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Tan0018186 (gene) of Snake gourd v1 genome

Gene IDTan0018186
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCell wall protein
Genome locationLG05:6023243..6023584
RNA-Seq ExpressionTan0018186
SyntenyTan0018186
Gene Ontology termsNA
InterPro domainsIPR034565 - Putative cell wall protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4274401.1 unnamed protein product [Prunus armeniaca]5.7e-1846.92Show/hide
Query:  MAYRTISSLLPIV---LVILAMSGEAVAARKVRDRSSIDDKKQPQWLIGYDGVSVFIPGIGRITLSPY----------DQG----TGSYSSNSAPR--RQ
        MA +T SS LP++   +V+LA++G+AVA R V  +   DDKKQP+W IG+DG S  IPGIGR+   P           D G    TG   S  AP     
Subjt:  MAYRTISSLLPIV---LVILAMSGEAVAARKVRDRSSIDDKKQPQWLIGYDGVSVFIPGIGRITLSPY----------DQG----TGSYSSNSAPR--RQ

Query:  YIPGGDDNFIPNPGFEVPIPANISGVEETP
        Y+PGGDD F+PNPG+EVP P N +G   TP
Subjt:  YIPGGDDNFIPNPGFEVPIPANISGVEETP

CAB4304874.1 unnamed protein product [Prunus armeniaca]4.3e-1846.92Show/hide
Query:  MAYRTISSLLPIV---LVILAMSGEAVAARKVRDRSSIDDKKQPQWLIGYDGVSVFIPGIGRITLSPY----------DQG----TGSYSSNSAPR--RQ
        MA +T SS LP++   +V+LA++G+AVA R V  +   DDKKQP+W IG+DG S  IPGIGR+ + P           D G    TG   S  AP     
Subjt:  MAYRTISSLLPIV---LVILAMSGEAVAARKVRDRSSIDDKKQPQWLIGYDGVSVFIPGIGRITLSPY----------DQG----TGSYSSNSAPR--RQ

Query:  YIPGGDDNFIPNPGFEVPIPANISGVEETP
        Y+PGGDD F+PNPG+EVP P N +G   TP
Subjt:  YIPGGDDNFIPNPGFEVPIPANISGVEETP

KAA0065341.1 putative cell wall protein [Cucumis melo var. makuwa]2.5e-2660.5Show/hide
Query:  MAYRTISSLLPIVLVILAMSGEAVAARKVRDRSSIDDKKQPQWLIGYDGVSVFIPGIGRITLSPYDQG------TGSYSSNSAPRRQYIPGGDDNFIPNP
        MA+R   SL PI LVILAM+GEAVAAR   +                   SV IPGIGRITLSPYD+G      + SY SN AP+RQYIPGGDDNFIPNP
Subjt:  MAYRTISSLLPIVLVILAMSGEAVAARKVRDRSSIDDKKQPQWLIGYDGVSVFIPGIGRITLSPYDQG------TGSYSSNSAPRRQYIPGGDDNFIPNP

Query:  GFEVPIPANISGVEETPYP
        G+EVPIPANI GV+ET YP
Subjt:  GFEVPIPANISGVEETPYP

XP_022140620.1 putative cell wall protein [Momordica charantia]9.0e-4073.11Show/hide
Query:  MAYRTISSLLPI-VLVILAMSGEAVAARKVRDRSSIDDKKQPQWLIGYDGVSVFIPGIGRITLSPYDQGT-----GSYSSNSAPRRQYIPGGDDNFIPNP
        MAYRTISSLLPI +++ILA++GEA AAR  R++SSIDDKKQPQWL+GYDGVSV IPGIGRITL PYD+G+     GSY SN A   QYIPGGDDNFIPNP
Subjt:  MAYRTISSLLPI-VLVILAMSGEAVAARKVRDRSSIDDKKQPQWLIGYDGVSVFIPGIGRITLSPYDQGT-----GSYSSNSAPRRQYIPGGDDNFIPNP

