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Tan0018288 (gene) of Snake gourd v1 genome

Gene IDTan0018288
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationLG01:20552520..20555427
RNA-Seq ExpressionTan0018288
SyntenyTan0018288
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057475.1 uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa]1.7e-2170.27Show/hide
Query:  FQQTRKGNQKMMDYLRVMKCHADNLGQAGSPVWNRALISQVLLGLDEEYNPVVATLQGKPDVQWSDVHNELIVF
        FQ TR+GN KM DYLR+MK +ADNLGQAGSPV +R LISQVLLGLDE YNPV A +QGKPD+ W D+ +EL++F
Subjt:  FQQTRKGNQKMMDYLRVMKCHADNLGQAGSPVWNRALISQVLLGLDEEYNPVVATLQGKPDVQWSDVHNELIVF

KGN65684.1 hypothetical protein Csa_019689 [Cucumis sativus]6.4e-2150.94Show/hide
Query:  LLGLKPRPPMFLQNDDGSGTTSDVTSSSSVEVFQQTRKGNQKMMDYLRVMKCHADNLGQAGSPVWNRALISQVLLGLDEEYNPVVATLQGKPDVQWSDVH
        L+G      M+    D  G  S        + FQ TRKGN  M DYLR+MK +ADNLGQA SP+  RALISQVLLGLDE YNPV+  +QGKP++ W D+ 
Subjt:  LLGLKPRPPMFLQNDDGSGTTSDVTSSSSVEVFQQTRKGNQKMMDYLRVMKCHADNLGQAGSPVWNRALISQVLLGLDEEYNPVVATLQGKPDVQWSDVH

Query:  NELIVF
        ++L++F
Subjt:  NELIVF

XP_022148963.1 uncharacterized protein LOC111017501 [Momordica charantia]6.4e-2165.48Show/hide
Query:  GTTSDVTSSSSVEVFQQTRKGNQKMMDYLRVMKCHADNLGQAGSPVWNRALISQVLLGLDEEYNPVVATLQGKPDVQWSDVHNE
        G  S        +VFQQTRKG+ KM D+LRVMK HADNLGQAGSPV  R+LISQVLLGLDEEYNPVVAT+QGK  + W ++  E
Subjt:  GTTSDVTSSSSVEVFQQTRKGNQKMMDYLRVMKCHADNLGQAGSPVWNRALISQVLLGLDEEYNPVVATLQGKPDVQWSDVHNE

XP_038896600.1 uncharacterized protein LOC120084860 [Benincasa hispida]1.7e-1861.84Show/hide
Query:  EVFQQTRKGNQKMMDYLRVMKCHADNLGQAGSPVWNRALISQVLLGLDEEYNPVVATLQGKPDVQWSDVHNELIVF
        ++FQQTRKG QKM  YL++MK H+DNL Q  SPV  R LISQVLLGLDEEYN VV  +QGKP + W D+ +EL+ +
Subjt:  EVFQQTRKGNQKMMDYLRVMKCHADNLGQAGSPVWNRALISQVLLGLDEEYNPVVATLQGKPDVQWSDVHNELIVF

XP_038902487.1 uncharacterized protein LOC120089143 [Benincasa hispida]2.7e-1963.16Show/hide
Query:  EVFQQTRKGNQKMMDYLRVMKCHADNLGQAGSPVWNRALISQVLLGLDEEYNPVVATLQGKPDVQWSDVHNELIVF
        +VFQQT KG  KM +YLRVMK H+DNLG  GSPV  RAL+SQVLLGLDEE+NP VAT+QG+ ++ W+++  EL+ F
Subjt:  EVFQQTRKGNQKMMDYLRVMKCHADNLGQAGSPVWNRALISQVLLGLDEEYNPVVATLQGKPDVQWSDVHNELIVF

TrEMBL top hitse value%identityAlignment
A0A0A0LXB7 Uncharacterized protein3.1e-2150.94Show/hide
Query:  LLGLKPRPPMFLQNDDGSGTTSDVTSSSSVEVFQQTRKGNQKMMDYLRVMKCHADNLGQAGSPVWNRALISQVLLGLDEEYNPVVATLQGKPDVQWSDVH
        L+G      M+    D  G  S        + FQ TRKGN  M DYLR+MK +ADNLGQA SP+  RALISQVLLGLDE YNPV+  +QGKP++ W D+ 
Subjt:  LLGLKPRPPMFLQNDDGSGTTSDVTSSSSVEVFQQTRKGNQKMMDYLRVMKCHADNLGQAGSPVWNRALISQVLLGLDEEYNPVVATLQGKPDVQWSDVH

Query:  NELIVF
        ++L++F
Subjt:  NELIVF

A0A5A7SIT7 Uncharacterized protein8.4e-1949.06Show/hide
Query:  LLGLKPRPPMFLQNDDGSGTTSDVTSSSSVEVFQQTRKGNQKMMDYLRVMKCHADNLGQAGSPVWNRALISQVLLGLDEEYNPVVATLQGKPDVQWSDVH
        L+G      ++    D  G  S        ++ Q TRKGN KM +YL VMK + DNLGQ GSPV  RALISQVLLGLDE YN V+  +QGKPD+ W D+ 
Subjt:  LLGLKPRPPMFLQNDDGSGTTSDVTSSSSVEVFQQTRKGNQKMMDYLRVMKCHADNLGQAGSPVWNRALISQVLLGLDEEYNPVVATLQGKPDVQWSDVH

