; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0018299 (gene) of Snake gourd v1 genome

Gene IDTan0018299
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationLG05:6308390..6310538
RNA-Seq ExpressionTan0018299
SyntenyTan0018299
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.0e-3142.7Show/hide
Query:  LSEGLKNTNKYMLSIFKVLSLVYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPS
        +   L +   Y LSIFK       NIEK  RN LW+        HLV W  +T P E+GGLG  RLKDT  ALL KWLWR+  E   LWK+II A+Y   
Subjt:  LSEGLKNTNKYMLSIFKVLSLVYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPS

Query:  SPEGLPDICKHNSSKSRWHNIIKFKNFFTSNVRRKIQSGVSNLFWHHNWTNSGTFKHIFLRFYALSSNKLLTISNAWN
        S   +P +C H+SS+S W +I K   +F  +V  KI++G S  FWH +W  +      + R +ALS+NK  +I + WN
Subjt:  SPEGLPDICKHNSSKSRWHNIIKFKNFFTSNVRRKIQSGVSNLFWHHNWTNSGTFKHIFLRFYALSSNKLLTISNAWN

KAA0048676.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.0e-3242.13Show/hide
Query:  LSEGLKNTNKYMLSIFKVLSLVYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPS
        +   L++   Y LSIFK  + +Y +I+K  RN LW      +  HL+ W I TLP ++GGLG  R+K +  ALL KWL  ++ E ++LWK II A+YS +
Subjt:  LSEGLKNTNKYMLSIFKVLSLVYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPS

Query:  SPEGLPDICKHNSSKSRWHNIIKFKNFFTSNVRRKIQSGVSNLFWHHNWTNSGTFKHIFLRFYALSSNKLLTISNAWN
           G+P   K++SS + W +IIK K++F S +  KI SG S+ FWH NW NS +      R YALSS K  T+   W+
Subjt:  SPEGLPDICKHNSSKSRWHNIIKFKNFFTSNVRRKIQSGVSNLFWHHNWTNSGTFKHIFLRFYALSSNKLLTISNAWN

KAA0056839.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.7e-3140.45Show/hide
Query:  LSEGLKNTNKYMLSIFKVLSLVYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPS
        L   L +   Y LS FK    VY  IEK  R+ LW G++ K  AHL+ W+I T P E GGLG  ++KDT  ALLCKWLWR++ E +SLWK+ I A+Y+ +
Subjt:  LSEGLKNTNKYMLSIFKVLSLVYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPS

Query:  SPEGLPDICKHNSSKSRWHNIIKFKNFFTSNVRRKIQSGVSNLFWHHNWTNSGTFKHIFLRFYALSSNKLLTISNAWN
            +P + +++S+ S W+ I K+K+++ S +      G S  FWH  W N+      F R YALS+ +  T+   W+
Subjt:  SPEGLPDICKHNSSKSRWHNIIKFKNFFTSNVRRKIQSGVSNLFWHHNWTNSGTFKHIFLRFYALSSNKLLTISNAWN

TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.0e-3243.45Show/hide
Query:  YMLSIFKVLSLVYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPSSPEGLPDICK
        Y LS+F+  S  Y NIEK  RN LW+G+    G+HL+ W IVT P E+GGLG  RL+ T  ALL KWLWR+Y+E +SLW+R+I  +Y    P  LP    
Subjt:  YMLSIFKVLSLVYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPSSPEGLPDICK

Query:  HNSSKSRWHNIIKFKNFFTSNVRRKIQSGVSNLFWHHNWTNSGTFKHIFLRFYALSSNKLLTISNAWN
         +SSK+ W +II   ++F SN    + +G    FW+ NW+  G     + R +ALS +K  +I + WN
Subjt:  HNSSKSRWHNIIKFKNFFTSNVRRKIQSGVSNLFWHHNWTNSGTFKHIFLRFYALSSNKLLTISNAWN

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]2.3e-3143.26Show/hide
Query:  LSEGLKNTNKYMLSIFKVLSLVYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPS
        +   L +   Y LSIFKV      NIEK  RN LW+        HLV W  +T   E+GGLG  RLKDT  ALL KWLWR+  E   LWK+II A+Y   
Subjt:  LSEGLKNTNKYMLSIFKVLSLVYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPS

Query:  SPEGLPDICKHNSSKSRWHNIIKFKNFFTSNVRRKIQSGVSNLFWHHNWTNSGTFKHIFLRFYALSSNKLLTISNAWN
        S   +P +C H+SS+S W +I K   +F  +V  KI++G S  FWH +W  +      + R YALS+NK  +I + WN
Subjt:  SPEGLPDICKHNSSKSRWHNIIKFKNFFTSNVRRKIQSGVSNLFWHHNWTNSGTFKHIFLRFYALSSNKLLTISNAWN

TrEMBL top hitse value%identityAlignment
A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein1.1e-3143.26Show/hide
Query:  LSEGLKNTNKYMLSIFKVLSLVYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPS
        +   L +   Y LSIFKV      NIEK  RN LW+        HLV W  +T   E+GGLG  RLKDT  ALL KWLWR+  E   LWK+II A+Y   
Subjt:  LSEGLKNTNKYMLSIFKVLSLVYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPS

Query:  SPEGLPDICKHNSSKSRWHNIIKFKNFFTSNVRRKIQSGVSNLFWHHNWTNSGTFKHIFLRFYALSSNKLLTISNAWN
        S   +P +C H+SS+S W +I K   +F  +V  KI++G S  FWH +W  +      + R YALS+NK  +I + WN
Subjt:  SPEGLPDICKHNSSKSRWHNIIKFKNFFTSNVRRKIQSGVSNLFWHHNWTNSGTFKHIFLRFYALSSNKLLTISNAWN

A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein1.4e-3142.7Show/hide
Query:  LSEGLKNTNKYMLSIFKVLSLVYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPS
        +   L +   Y LSIFK       NIEK  RN LW+        HLV W  +T P E+GGLG  RLKDT  ALL KWLWR+  E   LWK+II A+Y   
Subjt:  LSEGLKNTNKYMLSIFKVLSLVYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPS

Query:  SPEGLPDICKHNSSKSRWHNIIKFKNFFTSNVRRKIQSGVSNLFWHHNWTNSGTFKHIFLRFYALSSNKLLTISNAWN
        S   +P +C H+SS+S W +I K   +F  +V  KI++G S  FWH +W  +      + R +ALS+NK  +I + WN
Subjt:  SPEGLPDICKHNSSKSRWHNIIKFKNFFTSNVRRKIQSGVSNLFWHHNWTNSGTFKHIFLRFYALSSNKLLTISNAWN

A0A5A7U366 LINE-1 retrotransposable element ORF2 protein2.9e-3242.13Show/hide
Query:  LSEGLKNTNKYMLSIFKVLSLVYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPS
        +   L++   Y LSIFK  + +Y +I+K  RN LW      +  HL+ W I TLP ++GGLG  R+K +  ALL KWL  ++ E ++LWK II A+YS +
Subjt:  LSEGLKNTNKYMLSIFKVLSLVYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPS

Query:  SPEGLPDICKHNSSKSRWHNIIKFKNFFTSNVRRKIQSGVSNLFWHHNWTNSGTFKHIFLRFYALSSNKLLTISNAWN
           G+P   K++SS + W +IIK K++F S +  KI SG S+ FWH NW NS +      R YALSS K  T+   W+
Subjt:  SPEGLPDICKHNSSKSRWHNIIKFKNFFTSNVRRKIQSGVSNLFWHHNWTNSGTFKHIFLRFYALSSNKLLTISNAWN

A0A5A7UTI6 LINE-1 retrotransposable element ORF2 protein8.5e-3240.45Show/hide
Query:  LSEGLKNTNKYMLSIFKVLSLVYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPS
        L   L +   Y LS FK    VY  IEK  R+ LW G++ K  AHL+ W+I T P E GGLG  ++KDT  ALLCKWLWR++ E +SLWK+ I A+Y+ +
Subjt:  LSEGLKNTNKYMLSIFKVLSLVYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPS

Query:  SPEGLPDICKHNSSKSRWHNIIKFKNFFTSNVRRKIQSGVSNLFWHHNWTNSGTFKHIFLRFYALSSNKLLTISNAWN
            +P + +++S+ S W+ I K+K+++ S +      G S  FWH  W N+      F R YALS+ +  T+   W+
Subjt:  SPEGLPDICKHNSSKSRWHNIIKFKNFFTSNVRRKIQSGVSNLFWHHNWTNSGTFKHIFLRFYALSSNKLLTISNAWN

