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Tan0018354 (gene) of Snake gourd v1 genome

Gene IDTan0018354
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG09:19591791..19592108
RNA-Seq ExpressionTan0018354
SyntenyTan0018354
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]4.3e-3677.14Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNIMVHFNVAEVNGVVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVLN+MVHFNVAE+NG VIDE SQVSFI+ESLP+SFLQFR+N+VMNKI Y LTTLLN
Subjt:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNIMVHFNVAEVNGVVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN

Query:  ELQTF
        ELQTF
Subjt:  ELQTF
KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]4.3e-3677.14Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNIMVHFNVAEVNGVVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVLN+MVHFNVAE+NG VIDE SQVSFI+ESLP+SFLQFR+N+VMNKI Y LTTLLN
Subjt:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNIMVHFNVAEVNGVVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN

Query:  ELQTF
        ELQTF
Subjt:  ELQTF
KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]4.3e-3677.14Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNIMVHFNVAEVNGVVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVLN+MVHFNVAE+NG VIDE SQVSFI+ESLP+SFLQFR+N+VMNKI Y LTTLLN
Subjt:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNIMVHFNVAEVNGVVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN

Query:  ELQTF
        ELQTF
Subjt:  ELQTF
KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]1.9e-3678.1Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNIMVHFNVAEVNGVVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVLNIMVHFNVAE+NG VIDE SQVSFI+ESLP+SFLQFR+N+VMNKI Y LTTLLN
Subjt:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNIMVHFNVAEVNGVVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN

Query:  ELQTF
        ELQTF
Subjt:  ELQTF
TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]4.3e-3677.14Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNIMVHFNVAEVNGVVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVLN+MVHFNVAE+NG VIDE SQVSFI+ESLP+SFLQFR+N+VMNKI Y LTTLLN
Subjt:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNIMVHFNVAEVNGVVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN

Query:  ELQTF
        ELQTF
Subjt:  ELQTF
TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein2.1e-3677.14Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNIMVHFNVAEVNGVVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVLN+MVHFNVAE+NG VIDE SQVSFI+ESLP+SFLQFR+N+VMNKI Y LTTLLN
Subjt:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNIMVHFNVAEVNGVVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN

Query:  ELQTF
        ELQTF
Subjt:  ELQTF
A0A5A7TU93 Gag/pol protein2.1e-3677.14Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNIMVHFNVAEVNGVVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVLN+MVHFNVAE+NG VIDE SQVSFI+ESLP+SFLQFR+N+VMNKI Y LTTLLN
Subjt:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNIMVHFNVAEVNGVVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN

Query:  ELQTF
        ELQTF
Subjt:  ELQTF
A0A5A7V4M1 Gag/pol protein2.1e-3677.14Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNIMVHFNVAEVNGVVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVLN+MVHFNVAE+NG VIDE SQVSFI+ESLP+SFLQFR+N+VMNKI Y LTTLLN
Subjt:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNIMVHFNVAEVNGVVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN

Query:  ELQTF
        ELQTF
Subjt:  ELQTF
A0A5A7V6N0 Gag/pol protein9.3e-3778.1Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNIMVHFNVAEVNGVVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVLNIMVHFNVAE+NG VIDE SQVSFI+ESLP+SFLQFR+N+VMNKI Y LTTLLN
Subjt:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNIMVHFNVAEVNGVVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN

Query:  ELQTF
        ELQTF
Subjt:  ELQTF
A0A5D3CPJ6 Gag/pol protein2.1e-3677.14Show/hide
Query:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNIMVHFNVAEVNGVVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN
        M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVLN+MVHFNVAE+NG VIDE SQVSFI+ESLP+SFLQFR+N+VMNKI Y LTTLLN
Subjt:  MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNIMVHFNVAEVNGVVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLN

Query:  ELQTF
        ELQTF
Subjt:  ELQTF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCACCGCAAAGGAGATCATGGGATCATTACAGGCCATGTTTGGACAACCGTCCTCATCGGTCTGTTATGATGCTCTCAAGTACGTTTACAACTCCCGAATGAAGGA
GGGAACATCTGTTAGGGAGCATGTCCTTAATATCATGGTCCACTTTAACGTAGCAGAGGTAAACGGGGTTGTCATTGATGAGAACAGTCAGGTTAGCTTTATAATGGAAT
CTCTTCCGAAGAGTTTCCTGCAGTTCCGCACCAACTCGGTGATGAACAAGATAGAGTATAACCTGACTACTCTACTTAACGAGCTCCAGACATTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCACCGCAAAGGAGATCATGGGATCATTACAGGCCATGTTTGGACAACCGTCCTCATCGGTCTGTTATGATGCTCTCAAGTACGTTTACAACTCCCGAATGAAGGA
GGGAACATCTGTTAGGGAGCATGTCCTTAATATCATGGTCCACTTTAACGTAGCAGAGGTAAACGGGGTTGTCATTGATGAGAACAGTCAGGTTAGCTTTATAATGGAAT
CTCTTCCGAAGAGTTTCCTGCAGTTCCGCACCAACTCGGTGATGAACAAGATAGAGTATAACCTGACTACTCTACTTAACGAGCTCCAGACATTCTAG
Protein sequenceShow/hide protein sequence
MITAKEIMGSLQAMFGQPSSSVCYDALKYVYNSRMKEGTSVREHVLNIMVHFNVAEVNGVVIDENSQVSFIMESLPKSFLQFRTNSVMNKIEYNLTTLLNELQTF