; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0018395 (gene) of Snake gourd v1 genome

Gene IDTan0018395
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG02:93043158..93043924
RNA-Seq ExpressionTan0018395
SyntenyTan0018395
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_040987787.1 uncharacterized protein LOC121235506 [Juglans microcarpa x Juglans regia]5.0e-0632.74Show/hide
Query:  SREIQWNGG----QQQKVSEVPRGCVKVFVDAACDDVNNRIGTGVAIVKPDGTLIATMENCWYNYLTPLVAEAFAARDGVRLASQMGFKHCLFFSDSSVV
        S+ ++  GG    +QQ+  +   G +K   +AA D+ N R+G GV I   +G L+A+  +        +VAE+   R   +L S++GF   LF  D+ VV
Subjt:  SREIQWNGG----QQQKVSEVPRGCVKVFVDAACDDVNNRIGTGVAIVKPDGTLIATMENCWYNYLTPLVAEAFAARDGVRLASQMGFKHCLFFSDSSVV

Query:  VSMVNDRSDVQNW
        V+ +  R+ V+NW
Subjt:  VSMVNDRSDVQNW

XP_041003981.1 uncharacterized protein LOC121249338 [Juglans microcarpa x Juglans regia]8.5e-0631.53Show/hide
Query:  LHSREIQWNGGQQQKVSEV---------PRGCVKVFVDAACDDVNNRIGTGVAIVKPDGTLIATMENCWYNYLTPLVAEAFAARDGVRLASQMGFKHCLF
        L S ++    G QQKV++          P    K   DAA D +N+R+G GV +   +G ++A++ +    +L PL+ EA AAR      + +GF+H + 
Subjt:  LHSREIQWNGGQQQKVSEV---------PRGCVKVFVDAACDDVNNRIGTGVAIVKPDGTLIATMENCWYNYLTPLVAEAFAARDGVRLASQMGFKHCLF

Query:  FSDSSVVVSMV
          DS +VV  +
Subjt:  FSDSSVVVSMV

XP_042941317.1 uncharacterized protein LOC122275981 [Carya illinoinensis]2.2e-0633.6Show/hide
Query:  CGWLVDYLNRYQHLHSREIQWNGGQQQKVSEVPRG-CVKVFVDAACDDVNNRIGTGVAIVKPDGTLIATMENCWYNYLTPLVAEAFAARDGVRLASQMGF
        CG L ++++  +      ++ +  +++   E P G  VKV  DAA D  N R+G GV I   +G L+A + +   +   PLVAEA A R    L+ ++GF
Subjt:  CGWLVDYLNRYQHLHSREIQWNGGQQQKVSEVPRG-CVKVFVDAACDDVNNRIGTGVAIVKPDGTLIATMENCWYNYLTPLVAEAFAARDGVRLASQMGF

Query:  KHCLFFSDSSVVVSMVNDRSDVQNW
           +   DS V+V+ VN  SD + W
Subjt:  KHCLFFSDSSVVVSMVNDRSDVQNW

XP_042958055.1 uncharacterized protein LOC122293570 [Carya illinoinensis]5.0e-0641.05Show/hide
Query:  EVPRG-CVKVFVDAACDDVNNRIGTGVAIVKPDGTLIATMENCWYNYLTPLVAEAFAARDGVRLASQMGFKHCLFFSDSSVVVSMVNDRSDVQNW
        E P G  VKV  DAA D  N R+G GV I   +G L+A + +   +   PLVAEA A R    L+ +MGF   +   DS ++V+ VN  SD + W
Subjt:  EVPRG-CVKVFVDAACDDVNNRIGTGVAIVKPDGTLIATMENCWYNYLTPLVAEAFAARDGVRLASQMGFKHCLFFSDSSVVVSMVNDRSDVQNW

XP_042958157.1 uncharacterized protein LOC122293732 [Carya illinoinensis]6.5e-0636.96Show/hide
Query:  PRGCVKVFVDAACDDVNNRIGTGVAIVKPDGTLIATMENCWYNYLTPLVAEAFAARDGVRLASQMGFKHCLFFSDSSVVVSMVNDRSDVQNW
        P    K+  DAA D VN  +G GVA+   DG +  T+ +   ++L PL+ EA AA   V+L  ++G  + +F  DS +VVS +N  S  ++W
Subjt:  PRGCVKVFVDAACDDVNNRIGTGVAIVKPDGTLIATMENCWYNYLTPLVAEAFAARDGVRLASQMGFKHCLFFSDSSVVVSMVNDRSDVQNW

TrEMBL top hitse value%identityAlignment
A0A2I4DWF6 uncharacterized protein LOC1089841073.5e-0535.44Show/hide
Query:  DAACDDVNNRIGTGVAIVKPDGTLIATMENCWYNYLTPLVAEAFAARDGVRLASQMGFKHCLFFSDSSVVVSMVNDRSD
        DAA D VN+R+G GV +   +G ++A++ +     L PL+ EA AAR      + MG +H +   DS +VV  + ++ D
Subjt:  DAACDDVNNRIGTGVAIVKPDGTLIATMENCWYNYLTPLVAEAFAARDGVRLASQMGFKHCLFFSDSSVVVSMVNDRSD