Query:  GFEVPIPANISGVEETPYP
        GFEVP PANI  V+ TP+P
Subjt:  GFEVPIPANISGVEETPYP

XP_022970746.1 putative cell wall protein [Cucurbita maxima]1.3e-4174.79Show/hide
Query:  MAYRTISSLLPIVLVILAMSGEAVAARKVRDRSSIDDKKQPQWLIGYDGVSVFIPGIGRITLSPYDQGT------GSYSSNSAPRRQYIPGGDDNFIPNP
        MA RTI+SLL   +VILA++GEAVAAR V +RSSIDDKKQP+W+ G+DGVSV IPGIGR TLSP+D+G+      GSY SN APRRQYIPGGDDNFIPNP
Subjt:  MAYRTISSLLPIVLVILAMSGEAVAARKVRDRSSIDDKKQPQWLIGYDGVSVFIPGIGRITLSPYDQGT------GSYSSNSAPRRQYIPGGDDNFIPNP

Query:  GFEVPIPANISGVEETPYP
        GFEVPIPA ISGV+ETPYP
Subjt:  GFEVPIPANISGVEETPYP

TrEMBL top hitse value%identityAlignment
A0A0A0KCX5 Uncharacterized protein3.8e-2056.64Show/hide
Query:  MAYRTISSLLPIVLVILAMSGEAVAARKVRDRSSIDDKKQPQWLIGYDGVSVFIPGIGRITLSPYDQGTGSYSSNSAPRRQYIPGGDDNFIPNPGFEVPI
        MA+R I S+LPI LVILAM+GEAVA                        VSV IPGIGR+TLS     + SY SN APRRQYIPGGD NFIPNPG+EV I
Subjt:  MAYRTISSLLPIVLVILAMSGEAVAARKVRDRSSIDDKKQPQWLIGYDGVSVFIPGIGRITLSPYDQGTGSYSSNSAPRRQYIPGGDDNFIPNPGFEVPI

Query:  PANISGVEETPYP
         A+I GV+ET YP
Subjt:  PANISGVEETPYP

A0A5D3BC54 Putative cell wall protein1.2e-2660.5Show/hide
Query:  MAYRTISSLLPIVLVILAMSGEAVAARKVRDRSSIDDKKQPQWLIGYDGVSVFIPGIGRITLSPYDQG------TGSYSSNSAPRRQYIPGGDDNFIPNP
        MA+R   SL PI LVILAM+GEAVAAR   +                   SV IPGIGRITLSPYD+G      + SY SN AP+RQYIPGGDDNFIPNP
Subjt:  MAYRTISSLLPIVLVILAMSGEAVAARKVRDRSSIDDKKQPQWLIGYDGVSVFIPGIGRITLSPYDQG------TGSYSSNSAPRRQYIPGGDDNFIPNP

Query:  GFEVPIPANISGVEETPYP
        G+EVPIPANI GV+ET YP
Subjt:  GFEVPIPANISGVEETPYP

A0A6J1CFL0 putative cell wall protein4.3e-4073.11Show/hide
Query:  MAYRTISSLLPI-VLVILAMSGEAVAARKVRDRSSIDDKKQPQWLIGYDGVSVFIPGIGRITLSPYDQGT-----GSYSSNSAPRRQYIPGGDDNFIPNP
        MAYRTISSLLPI +++ILA++GEA AAR  R++SSIDDKKQPQWL+GYDGVSV IPGIGRITL PYD+G+     GSY SN A   QYIPGGDDNFIPNP
Subjt:  MAYRTISSLLPI-VLVILAMSGEAVAARKVRDRSSIDDKKQPQWLIGYDGVSVFIPGIGRITLSPYDQGT-----GSYSSNSAPRRQYIPGGDDNFIPNP

Query:  GFEVPIPANISGVEETPYP
        GFEVP PANI  V+ TP+P
Subjt:  GFEVPIPANISGVEETPYP

A0A6J1I1F6 putative cell wall protein6.1e-4274.79Show/hide
Query:  MAYRTISSLLPIVLVILAMSGEAVAARKVRDRSSIDDKKQPQWLIGYDGVSVFIPGIGRITLSPYDQGT------GSYSSNSAPRRQYIPGGDDNFIPNP
        MA RTI+SLL   +VILA++GEAVAAR V +RSSIDDKKQP+W+ G+DGVSV IPGIGR TLSP+D+G+      GSY SN APRRQYIPGGDDNFIPNP
Subjt:  MAYRTISSLLPIVLVILAMSGEAVAARKVRDRSSIDDKKQPQWLIGYDGVSVFIPGIGRITLSPYDQGT------GSYSSNSAPRRQYIPGGDDNFIPNP