Query:  NELIVF
        ++L++F
Subjt:  NELIVF

A0A5D3C373 Retrovirus-related Pol polyprotein from transposon TNT 1-944.2e-1847.17Show/hide
Query:  LLGLKPRPPMFLQNDDGSGTTSDVTSSSSVEVFQQTRKGNQKMMDYLRVMKCHADNLGQAGSPVWNRALISQVLLGLDEEYNPVVATLQGKPDVQWSDVH
        L+G      ++    D  G  S        ++FQ TRK      DYLR+MK ++D LGQAGSPV  RA ISQ LLGLDE YNPV+A +QGKP++ W D+ 
Subjt:  LLGLKPRPPMFLQNDDGSGTTSDVTSSSSVEVFQQTRKGNQKMMDYLRVMKCHADNLGQAGSPVWNRALISQVLLGLDEEYNPVVATLQGKPDVQWSDVH

Query:  NELIVF
        +EL+ F
Subjt:  NELIVF

A0A5D3E3L7 Uncharacterized protein8.2e-2270.27Show/hide
Query:  FQQTRKGNQKMMDYLRVMKCHADNLGQAGSPVWNRALISQVLLGLDEEYNPVVATLQGKPDVQWSDVHNELIVF
        FQ TR+GN KM DYLR+MK +ADNLGQAGSPV +R LISQVLLGLDE YNPV A +QGKPD+ W D+ +EL++F
Subjt:  FQQTRKGNQKMMDYLRVMKCHADNLGQAGSPVWNRALISQVLLGLDEEYNPVVATLQGKPDVQWSDVHNELIVF

A0A6J1D5J0 uncharacterized protein LOC1110175013.1e-2165.48Show/hide
Query:  GTTSDVTSSSSVEVFQQTRKGNQKMMDYLRVMKCHADNLGQAGSPVWNRALISQVLLGLDEEYNPVVATLQGKPDVQWSDVHNE
        G  S        +VFQQTRKG+ KM D+LRVMK HADNLGQAGSPV  R+LISQVLLGLDEEYNPVVAT+QGK  + W ++  E
Subjt:  GTTSDVTSSSSVEVFQQTRKGNQKMMDYLRVMKCHADNLGQAGSPVWNRALISQVLLGLDEEYNPVVATLQGKPDVQWSDVHNE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTTTTAACTTCCTCCTTAATAAATGCTTGCATCAATCGCAAATTCATATCTATAACTTTTTTTGATATAATTTTCGTAATCCTTTCAAAATCCTCCAATAAAGG
ATCTGGATCAGATGATAAAGGCCCAACAAGACATGCCAGTGAGCCCAACAAAGGTGGCCCATCAAAACCATTCTATAAACTGGAAGGCCATCTCCTCGGGTTAAAACCGC
GCCCTCCAATGTTTCTACAGAATGATGATGGGTCTGGAACAACAAGCGATGTAACATCATCCTCGTCTGTTGAAGTATTTCAGCAAACCAGAAAAGGCAATCAGAAGATG
ATGGACTATCTTCGCGTAATGAAATGCCACGCCGACAACTTAGGACAAGCTGGAAGTCCAGTGTGGAATAGAGCCCTAATTTCTCAAGTTCTTCTTGGCCTAGATGAGGA
ATACAACCCAGTGGTGGCTACCCTTCAAGGTAAGCCTGATGTTCAATGGTCTGATGTTCATAATGAACTCATTGTTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGTTTTAACTTCCTCCTTAATAAATGCTTGCATCAATCGCAAATTCATATCTATAACTTTTTTTGATATAATTTTCGTAATCCTTTCAAAATCCTCCAATAAAGG
ATCTGGATCAGATGATAAAGGCCCAACAAGACATGCCAGTGAGCCCAACAAAGGTGGCCCATCAAAACCATTCTATAAACTGGAAGGCCATCTCCTCGGGTTAAAACCGC
GCCCTCCAATGTTTCTACAGAATGATGATGGGTCTGGAACAACAAGCGATGTAACATCATCCTCGTCTGTTGAAGTATTTCAGCAAACCAGAAAAGGCAATCAGAAGATG
ATGGACTATCTTCGCGTAATGAAATGCCACGCCGACAACTTAGGACAAGCTGGAAGTCCAGTGTGGAATAGAGCCCTAATTTCTCAAGTTCTTCTTGGCCTAGATGAGGA
ATACAACCCAGTGGTGGCTACCCTTCAAGGTAAGCCTGATGTTCAATGGTCTGATGTTCATAATGAACTCATTGTTTTTTAA
Protein sequenceShow/hide protein sequence
MVVLTSSLINACINRKFISITFFDIIFVILSKSSNKGSGSDDKGPTRHASEPNKGGPSKPFYKLEGHLLGLKPRPPMFLQNDDGSGTTSDVTSSSSVEVFQQTRKGNQKM
MDYLRVMKCHADNLGQAGSPVWNRALISQVLLGLDEEYNPVVATLQGKPDVQWSDVHNELIVF