A0A5D3BL61 LINE-1 retrotransposable element ORF2 protein2.9e-3243.45Show/hide
Query:  YMLSIFKVLSLVYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPSSPEGLPDICK
        Y LS+F+  S  Y NIEK  RN LW+G+    G+HL+ W IVT P E+GGLG  RL+ T  ALL KWLWR+Y+E +SLW+R+I  +Y    P  LP    
Subjt:  YMLSIFKVLSLVYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPSSPEGLPDICK

Query:  HNSSKSRWHNIIKFKNFFTSNVRRKIQSGVSNLFWHHNWTNSGTFKHIFLRFYALSSNKLLTISNAWN
         +SSK+ W +II   ++F SN    + +G    FW+ NW+  G     + R +ALS +K  +I + WN
Subjt:  HNSSKSRWHNIIKFKNFFTSNVRRKIQSGVSNLFWHHNWTNSGTFKHIFLRFYALSSNKLLTISNAWN

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657507.4e-0929.01Show/hide
Query:  VYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPSSPEGLPDICKHNSSKSRWHNI
        + N +++  R  LW  T  K   HLV+W  V  P ++GGLG    K    AL+ K  WR   E +SLW  ++Q +Y          +    S  S W +I
Subjt:  VYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLG--RLKDTKLALLCKWLWRFYTEGDSLWKRIIQARYSPSSPEGLPDICKHNSSKSRWHNI