A0A2I4GIZ4 uncharacterized protein LOC1090082891.2e-0531.9Show/hide
Query:  VDYLNRYQHLHSREIQWNGGQQQKVSEVPRGCVKVFVDAACDDVNNRIGTGVAIVKPDGTLIATMENCWYNYLTPLVAEAFAARDGVRLASQMGFKHCLF
        ++ L R Q  HS + Q       K  + P    K+  DAA D VN R+G GV+I    G   AT+ +   ++  P + EA AA   V+  ++MG ++ +F
Subjt:  VDYLNRYQHLHSREIQWNGGQQQKVSEVPRGCVKVFVDAACDDVNNRIGTGVAIVKPDGTLIATMENCWYNYLTPLVAEAFAARDGVRLASQMGFKHCLF

Query:  FSDSSVVVSMVNDRSD
          DS +VV+ +N  ++
Subjt:  FSDSSVVVSMVNDRSD

A0A2I4H2K4 uncharacterized protein LOC1090129302.7e-0532.98Show/hide
Query:  QKVSEVPRGCVKVFVDAACDDVNNRIGTGVAIVKPDGTLIATMENCWYNYLTPLVAEAFAARDGVRLASQMGFKHCLFFSDSSVVVSMVNDRSD
        QKVS      +K   DAA D  N+R+G GV +   +G ++A++ +    +  PL+ EA AAR      + +GF+H +   DS +VV  + ++ D
Subjt:  QKVSEVPRGCVKVFVDAACDDVNNRIGTGVAIVKPDGTLIATMENCWYNYLTPLVAEAFAARDGVRLASQMGFKHCLFFSDSSVVVSMVNDRSD

A0A5N5GXC2 Ribonuclease H protein7.0e-0637.35Show/hide
Query:  VKVFVDAACDDVNNRIGTGVAIVKPDGTLIATMENCWYNYLTPLVAEAFAARDGVRLASQMGFKHCLFFSDSSVVVSMVNDRS
        +K+ +D A ++ + R G GV I    G  +A +   + +  +PLV+EA AAR+G  LA+Q GF++ +  SDS  +V+ +ND S
Subjt:  VKVFVDAACDDVNNRIGTGVAIVKPDGTLIATMENCWYNYLTPLVAEAFAARDGVRLASQMGFKHCLFFSDSSVVVSMVNDRS

A0A6P9EGR3 uncharacterized protein LOC1183486033.5e-0530.58Show/hide
Query:  VDYLNRYQHLHSREIQWNGGQQQKVSEVPRGCVKVFVDAACDDVNNRIGTGVAIVKPDGTLIATMENCWYNYLTPLVAEAFAARDGVRLASQMGFKHCLF
        ++ L R Q  HS + Q       K  + P    K+  D A D VN R+G GV+I    G   AT+ +    +  P + EA AA   V+  ++MG ++ +F
Subjt:  VDYLNRYQHLHSREIQWNGGQQQKVSEVPRGCVKVFVDAACDDVNNRIGTGVAIVKPDGTLIATMENCWYNYLTPLVAEAFAARDGVRLASQMGFKHCLF

Query:  FSDSSVVVSMVNDRSDVQNWK
          DS +VV+ +N+ +  ++W+
Subjt:  FSDSSVVVSMVNDRSDVQNWK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGTGGAGGTCCGGTGTGGATGGTTGGTTGACTATTTAAACAGATATCAACACCTTCATAGTCGAGAGATACAATGGAATGGGGGGCAACAACAGAAAGTAAGTGA
GGTACCAAGGGGTTGTGTTAAGGTGTTTGTGGATGCGGCGTGTGATGATGTGAATAATCGAATAGGGACTGGAGTTGCTATTGTTAAGCCAGATGGTACGTTGATTGCGA
CAATGGAGAATTGTTGGTATAATTACCTTACGCCACTTGTTGCGGAGGCGTTTGCTGCTCGTGATGGAGTCCGTTTGGCTTCCCAAATGGGGTTCAAACATTGTCTTTTC
TTCTCTGATTCATCGGTTGTGGTTTCTATGGTAAATGATCGTAGTGACGTTCAGAATTGGAAATTGGGCCCATCGGGAAGCCCAATGACCCAACCGCATGGTAGCCCAAT
TGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGTGGAGGTCCGGTGTGGATGGTTGGTTGACTATTTAAACAGATATCAACACCTTCATAGTCGAGAGATACAATGGAATGGGGGGCAACAACAGAAAGTAAGTGA
GGTACCAAGGGGTTGTGTTAAGGTGTTTGTGGATGCGGCGTGTGATGATGTGAATAATCGAATAGGGACTGGAGTTGCTATTGTTAAGCCAGATGGTACGTTGATTGCGA
CAATGGAGAATTGTTGGTATAATTACCTTACGCCACTTGTTGCGGAGGCGTTTGCTGCTCGTGATGGAGTCCGTTTGGCTTCCCAAATGGGGTTCAAACATTGTCTTTTC
TTCTCTGATTCATCGGTTGTGGTTTCTATGGTAAATGATCGTAGTGACGTTCAGAATTGGAAATTGGGCCCATCGGGAAGCCCAATGACCCAACCGCATGGTAGCCCAAT
TGTATAA
Protein sequenceShow/hide protein sequence
MSVEVRCGWLVDYLNRYQHLHSREIQWNGGQQQKVSEVPRGCVKVFVDAACDDVNNRIGTGVAIVKPDGTLIATMENCWYNYLTPLVAEAFAARDGVRLASQMGFKHCLF
FSDSSVVVSMVNDRSDVQNWKLGPSGSPMTQPHGSPIV