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Tan0018330 (gene) of Snake gourd v1 genome

Gene IDTan0018330
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG09:41435251..41435526
RNA-Seq ExpressionTan0018330
SyntenyTan0018330
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.9e-1253.85Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQANPEKKYGIERLKALGATTFEGTTDPAEAE
        M RG  R     +T         G   S+ ESS P  E NMEEQ+  R+ QRL   + SAQ++PEKKYGIERLKALGATTF GTT+PA+AE
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQANPEKKYGIERLKALGATTFEGTTDPAEAE

WP_217833179.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]3.2e-1978.46Show/hide
Query:  VSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQANPEKKYGIERLKALGATTFEGTTDPAEAE
        +SEGESSHPQ EVN+EEQ+FTRI QRLA S+GS +++PEKKY IERLKALGATTFEGT DP EAE
Subjt:  VSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQANPEKKYGIERLKALGATTFEGTTDPAEAE

XP_038882393.1 uncharacterized protein LOC120073661 [Benincasa hispida]8.3e-1261.76Show/hide
Query:  VSEGESSHPQ--QEVNMEEQIFTRITQRLAESVGSAQANPEKKYGIERLKALGATTFEGTTDPAEAEV
        +SEGES  PQ   +  +E+ +F +I QRL  S+GSA+A+ EKKYGIER KALGA TFEGTTDPAE E+
Subjt:  VSEGESSHPQ--QEVNMEEQIFTRITQRLAESVGSAQANPEKKYGIERLKALGATTFEGTTDPAEAEV

XP_038890030.1 uncharacterized protein LOC120079741 [Benincasa hispida]1.1e-1164.71Show/hide
Query:  VSEGESSHPQQEV--NMEEQIFTRITQRLAESVGSAQANPEKKYGIERLKALGATTFEGTTDPAEAEV
        +SEGESS PQ      +E+ +F RI QRLA SVG  +AN EKKY IER KALGA TFEGTTDP EAE+
Subjt:  VSEGESSHPQQEV--NMEEQIFTRITQRLAESVGSAQANPEKKYGIERLKALGATTFEGTTDPAEAEV

XP_038896416.1 uncharacterized protein LOC120084680 [Benincasa hispida]1.7e-1275Show/hide
Query:  MEEQIFTRITQRLAESVGSAQANPEKKYGIERLKALGATTFEGTTDPAEAEV
        ME+++F RITQRLA SVGS Q +PEKK+GIERLKALGATTF+GTTDP +AE+
Subjt:  MEEQIFTRITQRLAESVGSAQANPEKKYGIERLKALGATTFEGTTDPAEAEV

TrEMBL top hitse value%identityAlignment
A0A5A7SJ99 DNA/RNA polymerases superfamily protein1.3e-1058.82Show/hide
Query:  GREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQANPEKKYGIERLKALGATTFEGTTDPAEAE
        G   S+ ESS P  E N+EEQ+  R+ QRL   +  AQ++ EKKYGIERLKALGATTF GTT+P +AE
Subjt:  GREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQANPEKKYGIERLKALGATTFEGTTDPAEAE

A0A5A7SKG0 Uncharacterized protein3.4e-1156.96Show/hide
Query:  ETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQANPEKKYGIERLKALGATTFEGTTDPAEAE
        E GT +AT    RE + G+S+H   + NMEE+IF +I QRLA+ V  AQA+ EKKYGIER+KALGAT F+GT D  E E
Subjt:  ETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQANPEKKYGIERLKALGATTFEGTTDPAEAE

A0A5A7T1M0 Reverse transcriptase4.5e-1149.45Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQANPEKKYGIERLKALGATTFEGTTDPAEAE
        M RG  R     E          G   S+ ESS P+ E N+EEQ+  R+ QRL   + SAQ++PEKKYG ERLKALGATTF GTT+P + E
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQANPEKKYGIERLKALGATTFEGTTDPAEAE

A0A5D3BB91 Reverse transcriptase4.5e-1149.45Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQANPEKKYGIERLKALGATTFEGTTDPAEAE
        M RG  R     E          G   S+ ESS P+ E N+EEQ+  R+ QRL   + SAQ++PEKKYG ERLKALGATTF GTT+P + E
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQANPEKKYGIERLKALGATTFEGTTDPAEAE

A0A5D3DES5 DNA/RNA polymerases superfamily protein1.4e-1253.85Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQANPEKKYGIERLKALGATTFEGTTDPAEAE
        M RG  R     +T         G   S+ ESS P  E NMEEQ+  R+ QRL   + SAQ++PEKKYGIERLKALGATTF GTT+PA+AE
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQANPEKKYGIERLKALGATTFEGTTDPAEAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTTGAGACTGGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGA
GGTGAACATGGAGGAACAGATCTTTACGAGGATAACTCAAAGATTAGCTGAAAGTGTTGGATCAGCACAAGCAAATCCAGAAAAGAAGTATGGCATTGAAAGACTGAAAG
CCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCGCTGAGGCTGAGGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTTGAGACTGGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGA
GGTGAACATGGAGGAACAGATCTTTACGAGGATAACTCAAAGATTAGCTGAAAGTGTTGGATCAGCACAAGCAAATCCAGAAAAGAAGTATGGCATTGAAAGACTGAAAG
CCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCGCTGAGGCTGAGGTTTAG
Protein sequenceShow/hide protein sequence
MARGGKRGRQVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQANPEKKYGIERLKALGATTFEGTTDPAEAEV