Query:  GFEVPIPANISGVEETPYP
        GFEVPIPA ISGV+ETPYP
Subjt:  GFEVPIPANISGVEETPYP

A0A6J5X0W5 Uncharacterized protein2.1e-1846.92Show/hide
Query:  MAYRTISSLLPIV---LVILAMSGEAVAARKVRDRSSIDDKKQPQWLIGYDGVSVFIPGIGRITLSPY----------DQG----TGSYSSNSAPR--RQ
        MA +T SS LP++   +V+LA++G+AVA R V  +   DDKKQP+W IG+DG S  IPGIGR+ + P           D G    TG   S  AP     
Subjt:  MAYRTISSLLPIV---LVILAMSGEAVAARKVRDRSSIDDKKQPQWLIGYDGVSVFIPGIGRITLSPY----------DQG----TGSYSSNSAPR--RQ

Query:  YIPGGDDNFIPNPGFEVPIPANISGVEETP
        Y+PGGDD F+PNPG+EVP P N +G   TP
Subjt:  YIPGGDDNFIPNPGFEVPIPANISGVEETP

SwissProt top hitse value%identityAlignment
P47925 Putative cell wall protein8.8e-0633.62Show/hide
Query:  SSLLPIVLVILAMSGEAVAA-RKVRDRSSIDDKKQPQWLIGYD-GVSVFIPGIGRITLS--------PYDQGTG---------SYS--SNSAPRRQYIPG
        S+++ +VL ++  S E V+  R V       D K P +L+  +   ++ IPG+GR  L         PY+  TG         SY+    + P  Q +PG
Subjt:  SSLLPIVLVILAMSGEAVAA-RKVRDRSSIDDKKQPQWLIGYD-GVSVFIPGIGRITLS--------PYDQGTG---------SYS--SNSAPRRQYIPG

Query:  GDDNFIPNPGFEVPIP
        GDD  +PNPGFE P P
Subjt:  GDDNFIPNPGFEVPIP

Arabidopsis top hitse value%identityAlignment
AT2G20870.1 cell wall protein precursor, putative6.3e-0733.62Show/hide
Query:  SSLLPIVLVILAMSGEAVAA-RKVRDRSSIDDKKQPQWLIGYD-GVSVFIPGIGRITLS--------PYDQGTG---------SYS--SNSAPRRQYIPG
        S+++ +VL ++  S E V+  R V       D K P +L+  +   ++ IPG+GR  L         PY+  TG         SY+    + P  Q +PG
Subjt:  SSLLPIVLVILAMSGEAVAA-RKVRDRSSIDDKKQPQWLIGYD-GVSVFIPGIGRITLS--------PYDQGTG---------SYS--SNSAPRRQYIPG

Query:  GDDNFIPNPGFEVPIP
        GDD  +PNPGFE P P
Subjt:  GDDNFIPNPGFEVPIP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTACAGAACCATTTCTTCTCTGCTTCCTATCGTCCTCGTGATCCTCGCAATGTCTGGCGAAGCAGTTGCAGCTCGCAAAGTTCGCGACAGGTCCAGCATTGATGA
TAAGAAACAGCCTCAGTGGCTGATTGGATATGATGGGGTGAGTGTGTTCATTCCCGGCATTGGGCGTATCACACTGTCACCATATGACCAAGGCACAGGTTCATATAGTA
GTAACTCAGCTCCAAGACGTCAATATATTCCAGGTGGGGATGATAATTTCATTCCAAATCCTGGATTTGAGGTGCCAATCCCTGCCAATATTAGTGGTGTTGAAGAAACA
CCCTATCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTACAGAACCATTTCTTCTCTGCTTCCTATCGTCCTCGTGATCCTCGCAATGTCTGGCGAAGCAGTTGCAGCTCGCAAAGTTCGCGACAGGTCCAGCATTGATGA
TAAGAAACAGCCTCAGTGGCTGATTGGATATGATGGGGTGAGTGTGTTCATTCCCGGCATTGGGCGTATCACACTGTCACCATATGACCAAGGCACAGGTTCATATAGTA
GTAACTCAGCTCCAAGACGTCAATATATTCCAGGTGGGGATGATAATTTCATTCCAAATCCTGGATTTGAGGTGCCAATCCCTGCCAATATTAGTGGTGTTGAAGAAACA
CCCTATCCTTGA
Protein sequenceShow/hide protein sequence
MAYRTISSLLPIVLVILAMSGEAVAARKVRDRSSIDDKKQPQWLIGYDGVSVFIPGIGRITLSPYDQGTGSYSSNSAPRRQYIPGGDDNFIPNPGFEVPIPANISGVEET
PYP