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Tan0018309 (gene) of Snake gourd v1 genome

Gene IDTan0018309
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionprotein LOL2
Genome locationLG05:84843929..84847743
RNA-Seq ExpressionTan0018309
SyntenyTan0018309
Gene Ontology termsGO:0009617 - response to bacterium (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146601.1 protein LOL2 isoform X2 [Cucumis sativus]2.8e-6192.19Show/hide
Query:  MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        M+ HEIEKDEDDGPPPGWEPITP LP PPPP LSSDMAQMVCG+CRRLLKYLKGAR+VQCSCC TVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTN
        CTSVTEIGVHNRRPPWSV QGQAAPPTN
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTN

XP_011653178.1 protein LOL2 isoform X1 [Cucumis sativus]6.9e-6091.47Show/hide
Query:  MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSS-DMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
        M+ HEIEKDEDDGPPPGWEPITP LP PPPP LSS DMAQMVCG+CRRLLKYLKGAR+VQCSCC TVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
Subjt:  MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSS-DMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS

Query:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTN
        SCTSVTEIGVHNRRPPWSV QGQAAPPTN
Subjt:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTN

XP_022140183.1 protein LOL2 [Momordica charantia]2.1e-6190.7Show/hide
Query:  MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        ME  EI+ DEDDGPPPGWEPITPP PPPPPPPLSSDMAQMVCGSCRRLLKYLKGAR+V+CSCC TVNYVLEA EVGQVKCGSCA+LLMYPYGASSVRCSS
Subjt:  MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNV
        CT+VTEIGVHNRRPPWSVQQGQA PPTNV
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNV

XP_022927005.1 protein LOL2 [Cucurbita moschata]3.0e-6394.53Show/hide
Query:  MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        ME HEIEKDEDDGPPPGWEPITPPLP PPP PLSSDMAQMVCG+CRRLLKYLKGAR+VQCSCC TVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTN
        CT VTEIGVHNRRPPWSVQQGQAAPPTN
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTN

XP_023001758.1 protein LOL2 [Cucurbita maxima]2.5e-6293.75Show/hide
Query:  MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        ME HEIEKDEDDGPPPGWEPITPPLP  PP PLSSDMAQMVCG+CRRLLKYLKGAR+VQCSCC TVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTN
        CT VTEIGVHNRRPPWSVQQGQAAPPTN
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTN

TrEMBL top hitse value%identityAlignment
A0A0A0LXE3 Uncharacterized protein1.4e-6192.19Show/hide
Query:  MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        M+ HEIEKDEDDGPPPGWEPITP LP PPPP LSSDMAQMVCG+CRRLLKYLKGAR+VQCSCC TVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTN
        CTSVTEIGVHNRRPPWSV QGQAAPPTN
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTN

A0A5A7UQS3 Protein LOL2 isoform X42.2e-5990.62Show/hide
Query:  MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        M+ HEIEKDEDDGPPPGWEPITP LP PP P LS DMAQMVCG+CRRLLKYLKGAR+VQCS C TVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTN
        CTSVTEIGVHNRRPPWSVQQGQAAPPTN
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTN

A0A6J1CHF4 protein LOL21.0e-6190.7Show/hide
Query:  MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        ME  EI+ DEDDGPPPGWEPITPP PPPPPPPLSSDMAQMVCGSCRRLLKYLKGAR+V+CSCC TVNYVLEA EVGQVKCGSCA+LLMYPYGASSVRCSS
Subjt:  MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNV
        CT+VTEIGVHNRRPPWSVQQGQA PPTNV
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNV

A0A6J1EMN3 protein LOL21.4e-6394.53Show/hide
Query:  MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        ME HEIEKDEDDGPPPGWEPITPPLP PPP PLSSDMAQMVCG+CRRLLKYLKGAR+VQCSCC TVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTN
        CT VTEIGVHNRRPPWSVQQGQAAPPTN
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTN

A0A6J1KRG9 protein LOL21.2e-6293.75Show/hide
Query:  MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        ME HEIEKDEDDGPPPGWEPITPPLP  PP PLSSDMAQMVCG+CRRLLKYLKGAR+VQCSCC TVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTN
        CT VTEIGVHNRRPPWSVQQGQAAPPTN
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTN

SwissProt top hitse value%identityAlignment
O65426 Protein LOL22.6e-3357.94Show/hide
Query:  EIEKDEDDGPPPGWEPITPPLP---------PPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASS
        E E++E++GPPPGWE    P P         P P      + AQMVCGSCRRLL YL+G++ V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +
Subjt:  EIEKDEDDGPPPGWEPITPPLP---------PPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASS

Query:  VRCSSCTSVTEIGVHNRRPPWSVQQG
        VRCSSC SVT+I  +N+RPPWS QQG
Subjt:  VRCSSCTSVTEIGVHNRRPPWSVQQG

P94077 Protein LSD17.2e-2045.54Show/hide
Query:  PPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWS
        PPPPPP   DMA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P  
Subjt:  PPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWS

Query:  VQQ--GQAAPPT
          +  G A PP+
Subjt:  VQQ--GQAAPPT

Q0J7V9 Protein LSD13.2e-2055.13Show/hide
Query:  PPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        P   ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  +EA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

Q704V3 Protein LOL54.2e-2858.1Show/hide
Query:  PGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPP
        P  +   P +PPPP P L+ ++ QMVCGSCR LL Y +GA +V C+CC T+NYVLEAHEVG+V CG CA LLMYP+GA +V+CS C  VTEIG  N R  
Subjt:  PGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPP

Query:  WSVQQ
         S++Q
Subjt:  WSVQQ

Q93ZB1 Protein LOL12.2e-2157.69Show/hide
Query:  PPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        PP  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 11.6e-2257.69Show/hide
Query:  PPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        PP  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

AT1G32540.2 lsd one like 11.6e-2257.69Show/hide
Query:  PPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        PP  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

AT1G32540.3 lsd one like 11.6e-2257.69Show/hide
Query:  PPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        PP  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

AT4G20380.2 LSD1 zinc finger family protein5.1e-2145.54Show/hide
Query:  PPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWS
        PPPPPP   DMA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P  
Subjt:  PPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWS

Query:  VQQ--GQAAPPT
          +  G A PP+
Subjt:  VQQ--GQAAPPT

AT4G21610.1 lsd one like 21.8e-3457.94Show/hide
Query:  EIEKDEDDGPPPGWEPITPPLP---------PPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASS
        E E++E++GPPPGWE    P P         P P      + AQMVCGSCRRLL YL+G++ V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +
Subjt:  EIEKDEDDGPPPGWEPITPPLP---------PPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASS

Query:  VRCSSCTSVTEIGVHNRRPPWSVQQG
        VRCSSC SVT+I  +N+RPPWS QQG
Subjt:  VRCSSCTSVTEIGVHNRRPPWSVQQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGACCATGAAATCGAGAAAGACGAAGATGACGGACCTCCGCCTGGATGGGAACCTATCACTCCGCCGCTGCCGCCTCCACCACCGCCGCCACTTTCTTCTGATAT
GGCACAAATGGTCTGTGGTTCCTGCCGTCGCCTACTTAAGTATTTAAAAGGAGCCAGATTTGTTCAGTGCTCTTGCTGTTTAACAGTCAACTATGTGTTAGAAGCTCACG
AGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACTAGTGTGACAGAAATTGGGGTGCAT
AATAGACGCCCACCGTGGTCTGTTCAGCAGGGGCAAGCAGCCCCTCCTACTAACGTCCAATAG
mRNA sequenceShow/hide mRNA sequence
GAACAATGGAGAAGTCAGTGCGACAAGAGTTCTCCGTATCAGCGCGGGAGGTTTATAGTCCGCCGTAGAAAACATGGTCGATTCTCTGAGAACGACGAATCGAGAGAATG
GAAGACCATGAAATCGAGAAAGACGAAGATGACGGACCTCCGCCTGGATGGGAACCTATCACTCCGCCGCTGCCGCCTCCACCACCGCCGCCACTTTCTTCTGATATGGC
ACAAATGGTCTGTGGTTCCTGCCGTCGCCTACTTAAGTATTTAAAAGGAGCCAGATTTGTTCAGTGCTCTTGCTGTTTAACAGTCAACTATGTGTTAGAAGCTCACGAGG
TTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACTAGTGTGACAGAAATTGGGGTGCATAAT
AGACGCCCACCGTGGTCTGTTCAGCAGGGGCAAGCAGCCCCTCCTACTAACGTCCAATAGAGTGCCTGCTCATCTATATGAAATACTTGTGCTTAGGAAAAGAACTGGCG
TTTTTCTGAATTCTTCTTTTCCTTTGCAGCCTTAATCAGCAGAGAAGGAAAACAACATTATCATTATTGGCACCTTTTATTTCTCTATTATCTATTGAGTTTATGTAAAG
AAACTGAATGGGCTAACTTCCCAACTTCTAACATGTTTTTATCTCATGTTTGACTTATCTAGGCCTTGTGACTTGACTTCCTACTTATATTCACTTATTAGGTGCTGGCA
ATCTCGGTGTTGTTCATTGTAAATGTGAATGCCACACTCATTCAAAGCAGCACAATGTACTCATTGAAGAGATTGATCAAATAGCTGTCTATGAACTAAATTTGGTCTCA
TTTCTAGCACTTATGGCCTTTTTTAGCCGCAGGATTTGGTGTAATCTGCTTGCTCAAGACTTTTCTTGTGAAGTGCAAATGGCCTTCTGCTATTTGTTTTCATGTACCTT
ATTGAATATTAGTTCTATGGGAATGGCTTTTTTCTTGTTGAAAAATTGGGTTGTGGCAATTTTAAATCATCTTAAATTTAGCGTTGGCGGAAGTTTAATGAGATGAGCGT
ATTACATTTGATCCTTCATATGTTTCCTTAGTTTTCAGATTTTTCGAGATCATGATTTTAAATTCTA
Protein sequenceShow/hide protein sequence
MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVH
NRRPPWSVQQGQAAPPTNVQ