVEKISKGTTKESMFINTTRLKFVAKGKKKKVEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTGGGGACTTCTCTACATTCTACAAGGGATAAAGCCTCGAACTTTCGAAGAACTAGCAACTCGTGCTCATGACATGGAATTAAGCATAGTTAGCAGAGGAAATAA
AGACCTTCTCGCTTCAGATGTCAAGAAAGAGAAGAAAGAAGTTAAGAACGTCGAGAAAATTTCCAAAGGCACTACCAAGGAATCGATGTTCATTAACACAACTCGTCTTA
AGTTTGTTGCTAAAGGAAAAAAAAAGAAGGTTGAAAAAGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGCATTGGGGACTTCTCTACATTCTACAAGGGATAAAGCCTCGAACTTTCGAAGAACTAGCAACTCGTGCTCATGACATGGAATTAAGCATAGTTAGCAGAGGAAATAA
AGACCTTCTCGCTTCAGATGTCAAGAAAGAGAAGAAAGAAGTTAAGAACGTCGAGAAAATTTCCAAAGGCACTACCAAGGAATCGATGTTCATTAACACAACTCGTCTTA
AGTTTGTTGCTAAAGGAAAAAAAAAGAAGGTTGAAAAAGCATAA
Protein sequenceShow/hide protein sequence
MHWGLLYILQGIKPRTFEELATRAHDMELSIVSRGNKDLLASDVKKEKKEVKNVEKISKGTTKESMFINTTRLKFVAKGKKKKVEKA