Query:  -IKFKNFFTSNVRRKIQSGVSNLFWHHNWTN
         I  ++  +  V      G    FW   W +
Subjt:  -IKFKNFFTSNVRRKIQSGVSNLFWHHNWTN

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATTTGTTAGTGTTTTTCAGAGCCTCCAAGATCTTGTCCCAATCATCGTGGAAGAAGCGACGAGTAAGAACGATCATATTATCCCAGGTAAAAACATCTTCTTCAAT
CTGTGAATCGCTTTTCTTGTCTGAGGGTTTGAAAAACACTAACAAATATATGCTATCTATTTTTAAGGTCCTTAGTTTGGTCTATAATAACATAGAGAAGTTTATGCGTA
ATGTTCTATGGGAGGGTACCGATCTCAAAAGTGGTGCTCACCTTGTTCGTTGGGATATTGTGACCCTTCCAACAGAGCAAGGTGGTCTTGGTCGTTTAAAAGACACTAAG
TTAGCTTTACTTTGCAAATGGCTATGGCGGTTTTATACGGAGGGTGATAGTTTGTGGAAGAGGATAATACAAGCGCGTTATTCACCAAGCTCCCCCGAGGGTCTGCCCGA
TATATGTAAACACAATAGCTCCAAATCCCGTTGGCACAATATCATCAAATTCAAGAACTTTTTCACGAGCAACGTTCGTAGGAAAATTCAAAGTGGAGTTTCAAATTTAT
TTTGGCATCACAATTGGACCAATTCTGGCACGTTCAAACATATTTTTCTTCGTTTTTATGCTTTATCATCTAATAAGCTTCTTACTATTTCAAATGCATGGAACGTTCAT
TAG
mRNA sequenceShow/hide mRNA sequence
GTCTGACAGTACTCTTCTCTTTCTCTATGTAACGAAGTCGTATGAACTCTGGGTTATTACTCGTTTTTTGCAAACCAGAGGTTGATCGGTAGTTGTCCTTAGCTGTCAGA
GAGCTCGATGTGGAGGTCTGAGGGATATCATGGAAGCTGAAAGAAGGAGGTGGAGGGTACGCAAACTGACCTCGAAAGAAATAACTTTCTAAAAAGGGATTTGTTGCATC
GAAAACTGTAGCCGCTTCTCGAGAAAAGGTACCTGTAACAAAGGGTTTCTACCGACAAGCCATTCGTCGTTCGTCAGAGTAGTCATTTGGACGGTGTAGTGGGTGCCTTC
ATCGTCCTTGATATTGATCGAAGCTGGGATAAAACCACGGAATTTCCAATGATTTGAAAGGTTTGTTGATTCCAGAGATGTAATGGAATGCCCCTGAAGCTTAACCACCC
TCCATAGCTCTCAATAAGAAGAGACAGGAGTAATCGAGCTTGATCTGAATCCCTTATCGAGATGAGAGCACGGTCTGCCTGAAACGGATTAAAAGAAGCAATGTATTTGT
TAGTGTTTTTCAGAGCCTCCAAGATCTTGTCCCAATCATCGTGGAAGAAGCGACGAGTAAGAACGATCATATTATCCCAGGTAAAAACATCTTCTTCAATCTGTGAATCG
CTTTTCTTGTCTGAGGGTTTGAAAAACACTAACAAATATATGCTATCTATTTTTAAGGTCCTTAGTTTGGTCTATAATAACATAGAGAAGTTTATGCGTAATGTTCTATG
GGAGGGTACCGATCTCAAAAGTGGTGCTCACCTTGTTCGTTGGGATATTGTGACCCTTCCAACAGAGCAAGGTGGTCTTGGTCGTTTAAAAGACACTAAGTTAGCTTTAC
TTTGCAAATGGCTATGGCGGTTTTATACGGAGGGTGATAGTTTGTGGAAGAGGATAATACAAGCGCGTTATTCACCAAGCTCCCCCGAGGGTCTGCCCGATATATGTAAA
CACAATAGCTCCAAATCCCGTTGGCACAATATCATCAAATTCAAGAACTTTTTCACGAGCAACGTTCGTAGGAAAATTCAAAGTGGAGTTTCAAATTTATTTTGGCATCA
CAATTGGACCAATTCTGGCACGTTCAAACATATTTTTCTTCGTTTTTATGCTTTATCATCTAATAAGCTTCTTACTATTTCAAATGCATGGAACGTTCATTAGAGAACTT
GGGATTTTCTCCTTAGAAAACCCCATTTTGAACGAGAAGAGGTTGTGTGGACTAGCATATCCATTCTGATTGGGATCCACCCTCAAGCAGTGAGGGCAAGGACATGCTAA
AATGGATGGGAAGCAACAATGGATTATTTTCGGTTGGCTCTACGAAATCTCTTCTTCGAAATCCATCACAATCTTTTCATGAGCTCTCAAACATATGAGAACTTTTTCTC
CCCAAGAAATGTAAGTTCTTTGTATGGACCTTAAAGCACAGAGGGATTAATACTGCAGATGTTCTACAAAAGTGCCTTCCTAACCATTGTTTGCGCCCAAGTGTTTGTGT
TCTTTGTTTTGGTAGTGACGAGACTATCAATCATCTGTTCCTCCATTTGTCCCTATGTCGTTTCTCTTTGGCGCCTCTGGAGTGACGGTACTAAGCAACCCATCCCAACT
TACGATAGACTTGACTGTTTTCTCAAATATGCTATGAAGATCAACCACAAAGCGATTAGCCAAATCCTTTATTCAAATCTTATTGGTGCTATTATGTGGTGTGTTTGGTT
GTAAAGAAATGATCGGTTTTTTAACAATAAAGTTACTGCAGCGTCTATTCTTTTTTAAGACGTTTTTACTCTTGCAGTTTCTTGGAGTTATAGATCCTCGTCTTTTGGTG
ATTGCGATTTCACTACTATCGCTCTAAATTGGCGAGTCTTCTTTTGAACGTTTTTGACCCATTGTATTAGGATTGCTTTGTTTTGTTCCTCTCTCTTATCTGTTGTCTTT
TTGCTTGGG
Protein sequenceShow/hide protein sequence
MYLLVFFRASKILSQSSWKKRRVRTIILSQVKTSSSICESLFLSEGLKNTNKYMLSIFKVLSLVYNNIEKFMRNVLWEGTDLKSGAHLVRWDIVTLPTEQGGLGRLKDTK
LALLCKWLWRFYTEGDSLWKRIIQARYSPSSPEGLPDICKHNSSKSRWHNIIKFKNFFTSNVRRKIQSGVSNLFWHHNWTNSGTFKHIFLRFYALSSNKLLTISNAWNVH