; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0018310 (gene) of Snake gourd v1 genome

Gene IDTan0018310
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG03:21397454..21398809
RNA-Seq ExpressionTan0018310
SyntenyTan0018310
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]5.4e-0667.57Show/hide
Query:  IFMSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        + + + +VLRDN A+VSAGR PLRQR+WECWA PTTS
Subjt:  IFMSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]6.0e-0574.29Show/hide
Query:  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +S+  VL DN AVVSAG+APLRQRRWEC  GPTTS
Subjt:  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
KAA0040296.1 hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]1.3e-0471.43Show/hide
Query:  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +S+  VLR+N A VSAGR PLRQRRWEC  GPTTS
Subjt:  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]6.0e-0574.29Show/hide
Query:  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +S+  VL DN AVVSAG+APLRQRRWEC  GPTTS
Subjt:  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
TYK27262.1 hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa]1.7e-0471.43Show/hide
Query:  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +S+  VLR+N A VSAGR PLRQRRWEC  GPTTS
Subjt:  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein2.6e-0667.57Show/hide
Query:  IFMSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        + + + +VLRDN A+VSAGR PLRQR+WECWA PTTS
Subjt:  IFMSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
A0A5A7T7M6 Reverse transcriptase2.9e-0574.29Show/hide
Query:  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +S+  VL DN AVVSAG+APLRQRRWEC  GPTTS
Subjt:  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
A0A5A7TDY3 Uncharacterized protein6.4e-0571.43Show/hide
Query:  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +S+  VLR+N A VSAGR PLRQRRWEC  GPTTS
Subjt:  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
A0A5D3BTP3 Reverse transcriptase2.9e-0574.29Show/hide
Query:  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +S+  VL DN AVVSAG+APLRQRRWEC  GPTTS
Subjt:  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
A0A5D3DUS7 Uncharacterized protein8.4e-0571.43Show/hide
Query:  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
        +S+  VLR+N A VSAGR PLRQRRWEC  GPTTS
Subjt:  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGTAAGGGTTTCGTGGGAGAAGCTTTAAGGAAGAGGAAGAAGTTGGTTCCTGGGAAAGAAGACTTCGAGGTATTTCTGAACCAATCTATTGGGAATCTCATTTT
CATGTCTTCATACGATGTACTCCGTGACAACAGCGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGGTAAGGGTTTCGTGGGAGAAGCTTTAAGGAAGAGGAAGAAGTTGGTTCCTGGGAAAGAAGACTTCGAGGTATTTCTGAACCAATCTATTGGGAATCTCATTTT
CATGTCTTCATACGATGTACTCCGTGACAACAGCGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG
Protein sequenceShow/hide protein sequence
MKGKGFVGEALRKRKKLVPGKEDFEVFLNQSIGNLIFMSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS