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Tan0018293 (gene) of Snake gourd v1 genome

Gene IDTan0018293
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibosomal protein L37
Genome locationLG04:85979107..85980514
RNA-Seq ExpressionTan0018293
SyntenyTan0018293
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001569 - Ribosomal protein L37e
IPR011331 - Ribosomal protein L37ae/L37e
IPR011332 - Zinc-binding ribosomal protein
IPR018267 - Ribosomal protein L37e, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141772.1 60S ribosomal protein L37-3 [Cucumis sativus]3.9e-4497.89Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT+AAPR+KGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA

XP_016171857.1 60S ribosomal protein L37-3 [Arachis ipaensis]1.1e-4396.84Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT+AAPR KGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA

XP_021609554.1 60S ribosomal protein L37-3 [Manihot esculenta]6.6e-4497.89Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPR KGAA SA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA

XP_022150495.1 60S ribosomal protein L37-3 [Momordica charantia]6.6e-4496.84Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKRKYNWSVKAIRRKTTGTGRMRY+RHVPRRFKSGFREGT+AAPRSKGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA

XP_038902074.1 60S ribosomal protein L37-3 [Benincasa hispida]3.9e-4497.89Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT+AAPRSKGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA

TrEMBL top hitse value%identityAlignment
A0A0A0K941 Ribosomal protein L371.9e-4497.89Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT+AAPR+KGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA

A0A1S3CGU0 Ribosomal protein L371.9e-4497.89Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT+AAPR+KGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA

A0A251LJK8 Ribosomal protein L373.2e-4497.89Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPR KGAA SA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA

A0A5D3BYC5 Ribosomal protein L371.9e-4497.89Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT+AAPR+KGAAASA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA

A0A6A6LIP3 Ribosomal protein L373.2e-4497.89Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA
        MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPR KGAA SA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA

SwissProt top hitse value%identityAlignment
Q43292 60S ribosomal protein L37-21.9e-4186.32Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA
        M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTGTGRMRYLR+VPRRFK+GFREGT+A PR+KG A+SA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA

Q8LEM8 60S ribosomal protein L37-33.8e-4287.37Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA
        MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTGTGRMRYLR+VPRRFK+GFREGT+A PRSK +A+SA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA

Q8LFH7 60S ribosomal protein L37-13.2e-4186.32Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA
        MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTGTGRMRYLR+VPRRFK+ FREGTQA PR+K AA+S+
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA

Q90YT1 60S ribosomal protein L372.1e-2967.37Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA
        M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C +PA RKRKYNWS KA RR TTGTGRMR+++ V RRF++GFREGT   PR    AAS+
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA

Q9VXX8 Probable 60S ribosomal protein L37-A7.3e-3069.57Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAA
        M KGT SFGKR NKTHTLC RCGR S+H+QKS CA C +PAA+ R YNWSVKA RRKTTGTGRM++L+ V RRF++GFREGTQA P+   A+
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAA

Arabidopsis top hitse value%identityAlignment
AT1G15250.1 Zinc-binding ribosomal protein family protein2.3e-4286.32Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA
        MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTGTGRMRYLR+VPRRFK+ FREGTQA PR+K AA+S+
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA

AT1G52300.1 Zinc-binding ribosomal protein family protein1.3e-4286.32Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA
        M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTGTGRMRYLR+VPRRFK+GFREGT+A PR+KG A+SA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA

AT3G16080.1 Zinc-binding ribosomal protein family protein2.7e-4387.37Show/hide
Query:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA
        MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSVKAIRRKTTGTGRMRYLR+VPRRFK+GFREGT+A PRSK +A+SA
Subjt:  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAAGGGAACGGGAAGTTTCGGTAAGAGGAGGAACAAGACCCACACTCTCTGTGTTAGGTGTGGCCGCCGCAGCTTCCACCTGCAGAAGAGTCGATGCGCCGCCTG
CGCATTTCCGGCCGCCCGTAAGCGAAAATATAACTGGAGCGTGAAGGCGATTAGGAGGAAGACCACTGGAACTGGACGGATGAGATACTTGCGCCATGTTCCCCGCAGAT
TTAAGAGTGGTTTCAGAGAAGGTACTCAAGCTGCGCCAAGGAGCAAGGGAGCAGCAGCATCAGCCTAA
mRNA sequenceShow/hide mRNA sequence
TTTCTTCAAACCCTTCAAACCCTAAACCCTCGCAATATAAAGCCTGCCGCTTACTTCTCAGCCCTCTTTGGACGGAAGAAGAATCCGAAGGCTTCGTCGTTGAATTCGAT
TAAATGGGTAAGGGAACGGGAAGTTTCGGTAAGAGGAGGAACAAGACCCACACTCTCTGTGTTAGGTGTGGCCGCCGCAGCTTCCACCTGCAGAAGAGTCGATGCGCCGC
CTGCGCATTTCCGGCCGCCCGTAAGCGAAAATATAACTGGAGCGTGAAGGCGATTAGGAGGAAGACCACTGGAACTGGACGGATGAGATACTTGCGCCATGTTCCCCGCA
GATTTAAGAGTGGTTTCAGAGAAGGTACTCAAGCTGCGCCAAGGAGCAAGGGAGCAGCAGCATCAGCCTAAAACATTGAAGGTTAATTGTGGCACAACTTTGGTACCCTA
TTGTAGCTTCTAGGAGGATTTTGTCATTTTTGGATCAGAATCTATATGAATTTTGTTTGATTATGTTATTGCCTTCAATACTGAAGCTCATTTTTATTTCTTACTATTTG
GTTTATGGAATTTCTTATGATTGGATTCAGACTACTTTCACCTTTGTTTAATCTATGACTTGAGTTATATACTTCTAACCATTTTATGAGGTTTTTGCTGGTAGATATTA
TCACCCTGAAGGCTGGGGCCTGGGGTAGAATCTATTAGTAAGAAATATGGATGTTAAGATCATGTGTTAATGTTTGAATTGTTCCTTAATCCGGGCCTCAATTTGGCATG
TTAGTCAATTTTTATTATTTATTTTTCTCCCTTGACCATGATTAGGGTTGATAATCCTGAAAAAAACAGAGTGAAATTTTATTTGACGTGTCAATATTGTGACTTGTTGA
GGCAGAATAGGCGGGCTTTGCAACAACGTTGCAAGTTGCTATTCTTTTTGCGGATTGTTGATGATAGGGG
Protein sequenceShow/hide protein sequence
MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRSKGAAASA